View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4375-Insertion-4 (Length: 1097)

Name: NF4375-Insertion-4
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4375-Insertion-4
NF4375-Insertion-4
[»] chr1 (12 HSPs)
chr1 (393-1044)||(14665378-14666039)
chr1 (24-312)||(14665089-14665378)
chr1 (679-828)||(14687785-14687941)
chr1 (881-990)||(14673009-14673121)
chr1 (881-990)||(14678387-14678499)
chr1 (173-277)||(14668331-14668435)
chr1 (302-381)||(14653014-14653093)
chr1 (302-381)||(14662805-14662884)
chr1 (900-964)||(14687716-14687781)
chr1 (173-277)||(14702763-14702867)
chr1 (110-218)||(14707436-14707548)
chr1 (318-366)||(14687940-14687988)
[»] chr2 (2 HSPs)
chr2 (753-1044)||(30735121-30735422)
chr2 (110-277)||(30732764-30732935)


Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 393 - 1044
Target Start/End: Original strand, 14665378 - 14666039
Alignment:
Q  393 aattggggttaacttgctgctgcaaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc 492  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14665378 aattggggttaacttgctgctgcgaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc 14665477  T
Q  493 tctacattataccaaatcttgttgttcctttgtttccaaatgctcgatataaaaactgcaaaattggcaatttgttctcgattaaaattctgcaacatgc 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14665478 tctacattataccaaatcttgttgttcctttgtttccaaatgctcgatataaaaactgcaaaattggcaatttgttctcgattaaaattctgcaacatgc 14665577  T
Q  593 agagttttgttttgtttcggattagatttgaaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttgacagttattaagttaca 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14665578 agagttttgttttgtttcggattagatttgaaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttgacagttattaagttaca 14665677  T
Q  693 tagtaagaaattccttgcacaagaaattattgtaactagtttcaaatttaatacttcctagctgataactcacttatacttcaacaatattagttcaaac 792  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14665678 tagtaagaaattccttgcacaaaaagttattgtaactagtttcaaatttaatactttctagctgataactcacttatacttcaacaatattagttcaaac 14665777  T
Q  793 aaaatctttatagcaagagcttcagtagctaataaaatgggggttaggtttcaactttcaaccaatgttattgtagtgatttactacaatcaatatattc 892  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14665778 aaaatctttatagcaagagcttcagtagctaataaactgggggttaggtttcaactttcaatcaatgttattgtagtgatttactacaatcaatatattc 14665877  T
Q  893 tataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaa--ttttttactatacactatatgtcag--atcacttgcctc 988  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||    
T  14665878 tataaaaggaacaaatatagcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacactatatgtcaggaatcacttgcctc 14665977  T
Q  989 gt--catcccatcgattattattt-gtcgc-tgtg--tcatctcataacataaaatttgagg 1044  Q
    ||   ||||||||||| ||||||| ||||| ||||  |||||||||||||||||||||||||    
T  14665978 gttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttgagg 14666039  T

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Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 14665089 - 14665378
Alignment:
Q  24 atgataaatagcatatagcatttgattatagaatctcgcgaatacacgtaagaatatcattgaaaatgaagaractatctaaaaataaggccgcccttgc 123  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||  ||| ||||||||||||||||||||||    
T  14665089 atgataaatagcatatagcatttgattatagaatatcgtgaatacacataagaatatcattgaaaatgcagaagctagctaaaaataaggccgcccttgc 14665188  T
Q  124 taacac--gagcaacgtcrttgacttttctccttataagctcaatcttagattttataacggacaagattatatcttcgggctcggataacatcactaag 221  Q
    ||||||  |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  14665189 taacacatgagcaacgtcattgacttttctccttataagctcaatcatagattttacaacggacaagattatatcttcgggctcgg-taacatcactaag 14665287  T
Q  222 atccaacacctctagactcttgctgtggaattgatcaaccacgcactttgaatccacattctcaagctgcaaaatcttttatatgtcaata 312  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14665288 atccgacacctctagactcttactgtggaattgatcaaccacgcactttgaatccacattctcaagctgcaaaatcttttatatgtcaata 14665378  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 679 - 828
Target Start/End: Complemental strand, 14687941 - 14687785
Alignment:
Q  679 gttattaagttacatagtaagaaattccttgcacaagaaattattgtaactagtttcaaatttaatacttcctagctgataactcacttatacttcaaca 778  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  14687941 gttattaagttacatagtaagaaattacttgcacaagaagttattgtaactagtttcaaatttaatacattctagctgataacgcacttatacttcaaca 14687842  T
Q  779 atatt-------agttcaaacaaaatctttatagcaagagcttcagtagctaataaa 828  Q
    ||| |       | |||||||||||||| ||||| ||||||||| ||||||||||||    
T  14687841 atactaattcaaacttcaaacaaaatctatatagaaagagcttcggtagctaataaa 14687785  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 881 - 990
Target Start/End: Complemental strand, 14673121 - 14673009
Alignment:
Q  881 atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaatt-ttttactatacactatatgtcag--a 977  Q
    ||||| ||||||||||||||||||||||||||||||||  |||| |||||| ||||||| ||||||||||||| |||||||||||||||||||||||  |    
T  14673121 atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa 14673022  T
Q  978 tcacttgcctcgt 990  Q
    |||||||||||||    
T  14673021 tcacttgcctcgt 14673009  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 881 - 990
Target Start/End: Complemental strand, 14678499 - 14678387
Alignment:
Q  881 atcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaatt-ttttactatacactatatgtcag--a 977  Q
    ||||| ||||||||||||||||||||||||||||||||  |||| |||||| ||||||| ||||||||||||| |||||||||||||||||||||||  |    
T  14678499 atcaaaatattctataaaaggaacaaatatggcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaa 14678400  T
Q  978 tcacttgcctcgt 990  Q
    |||||||||||||    
T  14678399 tcacttgcctcgt 14678387  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 14668331 - 14668435
Alignment:
Q  173 ttttataacggacaagattatatcttcgggctcggataacatcactaagatccaacacctctagactcttgctgtggaattgatcaaccacgcactttga 272  Q
    ||||| ||||||||||| ||| ||| ||| ||||||||| |||||| |||||| ||||| ||||||| || |||||||||| ||||||||||||||||||    
T  14668331 ttttacaacggacaagaatatctctacggtctcggataatatcacttagatccgacacccctagacttttactgtggaatttatcaaccacgcactttga 14668430  T
Q  273 atcca 277  Q
    |||||    
T  14668431 atcca 14668435  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 302 - 381
Target Start/End: Original strand, 14653014 - 14653093
Alignment:
Q  302 atatgtcaataccaaccttgttgtgaagcttcgaagaggctgcatccacattgcatttgtagcgtcctagatgaggtttt 381  Q
    |||||||| ||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||||||||||||||||||    
T  14653014 atatgtcagtaccaaccttgttgtgaagctccaataaggctgcatacacattgcatttgtagcgtcctagatgaggtttt 14653093  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 302 - 381
Target Start/End: Original strand, 14662805 - 14662884
Alignment:
Q  302 atatgtcaataccaaccttgttgtgaagcttcgaagaggctgcatccacattgcatttgtagcgtcctagatgaggtttt 381  Q
    |||||||| ||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||||||||||||||||||    
T  14662805 atatgtcagtaccaaccttgttgtgaagctccaataaggctgcatacacattgcatttgtagcgtcctagatgaggtttt 14662884  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 900 - 964
Target Start/End: Complemental strand, 14687781 - 14687716
Alignment:
Q  900 ggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaatt-ttttactatac 964  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||    
T  14687781 ggaacaaatatggcaatgcatcaagttcctaagtatacaccttttgttctaattcttttactatac 14687716  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 14702867 - 14702763
Alignment:
Q  173 ttttataacggacaagattatatcttcgggctcggataacatcactaagatccaacacctctagactcttgctgtggaattgatcaaccacgcactttga 272  Q
    ||||| ||||||| |||||||||| || | || |||||| ||||||| ||||| ||||| |||||||||| ||||||| || ||||||| | ||||||||    
T  14702867 ttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagactcttactgtggagtttatcaaccgcacactttga 14702768  T
Q  273 atcca 277  Q
    |||||    
T  14702767 atcca 14702763  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 14707548 - 14707436
Alignment:
Q  110 aaggccgcccttgctaacac----gagcaacgtcrttgacttttctccttataagctcaatcttagattttataacggacaagattatatcttcgggctc 205  Q
    ||||||||||||||||||||    |||||||    ||||||| |||||| |||| ||||||||||  ||||| ||||||||||||||| ||| ||| |||    
T  14707548 aaggccgcccttgctaacacttatgagcaacccttttgacttgtctcctaataaactcaatcttaatttttacaacggacaagattatctctacggtctc 14707449  T
Q  206 ggataacatcact 218  Q
    |||||| ||||||    
T  14707448 ggataatatcact 14707436  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 14687988 - 14687940
Alignment:
Q  318 cttgttgtgaagcttcgaagaggctgcatccacattgcatttgtagcgt 366  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  14687988 cttgttgtgaagctccgaaaaggctgcattcacattgcatttgtagcgt 14687940  T

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Target: chr2 (Bit Score: 210; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 753 - 1044
Target Start/End: Complemental strand, 30735422 - 30735121
Alignment:
Q  753 gctgataactcacttatacttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataaaatgggggttaggtttcaactttca 852  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  30735422 gctgataactcacttatacttcaacaatattagttcaaacaaaatctttatagcaagagcttcagtagctaataatctggtggttaggtttcaactttca 30735323  T
Q  853 accaatgttattgtagtgatttactacaatcaatatattctataaaaggaacaaatatggcaatgcatgaagctcctaaatatacaccttttgttctaat 952  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  30735322 atcaatgttattgtagtgatttactacaatcaatatattctataaaaggaacaaatattgcaatgcatgaagctcctaagtatacaccttttgttctaat 30735223  T
Q  953 t--ttttactatacactatatgtcag--atcacttgcctcgt--catcccatcgattattattt-gtcgc-tgtg--tcatctcataacataaaatttga 1042  Q
    |  |||||||||||||||||||||||  ||||||||||||||   ||||||||||| ||||||| ||||| ||||  |||||||||||||||||||||||    
T  30735222 tttttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatctcataacataaaatttga 30735123  T
Q  1043 gg 1044  Q
    ||    
T  30735122 gg 30735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 110 - 277
Target Start/End: Complemental strand, 30732935 - 30732764
Alignment:
Q  110 aaggccgcccttgctaacac----gagcaacgtcrttgacttttctccttataagctcaatcttagattttataacggacaagattatatcttcgggctc 205  Q
    ||||||||||||||||||||    |||||||    ||||||| |||||| |||| ||||   |||  ||||| |||||| |||||||| ||| ||| |||    
T  30732935 aaggccgcccttgctaacacttatgagcaacccttttgacttgtctcctaataaactcatctttaatttttacaacggataagattatctctacggtctc 30732836  T
Q  206 ggataacatcactaagatccaacacctctagactcttgctgtggaattgatcaaccacgcactttgaatcca 277  Q
    |||||| | |||| |||||| ||||| ||||||| || |||||||||| |||||||||||||||||||||||    
T  30732835 ggataataccacttagatccgacacccctagacttttactgtggaatttatcaaccacgcactttgaatcca 30732764  T

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