View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4375-Insertion-7 (Length: 814)
Name: NF4375-Insertion-7
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 279 - 564
Target Start/End: Complemental strand, 14837728 - 14837429
Alignment:
| Q |
279 |
cttcatttttactttacctccagaatttgtgtttaattatgtgatttgtcct---ctttgtatagtcagcgtcatttagtaattgatggcatatgggaag |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
14837728 |
cttcatttttactttacctccagaatttgtgtttaagtatgtgatttgtccttttctttgtatagaccgcgtcatttagtaattgatggcatatgggaag |
14837629 |
T |
|
| Q |
376 |
tattctttacaatggttgttttgcttcactctttagttcttgaaattgaatcctgcaa-----------tgaatttcataatctattccacacaaagatt |
464 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14837628 |
tattctttacaatggccgttttgcttcactctgtagttcttgcaattgaatcctgcaagagtaagtaattgaatttcataatctattccacacaaagatt |
14837529 |
T |
|
| Q |
465 |
gaaagaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgtttataaagagagaaaaattaaggaaagcatctcaac |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
14837528 |
gaaagaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgttgataaagagaaaaaaattaagaaaagcatctcaac |
14837429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 283 - 565
Target Start/End: Original strand, 22784014 - 22784311
Alignment:
| Q |
283 |
atttttactttacctccagaatttgtgtttaattatgtgatttgtcctctt---tgtatagtcagcgtcatttagtaattgatggcatatgggaagtatt |
379 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
22784014 |
atttttactttacctccaaaatttgtgtttaagtatgtgatttgtcctcttctttgtatagaccgagtcatttagtaattgatggcatatgggaagtatt |
22784113 |
T |
|
| Q |
380 |
ctttacaatggttgttttgcttcactctttagttcttgaaattgaatcctgcaa-----------tgaatttcataatctattccacacaaagattgaaa |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22784114 |
ctttacaatggttgttttgcttcactctttagttcttgcaattgaatcctgcaagagtaagtaattgaatttcataatctattccacacaaagattgaaa |
22784213 |
T |
|
| Q |
469 |
gaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgtttataaagag-agaaaaattaaggaaagcatctcaaca |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||| |
|
|
| T |
22784214 |
gaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgttgataaagagaaaaaaaattaagaaaagcatctcaaca |
22784311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 14837973 - 14837779
Alignment:
| Q |
8 |
aatgttttagtaattacaaaagttaatgttttgtatcaaattccctcttgctgtcatcaagctcacatagccaattcctatgaaatctatcaaacttatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
14837973 |
aatgttttagtaattacaaaagttaatgttt-gtatcaaattccctcttgctgtcatcaagctcacatagccaattcccatgaaatctatcaaacttaac |
14837875 |
T |
|
| Q |
108 |
ctaaagtcaaattgtgacagaaaaatgcattttcattggtatgtacatgtgcttttagctactttctaattggcacctcagcgagcaatgtcacaa |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14837874 |
ctaaagtcaaattgagacagaaaaatgcattttcattggtatgtacatgtgctcttagctactttctaactggcacctcagcgagcaatgtcacaa |
14837779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 22783765 - 22783959
Alignment:
| Q |
8 |
aatgttttagtaattacaaaagttaatgttttgtatcaaattccctcttgctgtcatcaagctcacatagccaattcctatgaaatctatcaaacttatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22783765 |
aatgttttagtaattacaaaagttaatgttt-gtatgaaattccctctggctgtcatcaagctcacatagccaattcccatgaaatctatcaaacttatc |
22783863 |
T |
|
| Q |
108 |
ctaaagtcaaattgtgacagaaaaatgcattttcattggtatgtacatgtgcttttagctactttctaattggcacctcagcgagcaatgtcacaa |
203 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22783864 |
ctaaagtcaaattgagacagataaatgcattttcattggtatgtacatgtgctcttagctactttctaactggcacctcagcgagcaatgccacaa |
22783959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 279 - 564
Target Start/End: Original strand, 27963961 - 27964260
Alignment:
| Q |
279 |
cttcatttttactttacctccagaatttgtgtttaattatgtgatttgtcct---ctttgtatagtcagcgtcatttagtaattgatggcatatgggaag |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
27963961 |
cttcatttttactttacctccagaatttgtgtttaagtatgtgatttgtccttttctttgtatagaccgcgtcatttagtaattgatggcatatgggaag |
27964060 |
T |
|
| Q |
376 |
tattctttacaatggttgttttgcttcactctttagttcttgaaattgaatcctgcaa-----------tgaatttcataatctattccacacaaagatt |
464 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27964061 |
tattctttacaatggccgttctgcttcactctgtagttcttgcaattgaatcctgcaagagtaagtaattgaatttcataatctattccacacaaagatt |
27964160 |
T |
|
| Q |
465 |
gaaagaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgtttataaagagagaaaaattaaggaaagcatctcaac |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
27964161 |
gaaagaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgttgataaagagaaaaaaattaagaaaagcatctcaac |
27964260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 27963717 - 27963911
Alignment:
| Q |
8 |
aatgttttagtaattacaaaagttaatgttttgtatcaaattccctcttgctgtcatcaagctcacatagccaattcctatgaaatctatcaaacttatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
27963717 |
aatgttttagtaattacaaaagttaatgttt-gtatcaaattccctcttgctgtcatcaagctcacatagccaattcccatgaaatctatcaaacttaac |
27963815 |
T |
|
| Q |
108 |
ctaaagtcaaattgtgacagaaaaatgcattttcattggtatgtacatgtgcttttagctactttctaattggcacctcagcgagcaatgtcacaa |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27963816 |
ctaaagtcaaattgagacagaaaaatgcattttcattggtatgtacatgtgctcttagctactttctaactggcacctcagcgagcaatgtcacaa |
27963911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 39274589 - 39274751
Alignment:
| Q |
8 |
aatgttttagtaattacaaaagttaatgttttgtatcaaattccctcttgctgtcatcaagctcacatagccaattcctatgaaatctatcaaacttatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
39274589 |
aatgttttagtaattacaaaagttaatgttt-gtatcaaattccctcttgctgctatcaagctgacatagccaattcccatgaaagctatcaaacttatc |
39274687 |
T |
|
| Q |
108 |
ctaaagtcaaattgtgacagaaaaatgcattttcattggtatgtacatgtgcttttagctactt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39274688 |
ctaaagtcaaattgtgacagaaaaatgcattttcattggtatgtacatgtgcttttagatactt |
39274751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 279 - 565
Target Start/End: Original strand, 6222224 - 6222522
Alignment:
| Q |
279 |
cttcatttttactttacctccagaatttgtgtttaattatgtgatttgtcctctt---tgtatagtcagcgtcatttagtaattgatggcatatgggaag |
375 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
6222224 |
cttcatttttactttaccttcagaatttgtgtttaagaatgtgagttgtcctcttctttgtatagaccgcgtcatttagtaattgatggcatatgagaag |
6222323 |
T |
|
| Q |
376 |
tattctttacaatggttgttttgcttcactctttagttcttgaaattgaatcctgcaa-----------tgaatttcataatctattccacacaaagatt |
464 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6222324 |
tattctttacaatggctgttttgcttcactctttagttcttgcaattgaatcctgcaagagtaagtaattgaatttcataatctattccacacaaagatt |
6222423 |
T |
|
| Q |
465 |
gaaagaataaggagaggaaaatacaaaactaacttgatgagtagcttccaattctttaatttgtttataaagagag-aaaaattaaggaaagcatctcaa |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
6222424 |
gaaagaataaggagaggaaaatacaaaactaacttgatgagtagctttgaattcttta---tgttgataaagagagaaaaaattaagaaaagcatctcaa |
6222520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 6221977 - 6222173
Alignment:
| Q |
8 |
aatgttttagtaattacaaaagttaatgttttgtatcaaattccctcttgctgtcatcaagctcacatagccaattcctatgaaatctatcaaacttatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6221977 |
aatgttttagtaattacaaaagttaatgttt-gtatcaaattccctcttgctgtcatcaagctcacatagccaattcccatgaaatctatcaaacttatc |
6222075 |
T |
|
| Q |
108 |
ctaaagtcaaattgtgac--agaaaaatgcattttcattggtatgtacatgtgcttttagctactttctaattggcacctcagcgagcaatgtcacaa |
203 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6222076 |
ctaaagtcaaattgagacaaaaaaaaatgcattttcattggtatgtacatgtgctcttagctactttctaaatggcacctcagcgagcaatgtcacaa |
6222173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 26443070 - 26443266
Alignment:
| Q |
8 |
aatgttttagtaattacaaaagttaatgttttgtatcaaattccctcttgctgtcatcaagctcacatagccaattcctatgaaatctatcaaacttatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26443070 |
aatgttttagtaattacaaaagttaatgttt-gtatcaaattccctcttgctgttatcaagctgacatagccaattcccatgaaatctatcaaacttatc |
26443168 |
T |
|
| Q |
108 |
ctaaagtcaaattgtgacagaaaaatgcattttcattggtatgtacatgtgcttttagctactttctaattggcacctcagcgagcaatgtcacaacc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26443169 |
ctaaagtcaaattgtgacagaaaaatgcactttcattggtatgtacatgtgcttttagatactttctaattggcaccttagcgagcaatgtcacaacc |
26443266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 279 - 409
Target Start/End: Original strand, 26443312 - 26443445
Alignment:
| Q |
279 |
cttcatttttactttacctccagaatttgtgtttaattatgtgatttgtcctctt---tgtatagtcagcgtcatttagtaattgatggcatatgggaag |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
26443312 |
cttcatttttactttacctccagaatttgtgtttacctatgtgatttgtcctcttctttgtatagtccgcgtcatttagtaattgatggtatatgggaag |
26443411 |
T |
|
| Q |
376 |
tattctttacaatggttgttttgcttcactcttt |
409 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |
|
|
| T |
26443412 |
tattctttacaatggctgatttgcttcactcttt |
26443445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University