View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4375-Insertion-8 (Length: 804)
Name: NF4375-Insertion-8
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375-Insertion-8 |
 | |
|
| [»] chr8 (12 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] scaffold0021 (3 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 702; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 7 - 804
Target Start/End: Complemental strand, 5315482 - 5314687
Alignment:
| Q |
7 |
aaccactccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315482 |
aaccactccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgattcgcattagttcccttgcagttgtttgataatattgc |
5315383 |
T |
|
| Q |
107 |
ttttaggcagaaaaaacacgaaaattaagaagttctaggtcagtgatctagccatggaaagaaaatgaggaatcaagaaaatttggaaagtggataataa |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315382 |
ttttaggcagaaaagacacgaaaattaagaagttct-ggtcagtgatctagccatggaaagaaaatgaggaatcaagaaaatttggaaagtggataataa |
5315284 |
T |
|
| Q |
207 |
acctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaatttcaattg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315283 |
acctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaatttcaattg |
5315184 |
T |
|
| Q |
307 |
ccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctgcaagagagacgatattgatataaatctggg |
406 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5315183 |
ccacagataatgcaaagaggatggaatgaggcatgtccaagtccaaaatacttaaatctgatgaagcctgcaagagagac-atattgatataaatctggg |
5315085 |
T |
|
| Q |
407 |
ggacgattagaaagtgatgaatgaacagaacaaatatatatagattttttctccttggacggaatnnnnnnnntttactcgggttaaaatccttcctaca |
506 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5315084 |
ggatgattagaaagtgatgaatgaacagaacaaatatatatagattttttctcattggggggaataaaaaaatcttactcgggttaaaatccttcctaca |
5314985 |
T |
|
| Q |
507 |
ggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatccgagatatgcattcaagt |
606 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5314984 |
ggggtcgaatcaaagaaaagcgttggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatccgagatatgcattcaagt |
5314885 |
T |
|
| Q |
607 |
aagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgtttggaatttcaatggcaatagc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5314884 |
aagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgttttgaatttcaatggcaatagc |
5314785 |
T |
|
| Q |
707 |
aagccaaaaggaggatgcagtctgcaaaactataaatgtggattgtgctaacatgataaaacacaacatgaatgatcccctggaaaaagaaatataat |
804 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5314784 |
aagccaaaaggaggatgtagtctgcaaaactataaatgcggattgtgctaacatgataaaacacaacatgaatgatcccctggaaaaagaaatataat |
5314687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 5288861 - 5289226
Alignment:
| Q |
11 |
actccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgctttt |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| | |||||||||||||||| |
|
|
| T |
5288861 |
actccaagtgatgtctcagctgcaaaattcatgactggagctttggtggttccgttgatccgtattagttcacttgcagtggcttgataatattgcttta |
5288960 |
T |
|
| Q |
111 |
aggcagaaaaaacacgaaaattaagaagttc-taggtcagtgatctagccatggaaagaaaatgaggaatcaagaaaatttggaaagtggataataaacc |
209 |
Q |
| |
|
||| | || ||| | ||| |||||||||||| ||| ||| ||||||| || || | | | ||||||| |||||||||| || ||||| || |||||| |
|
|
| T |
5288961 |
aggaataataaaaaggaagattaagaagttcttagctcaatgatctaaccttgtacatagaatgagggatcaagaaaacttagaaagcgg---ctaaacc |
5289057 |
T |
|
| Q |
210 |
tgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaatttcaattgcca |
309 |
Q |
| |
|
|||| | |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||| || |||||||| |||| || ||||||||| | |
|
|
| T |
5289058 |
tgaacgtatattgatgcaaccattgcaggaacagcaacaatgagaacttgccatgtgactgaagccactacacaaattatgaccaaaacttcaattgcta |
5289157 |
T |
|
| Q |
310 |
cagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctgca |
378 |
Q |
| |
|
||| || ||||| |||||||| ||| || || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
5289158 |
ttgatgctacaaaggtgatggaataaggtatatcaaagtccaaaatactcaaatctgatgaagcctgca |
5289226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 5280844 - 5281212
Alignment:
| Q |
7 |
aaccactccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgc |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| | |||||| |||||| |
|
|
| T |
5280844 |
aaccactccaagtgatgtctcagctgcaaaattcataactggtgctttggtggttccattgatccgtattagttcccttgcagcggcttgatagtattgc |
5280943 |
T |
|
| Q |
107 |
ttttaggcagaaaaaacacgaaaattaagaagttc-taggtcagtgatctagccatggaaagaaaatgaggaatcaagaaaatttggaaagtggataata |
205 |
Q |
| |
|
||| ||| ||||| || | ||| |||||||| || || || ||||||| | || | | | |||||||||||||||||| || |||||||| ||| |
|
|
| T |
5280944 |
tttgaggaagaaagaa-aggaaggttaagaagatcctacctcgatgatctaacgttgtacatagaatgaggaatcaagaaaacttagaaagtgggtaa-- |
5281040 |
T |
|
| Q |
206 |
aacctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaatttcaatt |
305 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
5281041 |
-acctgaacgtatattgatgcaaccattacaggaacagcaacaatgagaacttgccatgtgactgaaaccattatacaaattaccaccaaaatttcaatt |
5281139 |
T |
|
| Q |
306 |
gccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctgca |
378 |
Q |
| |
|
|| ||| || ||||| |||||||| ||| || || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
5281140 |
gctgttgatgctacaaaggtgatggaataaggtatatcaaagtccaaaatactcaaatctgatgaagcctgca |
5281212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 5308505 - 5308137
Alignment:
| Q |
7 |
aaccactccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgc |
106 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| || |
|
|
| T |
5308505 |
aaccactccatgtgatgtctcagctgcaaaattcattattggagctttggtggttccattgatccgaattagttcccttgcagtggcttgatagtatcgc |
5308406 |
T |
|
| Q |
107 |
ttttaggcagaaaaa------ac--acgaaaattaagaagttctaggtcagtgatctagccatggaaagaaaatgaggaatcaagaaaatttggaaagtg |
198 |
Q |
| |
|
|||||| |||||| || | ||| ||||||||||||| | |||| |||| |||||| ||| ||||||||||| |||||||||| |
|
|
| T |
5308405 |
ttttagaaggaaaaagaaaagactaaagaagattaagaagttct-------tactctaaccattgaaagataattgttaatcaagaaaaattggaaagtg |
5308313 |
T |
|
| Q |
199 |
gataataaacctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaat |
298 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| || ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
5308312 |
gataataaacctgaacgaatattgatgcaaccgttgcaggaacagcagcaatgagaacttgccatgtgactgaaaccattatacaaattaccaccaaaat |
5308213 |
T |
|
| Q |
299 |
ttcaattgccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcc |
374 |
Q |
| |
|
||||| || | |||| || |||| |||||||| ||| || || ||||| |||||||| ||||||||||||||| |
|
|
| T |
5308212 |
ttcaagtgatatagatgctacaaaagtgatggaataaggtatatcaaagtctaaaatactcaaatctgatgaagcc |
5308137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 14948084 - 14948465
Alignment:
| Q |
11 |
actccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgctttt |
110 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| || | |||||||||||||||| |
|
|
| T |
14948084 |
actccaagcgatgtctcagctgcaaaattcatgacaggagctttggtggttccgttgatccgtattagttcccttgaagaagcttgataatattgctttc |
14948183 |
T |
|
| Q |
111 |
aggcagaaaaaacacgaaa--------at-taagaagttctaggtcagtgatctagccatggaaagaaaatgagg------aatcaagaaaatttggaaa |
195 |
Q |
| |
|
||| |||||||| | ||| || |||||| || || ||| |||| | | |||||||||||||||| |||||| |||||| | ||| |
|
|
| T |
14948184 |
aggaagaaaaaaaaacaaataaagataatataagaacttaaagctcaatgattcaacgatggaaagaaaatgagattatgaaatcaaaaaaatt-gtaaa |
14948282 |
T |
|
| Q |
196 |
gtggataataaacctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccag |
295 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14948283 |
gtggataacaaacctgaatatatattgatgcaaccattgcaggaacagcaacaataagaacttgccatgtgactgaaaccattatacaaattatcaccaa |
14948382 |
T |
|
| Q |
296 |
aatttcaattgccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctgca |
378 |
Q |
| |
|
|||||||||| | |||||| || ||||| ||||||| ||| || || |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14948383 |
aatttcaattactacagatgctacaaaggtgatggaaaaaggtatatcaaagtccaaaatactcaaatctgatgacgcctgca |
14948465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 489 - 717
Target Start/End: Original strand, 14948546 - 14948774
Alignment:
| Q |
489 |
gttaaaatccttcctacaggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatc |
588 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
14948546 |
gttaaaattcttcccacaggagttgaatcaaagaaaagcattggagcattgaagatagctgtagtgaagcttgagaagaaagcagcggaagcttttaatc |
14948645 |
T |
|
| Q |
589 |
cgagatatgcattcaagtaagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgtttgg |
688 |
Q |
| |
|
| ||| |||| ||||||||| ||| | || |||||||| | |||| |||||||| ||||||| ||||||||||||||| ||||| ||| ||| ||||| |
|
|
| T |
14948646 |
caagaagtgcagtcaagtaagtccttatatgtacaaacacgacgctaacaaaagaaattaatgagtaaactccaatcaagttggcattagttacttttgg |
14948745 |
T |
|
| Q |
689 |
aatttcaatggcaatagcaagccaaaagg |
717 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
14948746 |
aatttcaatggctatagcaagccaaaagg |
14948774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 492 - 780
Target Start/End: Original strand, 5289344 - 5289632
Alignment:
| Q |
492 |
aaaatccttcctacaggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatccga |
591 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| || |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| | |
|
|
| T |
5289344 |
aaaatccttccaacaggagttgaatcaaagaaaagcatcggagcattgaagatagctgtagtgaagcttgagaagaaaacagtagaagcttttaatccca |
5289443 |
T |
|
| Q |
592 |
gatatgcattcaagtaagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgtttggaat |
691 |
Q |
| |
|
| |||| ||||||||||||| | ||| ||||| | |||| ||||||| |||||| ||||||||||||||||| |||| ||| ||| |||||||| |
|
|
| T |
5289444 |
aaagtgcagtcaagtaagaccttacataaacaaaagcagcactagaaaaagaaattaatgcataaactccaatcaaggcggcattagttacttttggaat |
5289543 |
T |
|
| Q |
692 |
ttcaatggcaatagcaagccaaaaggaggatgcagtctgcaaaactataaatgtggattgtgctaacatgataaaacacaacatgaatg |
780 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||| |||||| | ||||| ||||||| ||||||||| | ||||| |||||||| |
|
|
| T |
5289544 |
ttcaatggcaatagcaagccaataggttgatgaagtttgcaaagccataaaaccagattgtgataacatgatcatacacagcatgaatg |
5289632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 489 - 734
Target Start/End: Complemental strand, 5308040 - 5307795
Alignment:
| Q |
489 |
gttaaaatccttcctacaggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatc |
588 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
5308040 |
gttaaaatccttcctactggagttgaatcaaagaaaagcattggagcattgaagatagctgtagtgaagcttgagaagaaagcagtagaagcttttaatc |
5307941 |
T |
|
| Q |
589 |
cgagatatgcattcaagtaagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgtttgg |
688 |
Q |
| |
|
| | | |||| |||||||||| || | ||||| ||| | |||| ||||||| |||||| ||||||||||||||||||| || | | ||| ||||| |
|
|
| T |
5307940 |
ccaaaagtgcagtcaagtaagatcttacatatataaaagcagcactagaaaaagaaattaatgcataaactccaatcaaggtgacattggttacttttgg |
5307841 |
T |
|
| Q |
689 |
aatttcaatggcaatagcaagccaaaaggaggatgcagtctgcaaa |
734 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
5307840 |
aatttcaatggttatagcaagccaaaaggttgatgaagtctgcaaa |
5307795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 489 - 776
Target Start/End: Original strand, 5281309 - 5281596
Alignment:
| Q |
489 |
gttaaaatccttcctacaggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatc |
588 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| || ||||| |||||||||||| | || |||||||| || | ||| ||||||||||||||| |
|
|
| T |
5281309 |
gttaaaatccttcctacaggagttgaatcaaagaaaagcataggagcgttgaagatagctgtcgtaaagcttgaaaaaatagcagtagaagcttttaatc |
5281408 |
T |
|
| Q |
589 |
cgagatatgcattcaagtaagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgtttgg |
688 |
Q |
| |
|
| | | |||| ||||||||||||| | ||||||||| | |||| ||||||| |||||| |||||||||||||||||||| | ||| ||| ||||| |
|
|
| T |
5281409 |
ccaaaagtgcagtcaagtaagaccttaaatatacaaaagcagcactagaaaaagaaattaatgcataaactccaatcaaggtggtattagttacttttgg |
5281508 |
T |
|
| Q |
689 |
aatttcaatggcaatagcaagccaaaaggaggatgcagtctgcaaaactataaatgtggattgtgctaacatgataaaacacaacatg |
776 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||| ||| |||||| | ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5281509 |
aatttcaatgccaatagcaagccaataggttgatgaagtttgcaaagccataaaaccagattgtgctaacatgattaaacacaacatg |
5281596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 489 - 734
Target Start/End: Complemental strand, 15126806 - 15126561
Alignment:
| Q |
489 |
gttaaaatccttcctacaggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagcttttaatc |
588 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
15126806 |
gttaaaattcttcctacaggagttgaatcaaagaaaagcattggagcattgaagatagatgtagtgaagcttgagaagaaagccgtcgaagcttttaatc |
15126707 |
T |
|
| Q |
589 |
cgagatatgcattcaagtaagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagatacgtttgg |
688 |
Q |
| |
|
| | | |||| ||||||||||| | ||||||||| || | |||| || ||| ||||| |||||||||||||||||||| | || ||| ||||| |
|
|
| T |
15126706 |
ccaaaagtgcagcaaagtaagaccttacatatacaaaagaagtactagaaatagagagtaatgcataaactccaatcaaggtggtatcagttacttttgg |
15126607 |
T |
|
| Q |
689 |
aatttcaatggcaatagcaagccaaaaggaggatgcagtctgcaaa |
734 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
15126606 |
aatttcaatggctgtagcaagccaaaagttcgatgaagtctgcaaa |
15126561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 15127271 - 15127169
Alignment:
| Q |
7 |
aaccactccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgc |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||| | |
|
|
| T |
15127271 |
aaccactccaagtgatgtctcggctgcaaaattcatgactggagctttggtggttccgttgatccgtattagttcccttgcagtggcttgataatatttc |
15127172 |
T |
|
| Q |
107 |
ttt |
109 |
Q |
| |
|
||| |
|
|
| T |
15127171 |
ttt |
15127169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 205 - 378
Target Start/End: Complemental strand, 15127098 - 15126925
Alignment:
| Q |
205 |
aaacctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaatttcaat |
304 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| | || | |||| || |||| || |||||| |
|
|
| T |
15127098 |
aaacctgaatgaatattaatgcaaccattgcaggaacagcaacaatgagaacttgccatgtgactgaagcaatcacaaaaatcatcaccaaaacttcaat |
15126999 |
T |
|
| Q |
305 |
tgccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctgca |
378 |
Q |
| |
|
||||||| | || || || || ||||| ||| || || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
15126998 |
tgccacaattgctacacaggtgagggaataaggtatatcaaagtccaaaatactcaaatctgatgaagcctgca |
15126925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 481 - 804
Target Start/End: Original strand, 31525386 - 31525709
Alignment:
| Q |
481 |
ttactcgggttaaaatccttcctacaggggtcgaatcaaagaaaagaattggagcattgaagatagctttagtgaagcttgagaagaaggcattagaagc |
580 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||| ||||| | ||||||| ||||||||||||| |||||||||| |||||| ||||| ||||||| |
|
|
| T |
31525386 |
ttactcgggttaaaatccttccaaccggcgtagaatcgaagaacatcattggagaattgaagatagctgtagtgaagctagagaagtaggcaatagaagc |
31525485 |
T |
|
| Q |
581 |
ttttaatccgagatatgcattcaagtaagacctcagatatacaaacaaaatgctagcaaaagaagttaatgaataaactccaatcaaggtggcactagat |
680 |
Q |
| |
|
|||||||||||| || ||||||||||||| | ||||||||||| || | || |||||| ||||||||||||||||||||||| ||||||| | | |
|
|
| T |
31525486 |
atttaatccgagacgcgccatcaagtaagaccttatatatacaaacataacaccagtgaaagaaattaatgaataaactccaatcaagttggcactcgtt |
31525585 |
T |
|
| Q |
681 |
acgtttggaatttcaatggcaatagcaagccaaaaggaggatgcagtctgcaaaactataaatgtggattgtgctaacatgataaaacacaacatgaatg |
780 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||||||| ||||||||||||||| | ||||| | ||||||||||||| |||||||||| ||| |||| |
|
|
| T |
31525586 |
acttttggaatttcgatcgcaatagcaagccaaaaggatgatgcagtctgcaaagccataaaagcagattgtgctaacacaataaaacacagcatcaatg |
31525685 |
T |
|
| Q |
781 |
atcccctggaaaaagaaatataat |
804 |
Q |
| |
|
||||| ||||| |||| ||||||| |
|
|
| T |
31525686 |
atcccttggaataagatatataat |
31525709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 205 - 383
Target Start/End: Original strand, 31525138 - 31525316
Alignment:
| Q |
205 |
aaacctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaaccattatgcaaattattaccagaatttcaat |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
31525138 |
aaacctgaatgaatatcgatgccaccattgccggaacagcaacaattagaacttgccatgtgactgaagccattatgcaaattattaccagaacttcaat |
31525237 |
T |
|
| Q |
305 |
tgccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctgcaagaga |
383 |
Q |
| |
|
||| || |||| |||||| ||| || ||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31525238 |
tgctactgataaggcaaagtggacggcatgaggcatatcaaagtccaaaatactcaaatctgatgaagcctgcaagaga |
31525316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 31524951 - 31525068
Alignment:
| Q |
7 |
aaccactccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccgcattagttcccttgcagttgtttgataatattgc |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
31524951 |
aaccactccaagtgatgtctcagctgcaaaattcatgactggtgctttggtggttccgttgatccgcattagttcccttgcagttgcttgataataatgc |
31525050 |
T |
|
| Q |
107 |
ttttaggcagaaaaaaca |
124 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
31525051 |
ttttgggcacaaaaaaca |
31525068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 177 - 378
Target Start/End: Complemental strand, 113711 - 113510
Alignment:
| Q |
177 |
aatcaagaaaatttggaaagtggataataaacctgaatgaatattgatgccaccattacaggaacggcaacaatgagaacttgccatgtgactgaaacca |
276 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||| |||||||||| |||||| ||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
113711 |
aatcaagaaaaattgtaaagtggataacaaacctgaatatatattgatgcaaccattgcaggaacagaaacaataagaacttgccatgtgactgaaacca |
113612 |
T |
|
| Q |
277 |
ttatgcaaattattaccagaatttcaattgccacagatactgcaaagaggatggaatgaggcatgtcgaagtccaaaatacttaaatctgatgaagcctg |
376 |
Q |
| |
|
|||| |||||||| |||| |||||||||| |||||||| || ||||| ||||||| || || || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
113611 |
ttatacaaattatcaccaaaatttcaattaccacagatgctacaaaggtgatggaaaaagatatatcaaagtccaaaatactcaaatctgatgacgcctg |
113512 |
T |
|
| Q |
377 |
ca |
378 |
Q |
| |
|
|| |
|
|
| T |
113511 |
ca |
113510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 113904 - 113843
Alignment:
| Q |
11 |
actccaagtgatgtctctgctgcaaaattcatgactggagctttggtggttccattgatccg |
72 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
113904 |
actccaagcgatgtcttggctgcaaaattcatgacaggagctttggtggttccgttgatccg |
113843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 113904 - 113780
Alignment:
| Q |
11 |
actccaagtgatgtctctgctgcaaaattcatgactggagctttggtgg-------------ttccattgatccgcattagttcccttgcagttgtttga |
97 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| || |||||| |
|
|
| T |
113904 |
actccaagcgatgtcttggctgcaaaattcatgacaggagctttggtggttccgttgatccgttccgttgatccgcattagttcccttgaagaagtttga |
113805 |
T |
|
| Q |
98 |
taatattgcttttaggcagaaaaaa |
122 |
Q |
| |
|
|||||||| ||||||| |||||||| |
|
|
| T |
113804 |
taatattgtttttaggaagaaaaaa |
113780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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