View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4375_high_1 (Length: 729)

Name: NF4375_high_1
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4375_high_1
NF4375_high_1
[»] chr7 (1 HSPs)
chr7 (19-714)||(449629-450322)
[»] chr3 (14 HSPs)
chr3 (81-316)||(9329809-9330041)
chr3 (81-239)||(9336513-9336671)
chr3 (163-303)||(9395314-9395454)
chr3 (109-224)||(41985629-41985744)
chr3 (162-225)||(9695615-9695678)
chr3 (109-224)||(9343846-9343961)
chr3 (149-224)||(41980895-41980970)
chr3 (178-226)||(9756450-9756498)
chr3 (185-224)||(9485969-9486008)
chr3 (185-224)||(13864281-13864320)
chr3 (79-132)||(16011774-16011827)
chr3 (78-132)||(9412978-9413032)
chr3 (178-224)||(9686753-9686799)
chr3 (167-232)||(16011695-16011760)
[»] chr6 (6 HSPs)
chr6 (149-232)||(7025797-7025880)
chr6 (149-225)||(7012861-7012937)
chr6 (109-233)||(7041497-7041621)
chr6 (149-232)||(7029854-7029937)
chr6 (149-224)||(7046880-7046955)
chr6 (149-233)||(9170858-9170942)
[»] chr5 (2 HSPs)
chr5 (160-227)||(18571163-18571230)
chr5 (109-233)||(33541653-33541777)
[»] chr8 (1 HSPs)
chr8 (167-224)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 19 - 714
Target Start/End: Complemental strand, 450322 - 449629
Alignment:
Q  19 aaaaacactcatattacggtccatgcaactaagaccgtgggaggcaaaataatctgtagtaaagatcacaccattcccatttgttaaacccaaatccgaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450322 aaaaacactcatattacggtccatgcaactaagaccgcgggaggcaaaataatctgtagtaaagatcacaccattcccatttgttaaacccaaatccgaa 450223  T
Q  119 gcagaagcagaa------aaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcc 212  Q
    ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  450222 gcagaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcc 450123  T
Q  213 taaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctccc 312  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450122 taaacacatcaatccatacagt--------caccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaagaattttcttctccc 450031  T
Q  313 accataccacgggtcagcctgagccatcaaatgaatgctcatgtctggtccaatcatcacagtccgattggtactgtctaccacacaaggccttccttta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  450030 accataccacgggtcagcctgagccatcaaatgaatgctcatgtctggtccaatcatcacagtctgattggtactgtctaccacacaaggccttccttta 449931  T
Q  413 aaagcacagttcatgactttaccaggggttggcgtgttggggatcgtcgtcaaatggtcgtccccgcaacggaacataacaggctttcgatttttctcag 512  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  449930 aaagcacagttcatgactttacaaggggttgacatgttggggatcgtcgtcaaatggtcgtccccgcaacggaacataacaggcttttgatttttctcag 449831  T
Q  513 ttgtgacgattacaaaaggttgttcctcctgacacaaggcaacaccaaacttacagtcagtacgggtagtctgactattttgaggcaaggtgctctgatg 612  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  449830 ttgtgacgattacaaaaggttgttcctcctgacacgaggcaacaccaaacttacagtcagtacgggtattctgactattttgaggcaaggtgctccgatg 449731  T
Q  613 gaagtagaacatgtgtccaatatggagtacggagagtttgttgaagtcaagcacattaccatcgaaatgtgatgataaaggttcgttacgtaatgagaaa 712  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  449730 gaagtagaacatgtgtccaatatgaagtacggagagtttgttgaagtcaagcacattaccatcgaaatgtgatgataaaggttcgttacgtaatgagaaa 449631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 81 - 316
Target Start/End: Original strand, 9329809 - 9330041
Alignment:
Q  81 agatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaa 180  Q
    |||| |||| ||||||||| |  |||||||| || ||||||||||||||||| |||||   ||  || ||||||||||   ||||||||||||||| |||    
T  9329809 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaa 9329908  T
Q  181 cttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatcactagcaacaactggaac 280  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| | |   |||  ||| | |  ||| ||||||||||  |||    
T  9329909 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacgataa---ttttcatatctatccaccagcaacaactcaaac 9330005  T
Q  281 tcactactcgccaccaagaattttcttctcccacca 316  Q
    ||||||||| | ||||||||||| ||| ||||||||    
T  9330006 tcactactctcgaccaagaatttacttttcccacca 9330041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 9336513 - 9336671
Alignment:
Q  81 agatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaa 180  Q
    |||| |||| ||||||||| |  |||||||| || ||||||||||||||||| ||| |   ||  || ||||||||||   ||||||||||||||||||     
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcag 9336612  T
Q  181 cttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacac 239  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  9336613 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac 9336671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 9395314 - 9395454
Alignment:
Q  163 atctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatc 262  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| | ||| ||||   |  |    
T  9395314 atctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatcc 9395413  T
Q  263 actagcaacaactggaactcactactcgccaccaagaattt 303  Q
    |||||||||||||| || |||||| || | |||||||||||    
T  9395414 actagcaacaactgaaagtcactagtctcgaccaagaattt 9395454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 41985629 - 41985744
Alignment:
Q  109 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 208  Q
    |||||||||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||| |||||||||||| || |||||||||||||||    
T  41985629 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 41985728  T
Q  209 agcctaaacacatcaa 224  Q
    || || ||||||||||    
T  41985729 agtctgaacacatcaa 41985744  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 9695678 - 9695615
Alignment:
Q  162 tatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 225  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  9695678 tatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaat 9695615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 9343846 - 9343961
Alignment:
Q  109 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 208  Q
    |||||||||||||||||||||||| ||| |   ||  || ||||||||||   |||| |||||| | || ||||| |||||||| |||||| ||||||||    
T  9343846 caaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatca 9343945  T
Q  209 agcctaaacacatcaa 224  Q
    ||| ||||||||||||    
T  9343946 agcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 41980895 - 41980970
Alignment:
Q  149 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 224  Q
    |||||||||| | |||| |||||| |||||||||||||||| || ||||| |||| | ||||||||||||||||||    
T  41980895 aagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 9756450 - 9756498
Alignment:
Q  178 caacttgacccactttttctccttctcatcaagcctaaacacatcaatc 226  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  9756450 caacttgacccaccttttctctttctcatcaagcctatacacatcaatc 9756498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 9486008 - 9485969
Alignment:
Q  185 acccactttttctccttctcatcaagcctaaacacatcaa 224  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9486008 acccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 13864281 - 13864320
Alignment:
Q  185 acccactttttctccttctcatcaagcctaaacacatcaa 224  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13864281 acccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 16011827 - 16011774
Alignment:
Q  79 aaagatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaa 132  Q
    |||||| |||| ||||||||| | || |||||||||||||||||||||||||||    
T  16011827 aaagattacacaattcccattcgctacacccaaatccgaagcagaagcagaaaa 16011774  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 9412978 - 9413032
Alignment:
Q  78 taaagatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaa 132  Q
    |||| ||||||| |||||||||| | ||||||||||||||||| ||| |||||||    
T  9412978 taaatatcacacaattcccatttctcaaacccaaatccgaagcggaaacagaaaa 9413032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 9686753 - 9686799
Alignment:
Q  178 caacttgacccactttttctccttctcatcaagcctaaacacatcaa 224  Q
    ||||||||||||||| ||||| |||||||||||||| || |||||||    
T  9686753 caacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 16011760 - 16011695
Alignment:
Q  167 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 232  Q
    |||||||| | ||| || ||||| || |||||||||||||| |||| |||||||||||||| ||||    
T  16011760 cctaaattaggcaatttaacccaattcttctccttctcatcgagcccaaacacatcaatccttaca 16011695  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 7025797 - 7025880
Alignment:
Q  149 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 232  Q
    ||||||||||   ||||||||||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7025797 aagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 7012861 - 7012937
Alignment:
Q  149 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 225  Q
    |||||||||||  ||||||||||| | |||||||| |||||||| ||||||||||||| |||| |||||| ||||||    
T  7012861 aagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaat 7012937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 7041497 - 7041621
Alignment:
Q  109 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 208  Q
    |||||||||||||||| |||| || ||| | |  || || ||||||||||   |||| |||||| | |||||||| |||||||| ||||||||||||| |    
T  7041497 caaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcatta 7041596  T
Q  209 agcctaaacacatcaatccatacag 233  Q
    ||  |||||| ||||||||||||||    
T  7041597 agtttaaacaaatcaatccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  149 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 232  Q
    ||||||||||   |||| || ||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 7046880 - 7046955
Alignment:
Q  149 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 224  Q
    |||||||||| | |||| |||||| |||| ||||| |||||||| ||||||||||||| |||| |||||| |||||    
T  7046880 aagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 9170858 - 9170942
Alignment:
Q  149 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 233  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||||| |||| |||||| |||||||| |||||    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacag 9170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 18571163 - 18571230
Alignment:
Q  160 tgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatcc 227  Q
    |||||| |||||| ||||||| || |||||||| |||||||||||||||||| |||| | ||||||||    
T  18571163 tgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatcc 18571230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 33541653 - 33541777
Alignment:
Q  109 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 208  Q
    |||||| |||||||| |||||||||||| |   | | |||||||||||||   ||||||||||| || | ||||| |||||||   |||||||||||| |    
T  33541653 caaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatta 33541752  T
Q  209 agcctaaacacatcaatccatacag 233  Q
    ||| |||||| || ||||| |||||    
T  33541753 agcttaaacaaatgaatccttacag 33541777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 13170741 - 13170684
Alignment:
Q  167 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 224  Q
    |||||| ||| |||||||||||| || |||||||| |||||||| || ||||||||||    
T  13170741 cctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaa 13170684  T

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