View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375_high_12 (Length: 222)
Name: NF4375_high_12
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 33269627 - 33269830
Alignment:
| Q |
2 |
cattatttgtgtatctgtgctgcagttggaagagaaattgttgaactatgcctcgaccgtatcagaaaattagcagacaattgcactggattgcaaggat |
101 |
Q |
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| T |
33269627 |
cattatttgtgtatctgtgctgcagttggaagagaaattgttgaactatgcctcgatcgtatcagaaaattagcagacaattgcactggattgcaaggat |
33269726 |
T |
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| Q |
102 |
tctttgttttcaatgctgttggtggaggtactggttctggtttgggatcattacttttggaaaggttgtctgttgattatggcaaaaagtctaaacttgg |
201 |
Q |
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| T |
33269727 |
tctttgttttcaatgctgttggtggaggtactggttctggtttgggatcgttacttttggaaaggttgtctgtcgattatggcaaaaagtctaagcttgg |
33269826 |
T |
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| Q |
202 |
tttt |
205 |
Q |
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|||| |
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| T |
33269827 |
tttt |
33269830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 10032964 - 10032785
Alignment:
| Q |
22 |
tgcagttggaagagaaattgttgaactatgcctcgaccgtatcagaaaattagcagacaattgcactggattgcaaggattctttgttttcaatgctgtt |
121 |
Q |
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| T |
10032964 |
tgcagttggaaaacaagttgaagaactatgcctcgatcgaatccgaaaattagctgaaaattgcactggcttgcaaggatttttggtttttaatgctgtt |
10032865 |
T |
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| Q |
122 |
ggtggaggtactggttctggtttgggatcattacttttggaaaggttgtctgttgattatggcaaaaagtctaaacttgg |
201 |
Q |
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| T |
10032864 |
ggcggtggaactggttctggtttaggatcattacttcttgagagattatctgtagattatgggaaaaagtcaaaacttgg |
10032785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 40378145 - 40378031
Alignment:
| Q |
24 |
cagttggaagagaaattgttgaactatgcctcgaccgtatcagaaaattagcagacaattgcactggattgcaaggattctttgttttcaatgctgttgg |
123 |
Q |
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||||||||| |||||||||||| ||||| | ||||| |||||||| | |||||||| |||||||| | ||||| || | |||||||||||||| || |
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| T |
40378145 |
cagttggaaaagaaattgttgatgtatgcttggaccgcatcagaaagcttgcagacaactgcactggtctccaaggctttctggttttcaatgctgtagg |
40378046 |
T |
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| Q |
124 |
tggaggtactggttc |
138 |
Q |
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| T |
40378045 |
tggaggcactggttc |
40378031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 51752609 - 51752500
Alignment:
| Q |
38 |
attgttgaactatgcctcgaccgtatcagaaaattagcagacaattgcactggattgcaaggattctttgttttcaatgctgttggtggaggtactggtt |
137 |
Q |
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|||||||| |||||||||||| | ||| |||| ||||||| || || ||||| ||||||| ||||| || ||||||||||| ||||| || || || | |
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| T |
51752609 |
attgttgatctatgcctcgacaggatccgaaagctagcagataactgtactggtctgcaaggtttcttggtgttcaatgctgtgggtggtggaaccggat |
51752510 |
T |
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| Q |
138 |
ctggtttggg |
147 |
Q |
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|||||||||| |
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| T |
51752509 |
ctggtttggg |
51752500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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