View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4375_high_2 (Length: 478)

Name: NF4375_high_2
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4375_high_2
NF4375_high_2
[»] chr5 (12 HSPs)
chr5 (14-435)||(33802864-33803303)
chr5 (14-435)||(33731485-33731924)
chr5 (14-250)||(6145414-6145650)
chr5 (14-249)||(6125996-6126231)
chr5 (54-266)||(6151818-6152030)
chr5 (296-467)||(28755376-28755565)
chr5 (279-469)||(28755573-28755779)
chr5 (23-118)||(6138494-6138589)
chr5 (399-441)||(6151703-6151745)
chr5 (274-307)||(32621632-32621665)
chr5 (188-224)||(6138376-6138412)
chr5 (399-463)||(6145261-6145325)


Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 33802864 - 33803303
Alignment:
Q  14 aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33802864 aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggcgatctactt 33802963  T
Q  114 ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac 213  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33802964 ctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac 33803063  T
Q  214 tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  33803064 tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcggatataaggaggataatga 33803163  T
Q  314 aatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg------------------gtagtagtagga 395  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                  ||||||||||||    
T  33803164 catattatctctagccgagatggacgacacacttctcggtcctccattgataaattgagaagtgttgttgccttctaaagcattgtgagtagtagtagga 33803263  T
Q  396 atgatgctaatatttgacccaaaaagtcttaaatatattg 435  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33803264 atgatgctaatatttgacccaaaaagtcttaaatatattg 33803303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 33731485 - 33731924
Alignment:
Q  14 aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  33731485 aaaaggaggaggaagagtgtgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcccctctagtgaatggatcaggcgatctactt 33731584  T
Q  114 ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac 213  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33731585 ctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacagaattagcattac 33731684  T
Q  214 tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||    
T  33731685 tactatttcctacaacatctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcagatataaggaggataatga 33731784  T
Q  314 aatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg------------------gtagtagtagga 395  Q
     ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||                  ||||||||||||    
T  33731785 catattatctctagtcgagatggacgacacacttctcgatcctccattgataaattgagaagtgctgttgccttctaaaacattgtgagtagtagtagga 33731884  T
Q  396 atgatgctaatatttgacccaaaaagtcttaaatatattg 435  Q
    | ||||||||||||||||||||||||||| ||||||||||    
T  33731885 acgatgctaatatttgacccaaaaagtctaaaatatattg 33731924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 6145650 - 6145414
Alignment:
Q  14 aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt 113  Q
    |||||||||||||| |||| ||||||||||  | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  6145650 aaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctcctc 6145551  T
Q  114 ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac 213  Q
    ||||||||  ||||||||||  || ||||||||||||||| || |||| |||||||||||||| || |||||||||||||||||| ||||||  ||||||    
T  6145550 ctcttgaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattac 6145451  T
Q  214 tactatttcctacaacatctccacttctttgataatc 250  Q
    || | |||||| ||||| ||||||||||| |||||||    
T  6145450 tattgtttcctgcaacaactccacttcttggataatc 6145414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 6126231 - 6125996
Alignment:
Q  14 aaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctactt 113  Q
    |||||||||||||||||||||||||||| |  | |||   |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||    
T  6126231 aaaaggaggaggaagagtgcgtcttctgattgagcttctgtcaacttgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctattt 6126132  T
Q  114 ctcttgaatgatgaattagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattac 213  Q
    ||||| ||  ||||||||||  || ||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| ||||||  ||||||    
T  6126131 ctctttaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacattac 6126032  T
Q  214 tactatttcctacaacatctccacttctttgataat 249  Q
    || |||||||| |||||  | |||||||||||||||    
T  6126031 tattatttcctccaacaaatgcacttctttgataat 6125996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 54 - 266
Target Start/End: Complemental strand, 6152030 - 6151818
Alignment:
Q  54 tcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctacttctcttgaatgatgaattagcctgacacaactcatcattcc 153  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||   |||| ||||  || ||||||||||||| |    
T  6152030 tcaacttgtaaaccttgattagaagtttcacctctagttaatggatcatgtgatctacttctctttaaccgtgaactagcacgaaacaactcatcatttc 6151931  T
Q  154 cagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatcgga 253  Q
     || |||||||| ||||| ||||||| ||||| ||||||| |||| ||||||  |||||||||| |||||| ||||| |||||||||||||| |||| ||    
T  6151930 tagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcaga 6151831  T
Q  254 ttctacaacaggt 266  Q
    | || ||||||||    
T  6151830 tcctgcaacaggt 6151818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 28755565 - 28755376
Alignment:
Q  296 atataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgttgttg------------ 383  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||                
T  28755565 atataaggaggagaatgacatattatctctagccgagatggacgacacacttctcgatcctcctttgataaagtgagaagtgttgttgccttctaaagca 28755466  T
Q  384 ------gtagtagtaggaatgatgctaatatttgacccaaaaagtcttaaatatattgcatcactatatgggctcctttcttcattctga 467  Q
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| | |||||||||||||||||    
T  28755465 ttgtaactagtagtaggaatgatgctaatatttgacccaaaaagtattaaatatattgcatcatgatatgagatcctttcttcattctga 28755376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 279 - 469
Target Start/End: Original strand, 28755573 - 28755779
Alignment:
Q  279 tgtcctccaatagtcggatataaggaggatagtgaaatattatctctagccgagatggacgacacacttctcggtcctccattgataaagtgagaagtgt 378  Q
    ||||||||||||   | ||||||||| || | ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  28755573 tgtcctccaatatcagaatataaggaagagaatgacatattatctctagccgagatggacgacacgcttctcgatcctccattgacaaagtgagaagtgt 28755672  T
Q  379 tgttg------------------gtagtagtaggaatgatgctaatatttgacccaaaaagtcttaaatatattgcatcactatatgggctcctttcttc 460  Q
    |||||                  ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||    
T  28755673 tgttgccttctaaaacattctaagtagtagtaggaatgttgctaatatttgacccaaaaa--cttaaatatattgcatcacaatataggctcctttcttc 28755770  T
Q  461 attctgatg 469  Q
    |||||||||    
T  28755771 attctgatg 28755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 6138589 - 6138494
Alignment:
Q  23 aggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggtgatctacttctctt 118  Q
    |||||||||||||||||| ||| | | |||||||   ||||||||||||  |||||||||||||||| | |||| ||  |||||||| ||||||||    
T  6138589 aggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctt 6138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 6151745 - 6151703
Alignment:
Q  399 atgctaatatttgacccaaaaagtcttaaatatattgcatcac 441  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||    
T  6151745 atgctaatatttgtcccaaaaagtcttagatatactgcatcac 6151703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 32621632 - 32621665
Alignment:
Q  274 caatttgtcctccaatagtcggatataaggagga 307  Q
    ||||||||||||||||||| ||||||||||||||    
T  32621632 caatttgtcctccaatagttggatataaggagga 32621665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 6138412 - 6138376
Alignment:
Q  188 gaatgacgaaacggaattagcattactactatttcct 224  Q
    |||||| |||| |||||||||||||||||||||||||    
T  6138412 gaatgatgaaatggaattagcattactactatttcct 6138376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 6145325 - 6145261
Alignment:
Q  399 atgctaatatttgacccaaaaagtcttaaatatattgcatcactatatgggctcctttcttcatt 463  Q
    |||| ||||||||| ||||||||||| | ||||  ||||| || ||||||||| |||||||||||    
T  6145325 atgcgaatatttgatccaaaaagtctaagatatgctgcattacgatatgggctactttcttcatt 6145261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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