View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375_low_14 (Length: 203)
Name: NF4375_low_14
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 7056313 - 7056134
Alignment:
| Q |
14 |
accttctctgcctccacttgcttctccttctgcgcttcacacggtcttgccgttcgcgccatcgctattgaagtcaacgatgcagaactcgccttcacgg |
113 |
Q |
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| T |
7056313 |
accttctctgcctccacttgcttctccttctgcgcttcacacggccttgccgttcgcgccatcgctattgaagtcgacgacgcagaactcgccttcactg |
7056214 |
T |
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| Q |
114 |
tcagcgtaaaccacggtgcacttccatcatctcctcctgtcgttctcgaaaatggcgtcaaacttgttgaagttcatctc |
193 |
Q |
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| T |
7056213 |
tcagcgtaaaccacggcgcacttccatcatctcctcccatcgttctcgaaaacggcgtcaaacttgctgaagttcatctc |
7056134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 39642454 - 39642288
Alignment:
| Q |
11 |
ccaaccttctctgcctccacttgcttctccttctgcgcttcacacggtcttgccgttcgcgccatcgctattgaagtcaacgatgcagaactcgccttca |
110 |
Q |
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| T |
39642454 |
ccaactttctccccctccacttgcttctccttctccaactcccacggcctcaacgtccgcgccctcgctgtcgaagttgaagacgcggaactcgcttaca |
39642355 |
T |
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| Q |
111 |
cggtcagcgtaaaccacggtgcacttccatcatctcctcctgtcgttctcgaaaatggcgtcaaact |
177 |
Q |
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| T |
39642354 |
ccgtcagcgtaagctacggcgcacttccatcatctcctcccgtcgttcttgaaaatggcgtcaaact |
39642288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 39679786 - 39679962
Alignment:
| Q |
17 |
ttctctgcctccacttgcttctccttctgcgcttcacacggtcttgccgttcgcgccatcgctattgaagtcaacgatgcagaactcgccttcacggtca |
116 |
Q |
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||||| || ||||||||||||||||||| |||||| ||||| || ||||| || || | ||| |||||||| | || || ||| |||| ||||| || |
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| T |
39679786 |
ttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgctgttgaagtcgaagacgctgaagtcgctttcaccacca |
39679885 |
T |
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| Q |
117 |
gcgtaaaccacggtgcacttccatcatctcctcctgtcgttctcgaaaatggcgtcaaacttgttgaagttcatctc |
193 |
Q |
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| T |
39679886 |
gcgtaaacctcggtgcaattccatcgtctcctccggttatcctcgaaaataacgtcaaactcgcggaagttcatctc |
39679962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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