View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4375_low_3 (Length: 460)

Name: NF4375_low_3
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4375_low_3
NF4375_low_3
[»] chr8 (11 HSPs)
chr8 (1-439)||(5315476-5315912)
chr8 (229-439)||(5308499-5308709)
chr8 (229-439)||(5280640-5280850)
chr8 (231-435)||(14947878-14948082)
chr8 (229-435)||(5288653-5288859)
chr8 (232-439)||(15127265-15127472)
chr8 (21-150)||(5309054-5309183)
chr8 (2-174)||(14947262-14947433)
chr8 (21-150)||(5288049-5288178)
chr8 (1-150)||(5280302-5280451)
chr8 (1-104)||(15127672-15127775)
[»] chr6 (1 HSPs)
chr6 (17-439)||(31524520-31524957)
[»] scaffold0021 (1 HSPs)
scaffold0021 (328-395)||(113952-114019)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 5315912 - 5315476
Alignment:
Q  1 tggcaggaggctcaaatggaatgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5315912 tggcaggaggctcaaatggaacgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatattgg 5315813  T
Q  101 ggctgatgtcaaaattaaagcataataaagagacagtcccacaagtcctggagacaaagaacaggagaattgccgagaattgtcagtattagcaaaatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5315812 ggctgatgtcaaaattaaagcataataaagagacagtcccacaagtcctggagaca--gaacaggagaattgccgagaattgtcagtattagcaaaatca 5315715  T
Q  201 tgtcatcgcagatgatctcttatgcaacattattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaatt 300  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5315714 tgtcatcacatatgatctcttatgcaacattattacctggcgacacgtatccacgaggaacaagaattagcaacaaagctgcggtgatgatagttaaatt 5315615  T
Q  301 ttgaagtgcttcaatccttataaccatccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5315614 ttgaagtgcttcaatccttataaccatccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaa 5315515  T
Q  401 aatccatctaccatgttgaatgctcttacagtaaccact 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5315514 aatccatctaccatgttgaatgctcttacagtaaccact 5315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 229 - 439
Target Start/End: Complemental strand, 5308709 - 5308499
Alignment:
Q  229 attattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatc 328  Q
    |||| ||||||||||||||||||||| |||||  ||||| |||||||||||||| ||||||| ||||| |||||||| |||||||||||||| ||||| |    
T  5308709 attactacctggggacacatatccacaaggaagtagaataagcaacaaagctgcagtgatgacagttatattttgaattgcttcaatccttaaaaccacc 5308610  T
Q  329 cattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctctta 428  Q
    ||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  5308609 cattccatggccacattagaatgaaagaacaatgaagcatctgagtccacaagttttaagtaatttttgtaaaatctatctaccatgttgaatgctctta 5308510  T
Q  429 cagtaaccact 439  Q
     ||||||||||    
T  5308509 tagtaaccact 5308499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 229 - 439
Target Start/End: Original strand, 5280640 - 5280850
Alignment:
Q  229 attattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatc 328  Q
    |||||||||||| || ||||||||  |||||   ||||| |||||||||||||| ||||||| ||| || |||||||||||||||||||||| |||||||    
T  5280640 attattacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatc 5280739  T
Q  329 cattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctctta 428  Q
    |||| |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  5280740 cattgcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctctta 5280839  T
Q  429 cagtaaccact 439  Q
    |||||||||||    
T  5280840 cagtaaccact 5280850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 231 - 435
Target Start/End: Original strand, 14947878 - 14948082
Alignment:
Q  231 tattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatcca 330  Q
    |||||||||| || |||||||| |||||||  ||||| | || ||||||||| ||||||| ||| || |||||||||||||||| ||||| ||| | |||    
T  14947878 tattacctggcgatacatatccccgaggaagtagaataatcagcaaagctgcagtgatgacagtcaagttttgaagtgcttcaacccttacaactaccca 14947977  T
Q  331 ttccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctcttaca 430  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  |||||||||   ||||||||||||    
T  14947978 ttccattgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgccaaatgctcttaca 14948077  T
Q  431 gtaac 435  Q
    |||||    
T  14948078 gtaac 14948082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 229 - 435
Target Start/End: Original strand, 5288653 - 5288859
Alignment:
Q  229 attattacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatc 328  Q
    ||||||||||||||| ||||||||  ||||||  ||||| ||||| | |||||| ||||||| ||| || |||||||||||||||||||||| ||||| |    
T  5288653 attattacctggggatacatatccctgaggaagtagaataagcaaaagagctgcagtgatgacagtcaagttttgaagtgcttcaatccttaaaaccacc 5288752  T
Q  329 cattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctctta 428  Q
    ||||||||  || |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||||||||| |||||    
T  5288753 cattccatggccccatttgaatgaaagaacaatgaagcatctgtgtccacaagtttcaagtagtttttgaaaaatctgtctaccatgttgaatgatctta 5288852  T
Q  429 cagtaac 435  Q
    | |||||    
T  5288853 ctgtaac 5288859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 232 - 439
Target Start/End: Complemental strand, 15127472 - 15127265
Alignment:
Q  232 attacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaattttgaagtgcttcaatccttataaccatccat 331  Q
    |||||||||||| | |||||   ||||||  ||||| || | ||||||||| ||||||| ||| |||||| |||||||||||||||||| ||| | ||||    
T  15127472 attacctggggatagatatctttgaggaagtagaatgagtagcaaagctgcagtgatgacagtcaaatttagaagtgcttcaatccttaaaactaaccat 15127373  T
Q  332 tccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctcttacag 431  Q
    |||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||| |    
T  15127372 tccattgccacattggaatgaaagaacaatgaagcatctgtatccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcgtacgg 15127273  T
Q  432 taaccact 439  Q
    ||||||||    
T  15127272 taaccact 15127265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 5309183 - 5309054
Alignment:
Q  21 atgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttgggctgatgtcaaaattaaag 120  Q
    ||||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||  | ||||    
T  5309183 atgtgaatgaattggttgattctttcgacagagataatatagtttgataagttggaaaaccatcgagtccaaaatatttgggctcctgtcaaggtaaaag 5309084  T
Q  121 cataataaagagacagtcccacaagtcctg 150  Q
    ||||| ||||||||||||||||||| ||||    
T  5309083 cataagaaagagacagtcccacaaggcctg 5309054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 14947262 - 14947433
Alignment:
Q  2 ggcaggaggctcaaatggaatgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttgg 101  Q
    |||||||||||||  ||| |||| |||||| || ||||||||||||||||||||||| | ||| ||||| || |||||||||| ||||||||||||||||    
T  14947262 ggcaggaggctcagctggtatgttaatgaattgtttgattctttcaacagagataatatggtttgataaatttgaaaaccatctagtccaaaatatttgg 14947361  T
Q  102 gctgatgtcaaaattaaagcataataaagagacagtcccacaagtcctggagacaaagaacaggagaattgcc 174  Q
    |||  ||||||  | ||||||||| ||||||||||||| ||||| |||| | ||| ||||||||||| |||||    
T  14947362 gctcctgtcaaggtaaaagcataagaaagagacagtccaacaaggcctgca-acacagaacaggagagttgcc 14947433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 5288049 - 5288178
Alignment:
Q  21 atgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttgggctgatgtcaaaattaaag 120  Q
    ||||||||||| || |||||||||||||| |||||||| | ||| ||||||||||||||||||| | |||||||||||||||||  ||||||| | ||||    
T  5288049 atgtgaatgaattggttgattctttcaacggagataatatggtttgataagttggaaaaccatctactccaaaatatttgggctcctgtcaaagtaaaag 5288148  T
Q  121 cataataaagagacagtcccacaagtcctg 150  Q
    ||||| |||||||||| |||||||| ||||    
T  5288149 cataagaaagagacagccccacaaggcctg 5288178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 5280302 - 5280451
Alignment:
Q  1 tggcaggaggctcaaatggaatgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttg 100  Q
    |||| |||||||||  ||| ||||||||||| || |||||||||||||| |||||||| ||||| || ||||||  |||||||||||||||||||| |||    
T  5280302 tggcgggaggctcagctggtatgtgaatgaattgcttgattctttcaacggagataatatagtttgacaagttgttaaaccatcgagtccaaaatacttg 5280401  T
Q  101 ggctgatgtcaaaattaaagcataataaagagacagtcccacaagtcctg 150  Q
    ||||  ||||||    ||||||||| ||||||||||||||||||| ||||    
T  5280402 ggctcctgtcaaggaaaaagcataagaaagagacagtcccacaaggcctg 5280451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15127775 - 15127672
Alignment:
Q  1 tggcaggaggctcaaatggaatgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttg 100  Q
    ||||||||||||||  ||| ||||||||||| || |||||||||||||||||||| || || || ||||||||||||||||||| |||||||||||||||    
T  15127775 tggcaggaggctcagctggtatgtgaatgaattgcttgattctttcaacagagatgatataatttgataagttggaaaaccatctagtccaaaatatttg 15127676  T
Q  101 ggct 104  Q
    ||||    
T  15127675 ggct 15127672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 31524520 - 31524957
Alignment:
Q  17 tggaatgtgaatgaactgattgattctttcaacagagataatgtagttcgataagttggaaaaccatcgagtccaaaatatttgggctgatgtcaaaatt 116  Q
    ||||||||  |||||||| |||||||||||||| ||||| |||| ||| |||||| |||||||||||| |||||||||||| ||||||  ||||||| |     
T  31524520 tggaatgtcgatgaactgcttgattctttcaaccgagattatgttgtttgataaggtggaaaaccatctagtccaaaatatctgggctcctgtcaaatta 31524619  T
Q  117 aaagcataataaagagacagtcccacaagtcctggagacaaagaacaggagaattgccgagaatt----gtcagtattagc---aaaatcatgtcatcg- 208  Q
    ||||||||  |||||||||||||||||||||||| | ||| | ||||| |||||| || ||| ||    |||||||||| |   |||||||||||||||     
T  31524620 aaagcatacgaaagagacagtcccacaagtcctgcacacacacaacagaagaatttccaagagttagcagtcagtattatcgtcaaaatcatgtcatcgt 31524719  T
Q  209 --cagatgatctctt-atgcaacattat---tacctggggacacatatccacgaggaacaagaattagcaacaaagctgcggtgatgagagttaaatttt 302  Q
      ||   || || || |||||| | |||   ||||||| |||||||||||| ||||||  ||||| |||||||| ||||| ||||| |  || ||| |||    
T  31524720 cgcaatcgacctttttatgcaatactataagtacctggagacacatatccatgaggaagtagaataagcaacaatgctgcagtgataactgtcaaagttt 31524819  T
Q  303 gaagtgcttcaatccttataaccatccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaa-gtagtttttgtaaa 401  Q
    ||||||| |||||||||||||||||||| |||||  | |||||||||||||||||||  | ||||||| |||| ||||||||||| ||||| |||   ||    
T  31524820 gaagtgcctcaatccttataaccatccactccatggcaacattagaatgaaagaacagcgtagcatctgtgtcgacaagttttaaagtagtatttcataa 31524919  T
Q  402 atccatctaccatgttgaatgctcttacagtaaccact 439  Q
     ||  |||||||||||||||||||||| ||||||||||    
T  31524920 gtctgtctaccatgttgaatgctcttatagtaaccact 31524957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 114019 - 113952
Alignment:
Q  328 ccattccattcccacattagaatgaaagaacaatgaagcatctttgtccacaagttttaagtagtttt 395  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  114019 ccattccattgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttt 113952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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