View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4375_low_4 (Length: 458)

Name: NF4375_low_4
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4375_low_4
NF4375_low_4
[»] chr2 (14 HSPs)
chr2 (115-451)||(35889658-35889994)
chr2 (115-363)||(35554445-35554681)
chr2 (381-451)||(35554501-35554571)
chr2 (213-269)||(34989588-34989644)
chr2 (381-441)||(35890053-35890113)
chr2 (220-286)||(34989537-34989601)
chr2 (223-286)||(35890051-35890114)
chr2 (145-218)||(35890238-35890314)
chr2 (385-441)||(35554382-35554438)
chr2 (223-306)||(35554361-35554444)
chr2 (225-361)||(35889924-35890048)
chr2 (194-232)||(16231403-16231441)
chr2 (19-49)||(35889564-35889594)
chr2 (414-443)||(34989503-34989532)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 115 - 451
Target Start/End: Original strand, 35889658 - 35889994
Alignment:
Q  115 ttacattccatagttactttcttgattttgattcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889658 ttacattccatagttactttcttgattttgattcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgac 35889757  T
Q  215 tgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889758 tgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatg 35889857  T
Q  315 aatccggaaggcgtaaaaatggaggaggatcatcagaaagaaagtggtggtgatgtagcattgggtgatgatgtaacagtgaatgagggaggcattggca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35889858 aatccggaaggcgtaaaaatggaggaggatcatcagaaagaaagtggtggtgatgtagcattgggtgatgatgtaacagtgaatgagggaggcattggca 35889957  T
Q  415 gtgattcttcaactactgatcagaaaggtgatgatgt 451  Q
    |||||||||||||||||||||||||||||||||||||    
T  35889958 gtgattcttcaactactgatcagaaaggtgatgatgt 35889994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 115 - 363
Target Start/End: Complemental strand, 35554681 - 35554445
Alignment:
Q  115 ttacattccatagttactttcttgattttgattcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| | | ||||||||||||| |||||||||||    
T  35554681 ttacattccatagttactttcttgattttgattcttcttgtgaccaaaaaatggagaagaatcttgagaatgaggcacaaaagatgattggttctacgac 35554582  T
Q  215 tgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatg 314  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||            |||||||||| |||||||    
T  35554581 tgatcagaaagatgatgcagcaatgaatgagggaggcactggtagtgattcttcaactactgatcagaaa------------ggtgatgatgtagcaatg 35554494  T
Q  315 aatccggaaggcgtaaaaatggaggaggatcatcagaaagaaagtggtg 363  Q
    |||| || | ||  |||||||||||||||||||||||||||||||||||    
T  35554493 aatcagggaagctcaaaaatggaggaggatcatcagaaagaaagtggtg 35554445  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 35554571 - 35554501
Alignment:
Q  381 gatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaaggtgatgatgt 451  Q
    ||||||| | || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  35554571 gatgatgcagcaatgaatgagggaggcactggtagtgattcttcaactactgatcagaaaggtgatgatgt 35554501  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 34989588 - 34989644
Alignment:
Q  213 actgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttca 269  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  34989588 actgatcagaaagatgatgcatcaatgaatgaggcaggcactggtagtgattcttca 34989644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 381 - 441
Target Start/End: Original strand, 35890053 - 35890113
Alignment:
Q  381 gatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaag 441  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||| || |||||||||    
T  35890053 gatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaaag 35890113  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 34989537 - 34989601
Alignment:
Q  220 agaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaaga 286  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||||||  ||||||| ||||||    
T  34989537 agaaagatgatgcatcaatgaatgagggaggcac--gtagtgattcttcaagcactgatcagaaaga 34989601  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 35890051 - 35890114
Alignment:
Q  223 aagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaaga 286  Q
    ||||||||| |||| |||| |||||||||||||| ||||||||||||||| || ||| ||||||    
T  35890051 aagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaaaga 35890114  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 35890238 - 35890314
Alignment:
Q  145 attcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacac---aaaagatgatcggttctacgactgat 218  Q
    |||||||||||||||||| |||||||||| |||||||||||| | |||   ||||||||||| |||| || ||||||    
T  35890238 attcttcttgtgaccaaaaaatggagaagcatcttaagaacgaggcaccgaaaaagatgatcagttccactactgat 35890314  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 35554438 - 35554382
Alignment:
Q  385 atgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaag 441  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| || |||||||||    
T  35554438 atgtagcattgaatgagggaggcactggcagtaattcttcaacttctcatcagaaag 35554382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 35554444 - 35554361
Alignment:
Q  223 aagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatg 306  Q
    ||||| ||| |||| |||| |||||||||||||| ||| ||||||||||| || ||| ||||||  ||||| |||| |||||||    
T  35554444 aagattatgtagcattgaatgagggaggcactggcagtaattcttcaacttctcatcagaaagatgttagtagtggcgatgatg 35554361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 361
Target Start/End: Original strand, 35889924 - 35890048
Alignment:
Q  225 gatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatgaatccggaag 324  Q
    ||||||| | || |||| |||||||||| ||| |||||||||||||||||||||| |||||            ||||||||| | ||| ||||| || |     
T  35889924 gatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaag------------gtgatgatgtaacaacgaatcagggaa 35890011  T
Q  325 gcgtaaaaatggaggaggatcatcagaaagaaagtgg 361  Q
    | | ||||||||||||| |||||||||||||||||||    
T  35890012 gtgcaaaaatggaggagaatcatcagaaagaaagtgg 35890048  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 16231441 - 16231403
Alignment:
Q  194 aaagatgatcggttctacgactgatcagaaagatgatgc 232  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  16231441 aaagatgaccggttccacgactgatcagaaagatgatgc 16231403  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 35889564 - 35889594
Alignment:
Q  19 tcactgtgtacatacaaatcaaatccatcaa 49  Q
    |||||||||||||||||||||||||||||||    
T  35889564 tcactgtgtacatacaaatcaaatccatcaa 35889594  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 443
Target Start/End: Original strand, 34989503 - 34989532
Alignment:
Q  414 agtgattcttcaactactgatcagaaaggt 443  Q
    ||||||||||||||||||||||||||||||    
T  34989503 agtgattcttcaactactgatcagaaaggt 34989532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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