View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4375_low_5 (Length: 424)
Name: NF4375_low_5
Description: NF4375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4375_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 6782001 - 6782249
Alignment:
| Q |
12 |
catcatcatccagttcagctgccacacgttgattcaatgtctccaagttcgtgtatgcttcctgcgaaatatgtagaaaatcaattgagcttaattaaca |
111 |
Q |
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| T |
6782001 |
catcatcatccagttcagctgccacacgttgattcaatgtctccaagttcatgtatgcttcctgcgaaatatgtagaaaaccaattgagcttaattaaca |
6782100 |
T |
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| Q |
112 |
gcatacgccaaatatatagcataaaattgatcctcttattgcctgaaatgctattaacaaacctttgaatcagcagacacaaatagactccattccagaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6782101 |
gcatacgccaaatatatagcataaaattgatcctcttattgcctgaaatgctattaacaaacctttgaatcagcagacacaaatagcctccattccagaa |
6782200 |
T |
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| Q |
212 |
cagttgcaattttctcattattaattgcattaactgcaaactggatcaa |
260 |
Q |
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| T |
6782201 |
cagttgcaattttctcattattaattgcattaactgcaaactggatcaa |
6782249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 168 - 424
Target Start/End: Complemental strand, 6665999 - 6665747
Alignment:
| Q |
168 |
acaaacctttgaatcagcagacacaaatagactccattccagaacagttgcaattttctcattattaattgcattaactgcaaactggatcaattttgaa |
267 |
Q |
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| T |
6665999 |
acaaacctttgaatcagcagacacaaatagcttccattccagaacagttgcaattttctcattattaattggattaactgcaaactggatcaattttgaa |
6665900 |
T |
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| Q |
268 |
ctgaatgaaacaaaattatttgttagtaaagtctcaactaaattggagtgagtatacattggaattaaatgcaaccactgttaatgtgaaactaaaatca |
367 |
Q |
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| T |
6665899 |
ctgaagaaaataaaagtatttgttagtaaagtctcaactaaattg----gagtatacgttcgaattaaatgagacaacttttaatgtgaaactaaaatca |
6665804 |
T |
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| Q |
368 |
cttacatttcatttctcatccaattgcggctgtgtatcacttgaagatgatcacgcc |
424 |
Q |
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| T |
6665803 |
cttacatttcatttctcatccaattgcggctgtatatcactggaagacgatcacgcc |
6665747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 6666142 - 6666037
Alignment:
| Q |
12 |
catcatcatccagttcagctgccacacgttgattcaatgtctccaagttcgtgtatgcttcctgcgaaatatgtagaaaatcaattgagcttaattaaca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
6666142 |
catcatcatccagttcagctgccacacgttgattcaatgtctccacgttcatatatgcttcctgccaaatatgtagaaaaacaattgagcttaattaaca |
6666043 |
T |
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| Q |
112 |
gcatac |
117 |
Q |
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||||| |
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| T |
6666042 |
acatac |
6666037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 46518875 - 46518793
Alignment:
| Q |
34 |
cacacgttgattcaatgtctccaagttcgtgtatgcttcctgcgaaatatgtagaaaatcaattgagcttaattaacagcata |
116 |
Q |
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| T |
46518875 |
cacacgctgattcaatgtctccaggttcatatattcctcctgccaaatttgtagaaaaacaattgtgcttaattaacaacata |
46518793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 36850254 - 36850320
Alignment:
| Q |
50 |
gtctccaagttcgtgtatgcttcctgcgaaatatgtagaaaatcaattgagcttaattaacagcata |
116 |
Q |
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||||||| |||| | ||| | |||||| |||||||||||||| |||||| |||||||||||| |||| |
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| T |
36850254 |
gtctccaggttcatatattcctcctgccaaatatgtagaaaaacaattgtgcttaattaacatcata |
36850320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 36861952 - 36861997
Alignment:
| Q |
71 |
tcctgcgaaatatgtagaaaatcaattgagcttaattaacagcata |
116 |
Q |
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|||||| |||||||||||||| |||||| |||||||||||| |||| |
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| T |
36861952 |
tcctgccaaatatgtagaaaaacaattgtgcttaattaacatcata |
36861997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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