View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4376-Insertion-2 (Length: 1047)
Name: NF4376-Insertion-2
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 366 - 952
Target Start/End: Original strand, 12567497 - 12568084
Alignment:
| Q |
366 |
acaaacctctacataaattttaaaatattttatcatatttggttcctaggacactttcatattatttgttaattaccatatcaagtaaacaatgatacct |
465 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12567497 |
acaaacctctatataaattttaaaatattttatcatatttggttcctaggacactttcatattgtttgttaattaccatatcaagtaaactatgatacct |
12567596 |
T |
|
| Q |
466 |
ttttatgtcttataaacaagatgcaatggttctaatccatattacatatatggacaaaaagcacaaattacaactgtccctactattcactaccagcaag |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12567597 |
ttttatgtcttataaacaagatgcaatggttctaatccatattacatatatggacaaaaagcacaaattacaactgtccctactattcactaccagcaag |
12567696 |
T |
|
| Q |
566 |
acaagggcatagcaatagtaacaatgagttggtatatgtcgcaaattgctgcatgtgattcagaaagtagcaaccaattatgggccccacattgatatga |
665 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||| ||||| |||||||||||||||| |
|
|
| T |
12567697 |
acaagggcagagcaatagtaacaatgagttggtatatgtcccaaattgctgcatgtgatcaagaaagtatcaaacaaatatggaccccacattgatatga |
12567796 |
T |
|
| Q |
666 |
gtcaactcacatatcgtctactaaacgacatccttctaattaattgaaaagacccctcaaatcgcaagattcacaaattcctcaatttcactcatagtaa |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12567797 |
gtcaactcacatatcgtctactaaacgacatccttctaattaattgaaaagacccctcaaatcacaagattcacaaattcctcaatttcactcatagtaa |
12567896 |
T |
|
| Q |
766 |
gacataaaatatatataacccatgattaagttaatcattaagaaccatccatgcttctacacttttttgtctcattccctctccataactattatcatta |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12567897 |
gacataaaatatatataacccatgattaagttaatcattaagaaccatccatgcttctacacttttttgtctcattccctctccataactattatcatta |
12567996 |
T |
|
| Q |
866 |
taatattctacatccaccacaagttgaatattagtcccacactattc-tattggaccatcccaatggcaagcataaagtgacggatct |
952 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||| ||||||| |
|
|
| T |
12567997 |
taatattctacatccaccacaagttgaatattagtcccacactattcatattggaccatcttaatggcaagcgtacagtggcggatct |
12568084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 12567060 - 12567332
Alignment:
| Q |
13 |
ttcatccatgaaattattaatttcctcaacttgattgataatttgagcccaaagagtggggtcatgtcagagtgtcgagaaaatacaagtgacttacggt |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12567060 |
ttcatccatgaaattataaatttcctcaacttgattgagaatttgagcccaaagagtggggtcatgtcagagtgtcgagaaaatacaa------------ |
12567147 |
T |
|
| Q |
113 |
ctcttcacaacatattaagagcaacatgaaacaataactaccatggacaaatcatattgacagtgttgttagtt----gattccattcaaaccgagccaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
12567148 |
ctcttcacaacatattaagagcaacatcaaacaataactaccatggaaaaatcatattatgagtgttgttagttaagagattccattcaaacaaagccaa |
12567247 |
T |
|
| Q |
209 |
agttcccaagctatagaatttactccaaatatcatctttaataatacttatcccaaaaa-atttcacatcatcacaatctctaag |
292 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
12567248 |
agtttccaagctatagaatttactccaaatatcatctttaataatacttatcccaaaaagatttcacatcatggcaatctctaag |
12567332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 975 - 1006
Target Start/End: Complemental strand, 30773633 - 30773602
Alignment:
| Q |
975 |
caaatatttttagaatatatataaatctgttt |
1006 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30773633 |
caaatatttttagaatatatataaatctgttt |
30773602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 975 - 1025
Target Start/End: Original strand, 12568106 - 12568159
Alignment:
| Q |
975 |
caaatatttttagaatatatataaatctg-tttaagatat--acgaaattatga |
1025 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
12568106 |
caaatatttttagaatatatataaatccgttttaagatattaacgaaattatga |
12568159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University