View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376-Insertion-2 (Length: 1047)

Name: NF4376-Insertion-2
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376-Insertion-2
NF4376-Insertion-2
[»] chr8 (4 HSPs)
chr8 (366-952)||(12567497-12568084)
chr8 (13-292)||(12567060-12567332)
chr8 (975-1006)||(30773602-30773633)
chr8 (975-1025)||(12568106-12568159)


Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 366 - 952
Target Start/End: Original strand, 12567497 - 12568084
Alignment:
366 acaaacctctacataaattttaaaatattttatcatatttggttcctaggacactttcatattatttgttaattaccatatcaagtaaacaatgatacct 465  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
12567497 acaaacctctatataaattttaaaatattttatcatatttggttcctaggacactttcatattgtttgttaattaccatatcaagtaaactatgatacct 12567596  T
466 ttttatgtcttataaacaagatgcaatggttctaatccatattacatatatggacaaaaagcacaaattacaactgtccctactattcactaccagcaag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12567597 ttttatgtcttataaacaagatgcaatggttctaatccatattacatatatggacaaaaagcacaaattacaactgtccctactattcactaccagcaag 12567696  T
566 acaagggcatagcaatagtaacaatgagttggtatatgtcgcaaattgctgcatgtgattcagaaagtagcaaccaattatgggccccacattgatatga 665  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| ||| ||| ||||| ||||||||||||||||    
12567697 acaagggcagagcaatagtaacaatgagttggtatatgtcccaaattgctgcatgtgatcaagaaagtatcaaacaaatatggaccccacattgatatga 12567796  T
666 gtcaactcacatatcgtctactaaacgacatccttctaattaattgaaaagacccctcaaatcgcaagattcacaaattcctcaatttcactcatagtaa 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
12567797 gtcaactcacatatcgtctactaaacgacatccttctaattaattgaaaagacccctcaaatcacaagattcacaaattcctcaatttcactcatagtaa 12567896  T
766 gacataaaatatatataacccatgattaagttaatcattaagaaccatccatgcttctacacttttttgtctcattccctctccataactattatcatta 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12567897 gacataaaatatatataacccatgattaagttaatcattaagaaccatccatgcttctacacttttttgtctcattccctctccataactattatcatta 12567996  T
866 taatattctacatccaccacaagttgaatattagtcccacactattc-tattggaccatcccaatggcaagcataaagtgacggatct 952  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| || |||| |||||||    
12567997 taatattctacatccaccacaagttgaatattagtcccacactattcatattggaccatcttaatggcaagcgtacagtggcggatct 12568084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 12567060 - 12567332
Alignment:
13 ttcatccatgaaattattaatttcctcaacttgattgataatttgagcccaaagagtggggtcatgtcagagtgtcgagaaaatacaagtgacttacggt 112  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                
12567060 ttcatccatgaaattataaatttcctcaacttgattgagaatttgagcccaaagagtggggtcatgtcagagtgtcgagaaaatacaa------------ 12567147  T
113 ctcttcacaacatattaagagcaacatgaaacaataactaccatggacaaatcatattgacagtgttgttagtt----gattccattcaaaccgagccaa 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||   |||||||||||||    ||||||||||||||  ||||||    
12567148 ctcttcacaacatattaagagcaacatcaaacaataactaccatggaaaaatcatattatgagtgttgttagttaagagattccattcaaacaaagccaa 12567247  T
209 agttcccaagctatagaatttactccaaatatcatctttaataatacttatcccaaaaa-atttcacatcatcacaatctctaag 292  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||    
12567248 agtttccaagctatagaatttactccaaatatcatctttaataatacttatcccaaaaagatttcacatcatggcaatctctaag 12567332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 975 - 1006
Target Start/End: Complemental strand, 30773633 - 30773602
Alignment:
975 caaatatttttagaatatatataaatctgttt 1006  Q
    ||||||||||||||||||||||||||||||||    
30773633 caaatatttttagaatatatataaatctgttt 30773602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 975 - 1025
Target Start/End: Original strand, 12568106 - 12568159
Alignment:
975 caaatatttttagaatatatataaatctg-tttaagatat--acgaaattatga 1025  Q
    ||||||||||||||||||||||||||| | ||||||||||  ||||||||||||    
12568106 caaatatttttagaatatatataaatccgttttaagatattaacgaaattatga 12568159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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