View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376-Insertion-3 (Length: 874)

Name: NF4376-Insertion-3
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376-Insertion-3
NF4376-Insertion-3
[»] chr4 (8 HSPs)
chr4 (7-874)||(46873385-46874253)
chr4 (603-874)||(46891771-46892054)
chr4 (251-325)||(46891043-46891117)
chr4 (528-594)||(46891392-46891458)
chr4 (368-507)||(46891255-46891396)
chr4 (529-594)||(46900046-46900111)
chr4 (408-467)||(18968310-18968369)
chr4 (438-467)||(35522102-35522131)
[»] chr1 (5 HSPs)
chr1 (247-352)||(48232114-48232219)
chr1 (247-352)||(48237154-48237259)
chr1 (129-176)||(48232225-48232273)
chr1 (129-176)||(48237265-48237313)
chr1 (422-467)||(26238437-26238482)


Alignment Details
Target: chr4 (Bit Score: 794; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 7 - 874
Target Start/End: Original strand, 46873385 - 46874253
Alignment:
7 agaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcgttgtctattatgtttcatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46873385 agaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcgttgtctattatgtttcatg 46873484  T
107 tttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgagtgagcaattgttatattgtttatacaaca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
46873485 tttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattgttatattgtttatacaaca 46873584  T
207 aatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46873585 aatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggca 46873684  T
307 tggcggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgct 406  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46873685 tggtggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcggttcgcggaaaaatatgct 46873784  T
407 agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46873785 agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattagcgagttgttcaaatcccgc 46873884  T
507 tctgcaatagctccaatgcagccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtccgagtcatcaat 606  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
46873885 tctgcaatagctccaatgcagccgctatttaacaacacttgcacaacacttgaatgaaattatgaattttcccgtcaaccccattatccgagtcatcaat 46873984  T
607 cattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcatttgtga 706  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46873985 aattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcatttgtga 46874084  T
707 tgatg-agacataagacatctgtacgtcacagccacagttgtgatcctagaccttatatttagaaaaatcttgctcgcttgtgtgcgagtgtatgataaa 805  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||    
46874085 tgatgaagacataagacatctgtacgtctcagccacagttgtggtcctagaccttatatttaaaaaaatcttgttcgcttgtgtgcgagtgtatgat-aa 46874183  T
806 cttatatttgcatattgtgagcgaaataacaagatggatataacaattgcaac-ttttggtttccatgta 874  Q
    |||||||||||||||||||||| |||| ||||||||  ||||||||||||||| ||||||||||||||||    
46874184 cttatatttgcatattgtgagcaaaattacaagatgattataacaattgcaactttttggtttccatgta 46874253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 603 - 874
Target Start/End: Original strand, 46891771 - 46892054
Alignment:
603 caatcattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcattt 702  Q
    |||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
46891771 caataattttgaggtacattgttcatttgcaaagttttaaattgtgaccatgccgcgatccttaatattggggtcaaatatggttaatgcagctgcattt 46891870  T
703 gtg-----atg-atgagacataaga----catctgtacgtcacagccacagttgtgatcctagaccttatatttagaaaaatcttgctcgcttgtgtg-c 791  Q
    |||     ||| |||| |  | | |    |||||||||||| ||||||||||  || ||  |||||||||||||| |||||||||| |||||||||||      
46891871 gtgtgtgaatgtatgataacttatatttgcatctgtacgtctcagccacagtcatggtcgcagaccttatatttaaaaaaatcttgttcgcttgtgtgta 46891970  T
792 gagtgtatgataaacttatatttgcatattgtgagc-gaaataacaagatggatataacaattgcaact-tttggtttccatgta 874  Q
     | | |||||| ||||||||||||||||||||||||  |||  ||||||||  |||||||| || |||| |||||||||||||||    
46891971 aaatatatgat-aacttatatttgcatattgtgagcaaaaagtacaagatgattataacaaatgaaactgtttggtttccatgta 46892054  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 46891043 - 46891117
Alignment:
251 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagt 325  Q
    |||||||||||||||||||||||||||||||||||| |||||| |  || |||||||||||||||||||||||||    
46891043 ttaatgatcacattatctccttgttatcaaatttctgccataaatgggctgtggcatggcggactttgtgctagt 46891117  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 594
Target Start/End: Original strand, 46891392 - 46891458
Alignment:
528 ccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc 594  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||| |||||||    
46891392 ccgctatttaacaacacttacataatacttgaatgaaattctgaatttttccgtcaaccacattgtc 46891458  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
368 acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa 466  Q
    ||||||||||||||||||| ||| |||||| ||| || | ||||| || |  | |||| ||||||||| |||||||||||||||||||||||| ||||||    
46891255 acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa 46891354  T
467 tgacttttcg-cggggcattagcgagttgttcaaatcccgct 507  Q
    | |  ||| |  |||||| ||| || ||||||||||||||||    
46891355 taaagtttggtgggggcaatagtgatttgttcaaatcccgct 46891396  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 594
Target Start/End: Original strand, 46900046 - 46900111
Alignment:
529 cgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc 594  Q
    |||||||| ||| ||||| ||||| |||||||||||||| ||  ||||||| ||||||||||||||    
46900046 cgctatttgacatcacttacataatacttgaatgaaattctgctttttcccatcaaccccattgtc 46900111  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
408 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat 467  Q
    ||||||||| |||| |||||||||| | |||||||||||| |||| |||||| |||||||    
18968369 gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 467
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
438 gccgctatttcacaatattttgcactaaat 467  Q
    ||||||||||||||||||||||||||||||    
35522131 gccgctatttcacaatattttgcactaaat 35522102  T

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Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 48232219 - 48232114
Alignment:
247 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 346  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
48232219 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48232120  T
347 ttatac 352  Q
    ||||||    
48232119 ttatac 48232114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 48237259 - 48237154
Alignment:
247 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 346  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
48237259 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48237160  T
347 ttatac 352  Q
    ||||||    
48237159 ttatac 48237154  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 48232273 - 48232225
Alignment:
129 tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctga 176  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
48232273 tgaatggaaaatgatttccatccttgtttataggcagagcaggttctga 48232225  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 48237313 - 48237265
Alignment:
129 tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctga 176  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
48237313 tgaatggaaaatgatttccatccttgtttataggcagagcaggttctga 48237265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
422 ctgcaatagtgctttagccgctatttcacaatattttgcactaaat 467  Q
    ||||||||||||| ||||||||||||  |||||||||| |||||||    
26238437 ctgcaatagtgctatagccgctatttggcaatattttgtactaaat 26238482  T

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