View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4376-Insertion-4 (Length: 820)
Name: NF4376-Insertion-4
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 748; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 7 - 818
Target Start/End: Original strand, 47927860 - 47928671
Alignment:
| Q |
7 |
aatatgatgaaatgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacattatatattatatagttaa |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47927860 |
aatatgatgaattgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacattatatattatatagttaa |
47927959 |
T |
|
| Q |
107 |
tcaatatctgatttcgagcacatgaaggagggtttcttccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgta |
206 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47927960 |
tcaatatctgatttcaagcacataaaggagggtttcttccagctcctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgta |
47928059 |
T |
|
| Q |
207 |
acaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggcccca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47928060 |
acaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggcccca |
47928159 |
T |
|
| Q |
307 |
aatcgaccacttgctgcctctccactacccatttgtgttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatca |
406 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47928160 |
aatcgaccacttgctgcatctccactacccatctgtgttcctgtgtgaggaggttttgttttgacctcataactaaacacttgtccaccccattgaatca |
47928259 |
T |
|
| Q |
407 |
atgctgcactgtgtcttaaattacctaataactctgctggccaataacctacagggatgttattcttcactttaagccaccagttttgggcattatccta |
506 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47928260 |
atgttgcactgtgtcttaaattacctaataactctgctggccaataacctacagggatgttattcttcactttaaaccaccagttttgggcattatccta |
47928359 |
T |
|
| Q |
507 |
aatcaagccaacatattaagagaaattaaaataacaattattttgtactacaattagcgcttctactttgtaattattacctggaatattccaacattga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47928360 |
aatcaagccaacatattaagagaaattaaaataacaatcattttgtactacaattagcgcttctactttgtaattattacctgaaatattccaacattga |
47928459 |
T |
|
| Q |
607 |
tttcatattgttgttgatgaggggatgaaacaggtcctagggtagcaccaagggctatacccttgtttgtttgcacaataccatgacatgtaagatcaaa |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47928460 |
tttcatattgttgttgatgaggggatgaaacaggtcctagggtagcaccaagggctatacccttgtttgtttgcacaaaaccatgacatgtaagatcaaa |
47928559 |
T |
|
| Q |
707 |
gcagcctgttgacttgtatgtatctttctgcatgcaccacaatcaagaaaccaaaaatcaatgtttatttctcttagggtttgtggttataatgtaacta |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47928560 |
gcagcctgttgacttgtatgtatctttctgcatgcaccacaatcaagaaaccaaaaatcaatgtttatttctcttagggtttgtggttataaaataacta |
47928659 |
T |
|
| Q |
807 |
taagatttgaaa |
818 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47928660 |
taagatttgaaa |
47928671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 154 - 492
Target Start/End: Original strand, 47935441 - 47935779
Alignment:
| Q |
154 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
253 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||| || | |
|
|
| T |
47935441 |
ccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttga |
47935540 |
T |
|
| Q |
254 |
gagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatttgtgttcctgtgtg |
353 |
Q |
| |
|
|||||| ||||||||| |||||||| ||| | | |||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
47935541 |
gagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcctgtgtg |
47935640 |
T |
|
| Q |
354 |
aggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgctgcactgtgtcttaaattacctaataactctgctggccaataa |
453 |
Q |
| |
|
|||||| | ||||| ||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
47935641 |
aggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgcactgtgtcttaaattacccaataattccgctggccaataa |
47935740 |
T |
|
| Q |
454 |
cctacagggatgttattcttcactttaagccaccagttt |
492 |
Q |
| |
|
||||| |||| ||| ||||||| |||||||||||||| |
|
|
| T |
47935741 |
cctaccatgatggtatccttcactctaagccaccagttt |
47935779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 144 - 509
Target Start/End: Original strand, 47918235 - 47918597
Alignment:
| Q |
144 |
tccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgat |
243 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47918235 |
tccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgat |
47918334 |
T |
|
| Q |
244 |
ggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatttgtg |
343 |
Q |
| |
|
|| |||||||| ||||| |||| |||||| |||||||||| ||||||||||||||| |||||||| | | |||| | ||||||||||||||||||| |
|
|
| T |
47918335 |
gggtacttaagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaatttattatatgcttcttctccactacccatttgtg |
47918434 |
T |
|
| Q |
344 |
ttcctgtgtgaggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgctgcactgtgtcttaaattacctaataactctgc |
443 |
Q |
| |
|
|||| |||||||||| || |||| ||| |||||||||||||||||||||||||||||| ||||| |||| | || |||| | ||||||| |
|
|
| T |
47918435 |
ttccagtgtgaggag---tttttttgacctcataactaaacacttgtccaccccattgaaccaatgatgcagaactttgtaggttactcactaactcttt |
47918531 |
T |
|
| Q |
444 |
tggccaataacctacagggatgttattcttcactttaagccaccagttttgggcattatcctaaat |
509 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
47918532 |
tggccaataacctacaggaatgttattcttcactttaagccaccagtttccagaattatcctaaat |
47918597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 154 - 547
Target Start/End: Original strand, 47909079 - 47909472
Alignment:
| Q |
154 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
253 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||||| ||| |||||||||||||| | || ||| |||||||||| |||| ||| ||| ||||||| |
|
|
| T |
47909079 |
ccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggctctccagcatgtgtggttacgaattgtgggtacttaa |
47909178 |
T |
|
| Q |
254 |
gagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatttgtgttcctgtgtg |
353 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || |||||| | | || | | |||| | |||||||| |||||||||||||||||||| |
|
|
| T |
47909179 |
gagcttgtgagtaatctttaattctcactgcgcccatatagcatgcgtgcttatatttattatatgcttcttctccactccccatttgtgttcctgtgtg |
47909278 |
T |
|
| Q |
354 |
aggaggttttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgctgcactgtgtcttaaattacctaataactctgctggccaataa |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||| | |||||||| |||||||| |||||||||||| |
|
|
| T |
47909279 |
aggaggttttgttttaaccgcataactaaatacttgtccaccccattgaaccgtcgttgcactgtgtttcaaattaccaaataactcagctggccaataa |
47909378 |
T |
|
| Q |
454 |
cctacagggatgttattcttcactttaagccaccagttttgggcattatcctaaatcaagccaacatattaagagaaattaaaataacaattat |
547 |
Q |
| |
|
||||| || || |||||||| | ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
47909379 |
cctactggtatattattcttaattttaagccaccagttttggttattatcctaaatcaaacaaacatattaagagaaattaaaattacaattat |
47909472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 161 - 491
Target Start/End: Original strand, 47946590 - 47946920
Alignment:
| Q |
161 |
agaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttg |
260 |
Q |
| |
|
|||| |||||||||||||||||| || |||| ||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||||| |||| || |
|
|
| T |
47946590 |
agaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttc |
47946689 |
T |
|
| Q |
261 |
tgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatttgtgttcctgtgtgaggaggt |
360 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47946690 |
tgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcctgtgtgaggaggg |
47946789 |
T |
|
| Q |
361 |
tttgttttaaccgcataactaaacacttgtccaccccattgaatcaatgctgcactgtgtcttaaattacctaataactctgctggccaataacctacag |
460 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| ||||| |||||| ||| ||| ||||| | || | |||||||||||||||||||| |
|
|
| T |
47946790 |
gttgttttcacattataactaaacacttgtccaccccattgaaccaatgttgcactatgttgtaagttacccactatcgctgctggccaataacctacaa |
47946889 |
T |
|
| Q |
461 |
ggatgttattcttcactttaagccaccagtt |
491 |
Q |
| |
|
||| |||| ||||| | ||||||||||||| |
|
|
| T |
47946890 |
tgattttatccttcattctaagccaccagtt |
47946920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 582 - 779
Target Start/End: Original strand, 47919317 - 47919510
Alignment:
| Q |
582 |
attacctggaatattccaacattgatttcatattgttgttgatgaggggatgaaacaggtcctagggtagcaccaagggctatacccttgtttgtttgca |
681 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
47919317 |
attacccgaaatattccaacgttgatttcatattgttggtgagaagggactgaaacaggtcctagggtagcaccaagcgctatatccttgtttgtttgca |
47919416 |
T |
|
| Q |
682 |
caataccatgacatgtaagatcaaagcagcctgttgacttgtatgtatctttctgcatgcaccacaatcaagaaaccaaaaatcaatgtttatttctc |
779 |
Q |
| |
|
||| ||| | || ||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
47919417 |
caaaacccttgcaagtaagatcaaaacatcctgttgacttgtatgtatctttctgcat----cataatcaagaaacaaaaaatcaatgcttatttctc |
47919510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 579 - 818
Target Start/End: Original strand, 47909519 - 47909754
Alignment:
| Q |
579 |
attattacctggaatattccaacattgatttcatattgttgttgatgaggggatgaaacaggtcctagggtagcaccaagggctatacccttgtttgttt |
678 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||| | |||| ||||| |||| ||| | |||||||||| |||| | |||| ||||||| |
|
|
| T |
47909519 |
attattacctgaaatattccaacgtttatttcatattgttgtccaaaagggattgaaataggtgctaagatagcaccaagcgctacatccttatttgttt |
47909618 |
T |
|
| Q |
679 |
gcacaataccatgacatgtaagatcaaagcagcctgttgacttgtatgtatctttctgcatgcaccacaatcaagaaaccaaaaatcaatgtttatttct |
778 |
Q |
| |
|
|||||| ||| | || |||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| || ||||| |
|
|
| T |
47909619 |
gcacaaaacccttgcaagtaagatcaaagcaacctgttgacttgtatgtatctttc----tgcaccacaatcaataaatcaaaaatcaatg-ttgtttct |
47909713 |
T |
|
| Q |
779 |
cttagggtttgtggttataatgtaa-ctataagatttgaaa |
818 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
47909714 |
cttagagtttgtggttataaaaaaatctataagatttgaaa |
47909754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 37432026 - 37431956
Alignment:
| Q |
18 |
atgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacat |
88 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37432026 |
atgaatgattagataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacat |
37431956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 676 - 767
Target Start/End: Original strand, 47941063 - 47941150
Alignment:
| Q |
676 |
tttgcacaataccatgacatgtaagatcaaagcagcctgttgacttgtatgtatctttctgcatgcaccacaatcaagaaaccaaaaatcaa |
767 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||| |||||||||| ||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
47941063 |
tttgcacaaaaccactacaggtaagatcaaagcaacctgttgactggtatgaatctttc----tgcaccgcaatcaagaaaccaaaaatcaa |
47941150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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