View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4376-Insertion-5 (Length: 813)
Name: NF4376-Insertion-5
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376-Insertion-5 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 7 - 813
Target Start/End: Original strand, 45732140 - 45732930
Alignment:
| Q |
7 |
actatgaaagttatatacctggactctatctgcttcttttgcctgatttagtctttcaatattttctggagtaatgaaatggcttgtatctacagtctca |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45732140 |
actatgaaagttatatacctggaccctatctgcttcttttgcctgatttagtctttcaatattttctggagtaatgaaatggcttgtatctacagtctca |
45732239 |
T |
|
| Q |
107 |
accccctgcaaaataaggatatatgatcatgaatgaaaatgagccataaactacaatcattatttagaaatccaccagcaattcaaggtgactagtttct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45732240 |
accccctgcaaaataaggatatatgatcatgaacgaaaatgagccataaactacgatcattatttagaaatccaccagcagttcaaggtgactagtttct |
45732339 |
T |
|
| Q |
207 |
tcatgatgaaatccacatgtatgcttcttctcagaaacctatttctatatgcattctttttgcacttagaggtcgagtttttacgtctctgcgattgcaa |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45732340 |
tcatgatgaaatccacatgtatgctccttctcagaaacctatttctatatgcattctttttgcacttagaggtcgagtttttacgtctctgcgattgcaa |
45732439 |
T |
|
| Q |
307 |
tgcatattgcaatcgcaatcaaggccacatgagccacgtttgattgatcacatctcaacaatatcaatcaagtatcttacgcgacttcaaccactatcgt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45732440 |
tgcatattgcaatcgcaatcaaggccacatgagccacttttgattgatcacatctcaacaatatcaatcaagtatcatacgcgacttcaaccactatcgt |
45732539 |
T |
|
| Q |
407 |
gattgaaaacattggttatacaataacgttgttatgttatattaaagttttgtttggataaataacttaactaaacatgtataacataaacatgcatcaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45732540 |
gattgaaaacattggttatacaataacgttgttatgttatattaaagttttgtttggataaataacttaactaaacatgt---------------atcaa |
45732624 |
T |
|
| Q |
507 |
taagtgtttatgtgtaagtcatttctgcaacaagaaataacataaaagtaaacggtttccatataagatatcctcgagagcttaatggaaataagctgaa |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45732625 |
taagtgtttatgtgtaagtcatttctgcaacaagaaatagcataaaagtaaacagtttccatataagatatcctcgagagctt-atggaaataagctgaa |
45732723 |
T |
|
| Q |
607 |
aacatcatatgaacatgtcgtaaattatccctataagttcccacaaacggtatccaaaatgattacgttagggaataaacttaaataagtgaatccaaac |
706 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45732724 |
aacatcatatgaacatgtcgtaaattatttctataagttcccataaacggtatccaaaatgattatgttagggaataaacttaaataagtgaatccaaac |
45732823 |
T |
|
| Q |
707 |
atgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaatgctaaataaata |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45732824 |
atgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagctaaataaata |
45732923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 45737470 - 45737687
Alignment:
| Q |
7 |
actatgaaagttatatacctggactctatctgcttcttttgcctgatttagtctttcaatattttctggagtaatgaaatggcttgtatctacagtctca |
106 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
45737470 |
actacgaaagttatatacctggaccctatttgcttcttttgcctgatttagcctttcaatattttctggagtaatgaaatggcttgtatgtagagtctca |
45737569 |
T |
|
| Q |
107 |
accccctgcaaaataaggatatatgatcatgaatgaaaatgagccataaactacaatcattatttagaaatccaccagcaattcaaggtgactagtttct |
206 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||| |||| |||||| ||||||||||||||||||| | |
|
|
| T |
45737570 |
accccctgcaaaataaggctacatgatcatgaatgaaaatgagccacaaactatgatcattatttacaaattcaccagtaattcaaggtgactagttttt |
45737669 |
T |
|
| Q |
207 |
tcatgatgaaatccacat |
224 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
45737670 |
tcataatgaaatccacat |
45737687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 394 - 646
Target Start/End: Original strand, 45737916 - 45738167
Alignment:
| Q |
394 |
caaccactatcgtgattgaaaacattggttatacaataacgttgttatgttatattaaagttttgtttggataaataacttaactaaacatgtataacat |
493 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||| | ||||| |||||||||||||||||||||||||||||| | | | |||||||| |
|
|
| T |
45737916 |
caaccattatcgtgattgaaaacattggttatactaaaacatcgttat-----attaaagttttgtttggataaataacttaattgagcgcttataacat |
45738010 |
T |
|
| Q |
494 |
aaacatgcatcaataagtgtttatgtgtaagtcatttctgcaacaagaaataacataaaagt-aaacggtttccatataagatatcctc----gagagct |
588 |
Q |
| |
|
|||| || |||||||| || |||||| ||||||||| || ||||||||||||||| ||||| |||| ||||||||||||| |||||| ||||||| |
|
|
| T |
45738011 |
aaacgtgtatcaataaatgcttatgtataagtcattcctacaacaagaaataacactaaagtcaaactgtttccatataagctatccttccttgagagct |
45738110 |
T |
|
| Q |
589 |
taatggaaataagctgaaaacatcatatgaacatgtcgtaaattatccctataagttc |
646 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| | ||||||||||||| |||||||||| |
|
|
| T |
45738111 |
ta-tggaaataagctgaaaacatcttatgagcttgtcgtaaattatttctataagttc |
45738167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 730 - 811
Target Start/End: Original strand, 45738317 - 45738398
Alignment:
| Q |
730 |
gaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaatgctaaataaatatgagg |
811 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
45738317 |
gaaaatgagttaagaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgagg |
45738398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 8469412 - 8469371
Alignment:
| Q |
591 |
atggaaataagctgaaaacatcatatgaacatgtcgtaaatt |
632 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
8469412 |
atggaaataagctgaaaacaacttatgaacatgtcataaatt |
8469371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 20672763 - 20672819
Alignment:
| Q |
568 |
tataagatatcctcgagagcttaatggaaataagctgaaaacatcatatgaacatgtc |
625 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||||||||| | |||||||||||| |
|
|
| T |
20672763 |
tataagctatcctggagagctta-tgaaaataagctgaaaacagcttatgaacatgtc |
20672819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University