View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376-Insertion-5 (Length: 813)

Name: NF4376-Insertion-5
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376-Insertion-5
NF4376-Insertion-5
[»] chr4 (5 HSPs)
chr4 (7-813)||(45732140-45732930)
chr4 (7-224)||(45737470-45737687)
chr4 (394-646)||(45737916-45738167)
chr4 (730-811)||(45738317-45738398)
chr4 (591-632)||(8469371-8469412)
[»] chr8 (1 HSPs)
chr8 (568-625)||(20672763-20672819)


Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 7 - 813
Target Start/End: Original strand, 45732140 - 45732930
Alignment:
7 actatgaaagttatatacctggactctatctgcttcttttgcctgatttagtctttcaatattttctggagtaatgaaatggcttgtatctacagtctca 106  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45732140 actatgaaagttatatacctggaccctatctgcttcttttgcctgatttagtctttcaatattttctggagtaatgaaatggcttgtatctacagtctca 45732239  T
107 accccctgcaaaataaggatatatgatcatgaatgaaaatgagccataaactacaatcattatttagaaatccaccagcaattcaaggtgactagtttct 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
45732240 accccctgcaaaataaggatatatgatcatgaacgaaaatgagccataaactacgatcattatttagaaatccaccagcagttcaaggtgactagtttct 45732339  T
207 tcatgatgaaatccacatgtatgcttcttctcagaaacctatttctatatgcattctttttgcacttagaggtcgagtttttacgtctctgcgattgcaa 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45732340 tcatgatgaaatccacatgtatgctccttctcagaaacctatttctatatgcattctttttgcacttagaggtcgagtttttacgtctctgcgattgcaa 45732439  T
307 tgcatattgcaatcgcaatcaaggccacatgagccacgtttgattgatcacatctcaacaatatcaatcaagtatcttacgcgacttcaaccactatcgt 406  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
45732440 tgcatattgcaatcgcaatcaaggccacatgagccacttttgattgatcacatctcaacaatatcaatcaagtatcatacgcgacttcaaccactatcgt 45732539  T
407 gattgaaaacattggttatacaataacgttgttatgttatattaaagttttgtttggataaataacttaactaaacatgtataacataaacatgcatcaa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||    
45732540 gattgaaaacattggttatacaataacgttgttatgttatattaaagttttgtttggataaataacttaactaaacatgt---------------atcaa 45732624  T
507 taagtgtttatgtgtaagtcatttctgcaacaagaaataacataaaagtaaacggtttccatataagatatcctcgagagcttaatggaaataagctgaa 606  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
45732625 taagtgtttatgtgtaagtcatttctgcaacaagaaatagcataaaagtaaacagtttccatataagatatcctcgagagctt-atggaaataagctgaa 45732723  T
607 aacatcatatgaacatgtcgtaaattatccctataagttcccacaaacggtatccaaaatgattacgttagggaataaacttaaataagtgaatccaaac 706  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
45732724 aacatcatatgaacatgtcgtaaattatttctataagttcccataaacggtatccaaaatgattatgttagggaataaacttaaataagtgaatccaaac 45732823  T
707 atgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaatgctaaataaata 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
45732824 atgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagctaaataaata 45732923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 45737470 - 45737687
Alignment:
7 actatgaaagttatatacctggactctatctgcttcttttgcctgatttagtctttcaatattttctggagtaatgaaatggcttgtatctacagtctca 106  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||    
45737470 actacgaaagttatatacctggaccctatttgcttcttttgcctgatttagcctttcaatattttctggagtaatgaaatggcttgtatgtagagtctca 45737569  T
107 accccctgcaaaataaggatatatgatcatgaatgaaaatgagccataaactacaatcattatttagaaatccaccagcaattcaaggtgactagtttct 206  Q
    |||||||||||||||||| || |||||||||||||||||||||||| ||||||  ||||||||||| |||| |||||| ||||||||||||||||||| |    
45737570 accccctgcaaaataaggctacatgatcatgaatgaaaatgagccacaaactatgatcattatttacaaattcaccagtaattcaaggtgactagttttt 45737669  T
207 tcatgatgaaatccacat 224  Q
    |||| |||||||||||||    
45737670 tcataatgaaatccacat 45737687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 394 - 646
Target Start/End: Original strand, 45737916 - 45738167
Alignment:
394 caaccactatcgtgattgaaaacattggttatacaataacgttgttatgttatattaaagttttgtttggataaataacttaactaaacatgtataacat 493  Q
    |||||| ||||||||||||||||||||||||||| | ||| | |||||     |||||||||||||||||||||||||||||| | | |   ||||||||    
45737916 caaccattatcgtgattgaaaacattggttatactaaaacatcgttat-----attaaagttttgtttggataaataacttaattgagcgcttataacat 45738010  T
494 aaacatgcatcaataagtgtttatgtgtaagtcatttctgcaacaagaaataacataaaagt-aaacggtttccatataagatatcctc----gagagct 588  Q
    |||| || |||||||| || |||||| ||||||||| || |||||||||||||||  ||||| |||| ||||||||||||| ||||||     |||||||    
45738011 aaacgtgtatcaataaatgcttatgtataagtcattcctacaacaagaaataacactaaagtcaaactgtttccatataagctatccttccttgagagct 45738110  T
589 taatggaaataagctgaaaacatcatatgaacatgtcgtaaattatccctataagttc 646  Q
    || ||||||||||||||||||||| ||||| | |||||||||||||  ||||||||||    
45738111 ta-tggaaataagctgaaaacatcttatgagcttgtcgtaaattatttctataagttc 45738167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 730 - 811
Target Start/End: Original strand, 45738317 - 45738398
Alignment:
730 gaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaatgctaaataaatatgagg 811  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
45738317 gaaaatgagttaagaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgagg 45738398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 8469412 - 8469371
Alignment:
591 atggaaataagctgaaaacatcatatgaacatgtcgtaaatt 632  Q
    |||||||||||||||||||| | |||||||||||| ||||||    
8469412 atggaaataagctgaaaacaacttatgaacatgtcataaatt 8469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 20672763 - 20672819
Alignment:
568 tataagatatcctcgagagcttaatggaaataagctgaaaacatcatatgaacatgtc 625  Q
    |||||| |||||| ||||||||| || |||||||||||||||| | ||||||||||||    
20672763 tataagctatcctggagagctta-tgaaaataagctgaaaacagcttatgaacatgtc 20672819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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