View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4376-Insertion-6 (Length: 674)
Name: NF4376-Insertion-6
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4376-Insertion-6 |
 |  |
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[»] chr6 (35 HSPs) |
 |  |
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[»] chr2 (2 HSPs) |
 |  |
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[»] scaffold0428 (1 HSPs) |
 |  |
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[»] scaffold1749 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 35)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 337 - 674
Target Start/End: Original strand, 33359843 - 33360180
Alignment:
Q |
337 |
ctatatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctgaatcagaagggctctttcatgacaaa |
436 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
T |
33359843 |
ctatatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctgaatcaaaagggctctttcatgacata |
33359942 |
T |
 |
Q |
437 |
gcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtgg |
536 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
33359943 |
gcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtgg |
33360042 |
T |
 |
Q |
537 |
attatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgtt |
636 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
33360043 |
attatcatgtagtctgtaaattttagttacatcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgtt |
33360142 |
T |
 |
Q |
637 |
ttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| |
|
|
T |
33360143 |
ttcccaattcctccaattccacaaattcctatagcacg |
33360180 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 33359511 - 33359760
Alignment:
Q |
8 |
gtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatct |
107 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
33359511 |
gtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatct |
33359610 |
T |
 |
Q |
108 |
taatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatc |
207 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
33359611 |
taatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatc |
33359710 |
T |
 |
Q |
208 |
ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc |
257 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
33359711 |
ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc |
33359760 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 410 - 674
Target Start/End: Original strand, 33059400 - 33059664
Alignment:
Q |
410 |
gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa |
509 |
Q |
|
|
|||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||| | ||||||||||| |||||||||||| |
|
|
T |
33059400 |
gaatcataagggttctttcatgacatagcttcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaa |
33059499 |
T |
 |
Q |
510 |
taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg |
609 |
Q |
|
|
|||||||| |||||| |||||||||||| |||||||| || |||||||| |||||||| ||||| |||||||||||||| ||||| |||||| |
|
|
T |
33059500 |
taggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttgg |
33059599 |
T |
 |
Q |
610 |
ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
T |
33059600 |
ccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacg |
33059664 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 474 - 674
Target Start/End: Complemental strand, 33642781 - 33642581
Alignment:
Q |
474 |
gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca |
573 |
Q |
|
|
|||||||| || ||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||| |||||||| ||||||||||| |
|
|
T |
33642781 |
gcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcgagtggaccatcatgtaatctataaattttgcttacatcatca |
33642682 |
T |
 |
Q |
574 |
atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac |
673 |
Q |
|
|
|| |||||||||||| | ||||| |||||| ||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
T |
33642681 |
ataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattcctatagcac |
33642582 |
T |
 |
Q |
674 |
g |
674 |
Q |
|
|
| |
|
|
T |
33642581 |
g |
33642581 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 410 - 674
Target Start/End: Original strand, 33273629 - 33273893
Alignment:
Q |
410 |
gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa |
509 |
Q |
|
|
||||||||||| | |||||| |||| ||||| ||| |||||||| ||||| | |||| || |||||||| || ||||||||||| ||||||||||| |
|
|
T |
33273629 |
gaatcagaaggaccctttcacgacatagcctacttcgtatcaaattagttacgctgtaatgattgcatatttgatggtgttctatgccgagagtttgaag |
33273728 |
T |
 |
Q |
510 |
taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg |
609 |
Q |
|
|
|||||||| ||||||||||||||| ||| |||||||| | | |||||||| |||||||||| || |||||||||||| | ||||| ||||| |
|
|
T |
33273729 |
taggatttgcttttgtgcatcgaggggaccatcatgtaatttataaattttgcttacatcatctataaaacaggatgcactaaatcgatgagatatttga |
33273828 |
T |
 |
Q |
610 |
ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
||||||||| | ||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
T |
33273829 |
tcatataaagccatagcaagggttgtcttccctattcctcccattccacaaattcctatagcacg |
33273893 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 486 - 673
Target Start/End: Original strand, 33306399 - 33306586
Alignment:
Q |
486 |
gtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngat |
585 |
Q |
|
|
||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||| || |||||||| |||||||||||||| ||| |
|
|
T |
33306399 |
gtgttctatgcctagagtttgaaataggatttgcttttgtgcattgagtggaccatcatgtaaactataaattttggttacatcatcaatatagcaggat |
33306498 |
T |
 |
Q |
586 |
gcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac |
673 |
Q |
|
|
||||||||| | ||||| |||||| ||||||||| | ||||||||||||| ||||| |||||||| |||||| ||||||||||||||| |
|
|
T |
33306499 |
gcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctattcctcccattccagaaattcctatagcac |
33306586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 411 - 674
Target Start/End: Original strand, 33402452 - 33402715
Alignment:
Q |
411 |
aatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaat |
510 |
Q |
|
|
||||||||| || ||||| ||| ||||| | |||||||||| | ||||| ||||| || |||||||| || ||||||||||| |||||||||| | |
|
|
T |
33402452 |
aatcagaagagccttttcacgacgtagcctacgttgtatcaaatcaattgcactgtaacgattgcatatttgatggtgttctatgccgagagtttgatgt |
33402551 |
T |
 |
Q |
511 |
aggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggc |
610 |
Q |
|
|
||||||| |||||||||||| | ||| ||||| || ||| |||||||| ||||||||||||| |||||||||||| | ||||||||||||| |
|
|
T |
33402552 |
aggatttgcttttgtgcatcaattgggccatcatataatctataaattttgcttacatcatcaatgaaacaggatgcactaaatcgatgagagatttggc |
33402651 |
T |
 |
Q |
611 |
catataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
|||||||| || ||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| |
|
|
T |
33402652 |
catataaattcatagcaagggttgtcttccctattcctcccattccacaaattcttatagcacg |
33402715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 674
Target Start/End: Complemental strand, 31561052 - 31560788
Alignment:
Q |
410 |
gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa |
509 |
Q |
|
|
||||||||||||| ||||||||||| || | || | |||||| ||||||| |||| || |||||||| |||||||||||||| || |||||||| |
|
|
T |
31561052 |
gaatcagaagggccctttcatgacatagatttattcgcatcaaattagttgcgctgtaatgattgcatatttgattgtgttctatgccgacagtttgaag |
31560953 |
T |
 |
Q |
510 |
taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg |
609 |
Q |
|
|
|||||||| ||||||||||||||| ||| |||| | ||| |||||||| ||||||||||||| |||||||||||| | ||||| |||||| |
|
|
T |
31560952 |
taggatttgcttttgtgcatcgaggggaccatcacctgatctataaattttgcttacatcatcaataaaacaggatgcactaaatcgatgagatatttgg |
31560853 |
T |
 |
Q |
610 |
ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
||||| |||||| ||||||||| ||| ||||| |||||||| |||||||||||||||||| |||| |
|
|
T |
31560852 |
ccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataacacg |
31560788 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 674
Target Start/End: Complemental strand, 31567371 - 31567107
Alignment:
Q |
410 |
gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa |
509 |
Q |
|
|
||||||||||||| |||||| |||| ||||| ||| |||||||| |||| || |||| || |||||||| | ||| ||||||| | |||||||| |
|
|
T |
31567371 |
gaatcagaagggccctttcacgacatagccttcttcgtatcaaattagtggcgctgtaatgattgcatatttgttggtgatctatgccaacagtttgaag |
31567272 |
T |
 |
Q |
510 |
taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg |
609 |
Q |
|
|
|||||||| ||||||||||||||| ||| ||||| | ||| |||||||| ||||||||||||| |||||||||||| | ||||| |||||| |
|
|
T |
31567271 |
taggatttgcttttgtgcatcgaggggaccatcatatgatctataaattttgcttacatcatcaatataacaagatgcactaaatcgatgagatatttgg |
31567172 |
T |
 |
Q |
610 |
ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
|||||||||||| |||||||| ||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
T |
31567171 |
ccatataaagtctcagcaagggctgtcttccctattccccccattccacaaattcctatagcacg |
31567107 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 411 - 673
Target Start/End: Original strand, 33411791 - 33412053
Alignment:
Q |
411 |
aatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaat |
510 |
Q |
|
|
|||||||||||| ||||||||| | ||| | | |||||||| ||||||| ||||| || |||||||| || ||||||||||| || |||||||| | |
|
|
T |
33411791 |
aatcagaagggccttttcatgacgtaacctacgtcgtatcaaatcagttgcactgtaacgattgcatatttgatggtgttctatgccgacagtttgaagt |
33411890 |
T |
 |
Q |
511 |
aggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggc |
610 |
Q |
|
|
||||||| | ||||||||||||| ||| ||||| || ||| |||||||| ||||||| || || |||||||||||||| ||||| || |||| |
|
|
T |
33411891 |
aggatttgcctttgtgcatcgaggggaccatcatataatctataaattttgcttacatcgtctataaaacaagatgcactaaattgatgagatatctggc |
33411990 |
T |
 |
Q |
611 |
catataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac |
673 |
Q |
|
|
||||||||||| ||||||||||||| || || ||||| || |||||||||||||| ||||||| |
|
|
T |
33411991 |
catataaagtcatagcaagggttgtctttcctattccgcccattccacaaattccaatagcac |
33412053 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 9168675 - 9168875
Alignment:
Q |
474 |
gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca |
573 |
Q |
|
|
|||||||| || ||||||||||| ||||||||||| || ||||| |||||||||||||||||| |||||| | ||| ||||||||| ||| ||||||| |
|
|
T |
9168675 |
gcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggccatcatgcaatctataaattttacttatatcatca |
9168774 |
T |
 |
Q |
574 |
atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac |
673 |
Q |
|
|
|| |||||||||||| | ||||| |||||| |||||||| | | ||||| ||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
T |
9168775 |
ataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattcctatagcac |
9168874 |
T |
 |
Q |
674 |
g |
674 |
Q |
|
|
| |
|
|
T |
9168875 |
g |
9168875 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 33263452 - 33263679
Alignment:
Q |
27 |
caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactc |
126 |
Q |
|
|
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | ||||||| || | |||| ||| ||||||||||| |
|
|
T |
33263452 |
caagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaa |
33263551 |
T |
 |
Q |
127 |
gttgggcttcttgagatata---tgcat---tgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatcttttcatgaatca |
220 |
Q |
|
|
||||||||| ||||||||| | | | |||||||||||| |||||||||||||||||||||||| ||||||| |||||| || ||||| | || |
|
|
T |
33263552 |
cttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaattgttcaacgtccac---ctcttcatcatcca |
33263648 |
T |
 |
Q |
221 |
aaactatggcttcaacatgtttttcctaaag |
251 |
Q |
|
|
|||||||||||| ||| || ||||||||||| |
|
|
T |
33263649 |
aaactatggctttaacttgcttttcctaaag |
33263679 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 33264550 - 33264750
Alignment:
Q |
474 |
gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca |
573 |
Q |
|
|
|||||||| || ||||||||||| ||||||||| |||||||| |||||||||||| | |||| |||||||| ||| ||||||| ||||||||||| |
|
|
T |
33264550 |
gcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatctattggaccatcatgtaatctaaaaattttgcttacatcatca |
33264649 |
T |
 |
Q |
574 |
atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac |
673 |
Q |
|
|
|| |||||| |||| | ||| ||||||||||||||||| || ||||||||||||| ||||| |||||||| || || |||||||||||||||| |
|
|
T |
33264650 |
atgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac |
33264749 |
T |
 |
Q |
674 |
g |
674 |
Q |
|
|
| |
|
|
T |
33264750 |
g |
33264750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 446 - 672
Target Start/End: Original strand, 33389945 - 33390171
Alignment:
Q |
446 |
gtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatg |
545 |
Q |
|
|
|||||||| ||||||| ||||| || |||||||| || ||||| |||| ||||||||||||||| |||| |||||||||||| | ||| |||| |
|
|
T |
33389945 |
gtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttttatgtcgagagtttgaaatagaatttgcttttgtgcatccaaaggaccatcaca |
33390044 |
T |
 |
Q |
546 |
tagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaatt |
645 |
Q |
|
|
|| ||| || ||||| ||||||||||||| |||||||||| | ||||| |||||| ||||||||||| | ||||||||||| ||||| ||| |
|
|
T |
33390045 |
taatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctatt |
33390144 |
T |
 |
Q |
646 |
cctccaattccacaaattcctatagca |
672 |
Q |
|
|
||||| ||||||||||||||||||||| |
|
|
T |
33390145 |
cctcccattccacaaattcctatagca |
33390171 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 33401435 - 33401671
Alignment:
Q |
27 |
caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactc |
126 |
Q |
|
|
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| | | ||| | || | |||||||| ||||||||||| |
|
|
T |
33401435 |
caagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaa |
33401534 |
T |
 |
Q |
127 |
gttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-ttcatgaatc |
219 |
Q |
|
|
||| || || |||||||| |||| ||||||||||| | ||||||||||||||||||||| |||||||||| |||||| |||| | | | || |
|
|
T |
33401535 |
tttgagcctcctgagatattccaattgcacttgatgatgagaagtctaagattactcatttttgataagtgttcaacatccacc-tcttcattacgtttc |
33401633 |
T |
 |
Q |
220 |
aaaactatggcttcaacatgtttttcctaaagtattgc |
257 |
Q |
|
|
|||| |||||||||||||| ||||||||||| ||||| |
|
|
T |
33401634 |
aaaagtatggcttcaacattcttttcctaaagcattgc |
33401671 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 410 - 674
Target Start/End: Original strand, 33287379 - 33287643
Alignment:
Q |
410 |
gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa |
509 |
Q |
|
|
|||| |||||||| |||||| ||| ||||| |||||||||||| |||||||| ||| || || |||||| | || || |||||| | || ||||||| |
|
|
T |
33287379 |
gaataagaagggccctttcacgacgtagcctactttgtatcaaattagttgcacggtgacgattgcatatatgatggtcttctattccgacggtttgaag |
33287478 |
T |
 |
Q |
510 |
taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg |
609 |
Q |
|
|
|||||||| ||||||||||||||| ||| |||||||| ||| | |||| | ||||| ||||| ||| |||||||| | || || ||||| |
|
|
T |
33287479 |
taggatttccttttgtgcatcgaggggaccatcatgtaatctaaattttttggcaacatcttcaataaaacaagatccactaaatcgatgggatatttga |
33287578 |
T |
 |
Q |
610 |
ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
||||||||| | ||| ||||||||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
T |
33287579 |
tcatataaagccatagaaagggttgttttccctattcctcccattccacaaattcctattgcacg |
33287643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 33388855 - 33389098
Alignment:
Q |
26 |
tcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagact |
125 |
Q |
|
|
|||||||||| |||||||| ||| |||||| |||||||| ||||||||||| | ||||||| | ||||| || | ||||||||| |||||||||||| |
|
|
T |
33388855 |
tcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagact |
33388954 |
T |
 |
Q |
126 |
cgttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-------ttc |
212 |
Q |
|
|
|| |||||| |||| ||||| | | ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| |||| || |
|
|
T |
33388955 |
cgatgggctacttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacc-tcttcaacatcatc |
33389053 |
T |
 |
Q |
213 |
atgaatcaaaactatggcttcaacatgtttttcctaaagtattgc |
257 |
Q |
|
|
|| | |||||||||||||||||||||| |||||||||| ||||| |
|
|
T |
33389054 |
atcattcaaaactatggcttcaacatgcctttcctaaagcattgc |
33389098 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 33286360 - 33286599
Alignment:
Q |
27 |
caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactc |
126 |
Q |
|
|
||||||||||||||||||||||||||||| |||| ||| ||||||||| | | |||||||| | |||||||| | |||||||| ||||||||||||| |
|
|
T |
33286360 |
caagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagactc |
33286459 |
T |
 |
Q |
127 |
gttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtcca---ccatcttttcatgaa |
217 |
Q |
|
|
| |||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | || | | || ||||| | |
|
|
T |
33286460 |
aataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcatttttgacaagtgttcaacattcaatccaacctcttcatcat |
33286559 |
T |
 |
Q |
218 |
tcaaaactatggcttcaacatgtttttcctaaagtattgc |
257 |
Q |
|
|
||||||||| ||||| |||||| ||||||||||| ||||| |
|
|
T |
33286560 |
tcaaaactaaggctttaacatgcttttcctaaagcattgc |
33286599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 33272613 - 33272789
Alignment:
Q |
26 |
tcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagact |
125 |
Q |
|
|
||||||||||||||| ||| |||||||||| |||||||||||| | | ||| | |||||||| | ||||||| || | |||||||||| |||||||| || |
|
|
T |
33272613 |
tcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttgaaaggct |
33272712 |
T |
 |
Q |
126 |
cgttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttgacaagtgttcaa |
196 |
Q |
|
|
|| | | || | || ||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
T |
33272713 |
cgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttgccaagtgttcaa |
33272789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 33058377 - 33058438
Alignment:
Q |
26 |
tcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat |
87 |
Q |
|
|
|||||||||||||||||||||||||||||| |||| ||| ||||||||||| | |||||||| |
|
|
T |
33058377 |
tcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat |
33058438 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 31562081 - 31562021
Alignment:
Q |
27 |
caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat |
87 |
Q |
|
|
||||||||||||||||||||||| ||||| |||||||| ||||||||||| | |||||||| |
|
|
T |
31562081 |
caagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatat |
31562021 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 31561757 - 31561690
Alignment:
Q |
343 |
ttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctg |
410 |
Q |
|
|
|||||||||| |||||||||| |||||| ||||||||||| | ||||||| |||||||||||||||| |
|
|
T |
31561757 |
ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctg |
31561690 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 33058513 - 33058623
Alignment:
Q |
153 |
gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccac-----catctt-ttcatgaatcaaaactatggcttcaacatgtttttcc |
246 |
Q |
|
|
||||| ||||| ||| ||||||||||||||||||||||||||||||||| | |||||| || | | ||||||||||||||||||||| |||||| |
|
|
T |
33058513 |
gatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcc |
33058612 |
T |
 |
Q |
247 |
taaagtattgc |
257 |
Q |
|
|
||||| ||||| |
|
|
T |
33058613 |
taaagcattgc |
33058623 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 9167705 - 9167750
Alignment:
Q |
151 |
ttgatgatgagcactctaagattactcatttttgacaagtgttcaa |
196 |
Q |
|
|
||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
T |
9167705 |
ttgatgatgagcaatctaagactactcatttttgacaagtgttcaa |
9167750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 33305294 - 33305347
Alignment:
Q |
23 |
tcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatact |
76 |
Q |
|
|
|||| |||||||||||||||||||||||||||| |||| ||| ||||||||||| |
|
|
T |
33305294 |
tctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatact |
33305347 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 33410916 - 33410959
Alignment:
Q |
153 |
gatgatgagcactctaagattactcatttttgacaagtgttcaa |
196 |
Q |
|
|
||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
T |
33410916 |
gatgatgagcaatctaagattactcatttttgaaaagtgttcaa |
33410959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
Q |
152 |
tgatgatgagcactctaagattactcatttttgacaag |
189 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
T |
31561935 |
tgatgatgagcaatctaagattactcatttttgacaag |
31561898 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 9167579 - 9167679
Alignment:
Q |
25 |
ttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagac |
124 |
Q |
|
|
|||||||||| || |||||||||||||| || |||||| | ||||||||||| | |||||||| | ||||| || | |||||||| |||| ||||||| |
|
|
T |
9167579 |
ttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactcaagatatcttaattcgttcgaaagac |
9167678 |
T |
 |
Q |
125 |
t |
125 |
Q |
|
|
| |
|
|
T |
9167679 |
t |
9167679 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 33305616 - 33305658
Alignment:
Q |
341 |
atttctaaacagctactttaccatattctccttcataacattg |
383 |
Q |
|
|
|||||||||||| |||||||||||||||||| |||||||||| |
|
|
T |
33305616 |
atttctaaacagttactttaccatattctccaccataacattg |
33305658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 33411082 - 33411120
Alignment:
Q |
341 |
atttctaaacagctactttaccatattctccttcataac |
379 |
Q |
|
|
|||||||||||| |||||||||||||||||| ||||||| |
|
|
T |
33411082 |
atttctaaacagttactttaccatattctccatcataac |
33411120 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 33643556 - 33643486
Alignment:
Q |
340 |
tatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctg |
410 |
Q |
|
|
||||| ||||||||| ||||||||||||||| ||| ||||||| | |||||||| | |||||||| |||| |
|
|
T |
33643556 |
tatttttaaacagctgatttaccatattctccatcacaacattgtagatttgttttttggaccacagcctg |
33643486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 33643744 - 33643702
Alignment:
Q |
154 |
atgatgagcactctaagattactcatttttgacaagtgttcaa |
196 |
Q |
|
|
||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
T |
33643744 |
atgatcagcaatctaagattactcatttttgacaagtattcaa |
33643702 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 33263778 - 33263847
Alignment:
Q |
340 |
tatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacct |
409 |
Q |
|
|
|||||||| | ||||||||||||||||||||| || |||||||| | | |||||| |||||||||||| |
|
|
T |
33263778 |
tatttctatatagctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacct |
33263847 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 33410749 - 33410790
Alignment:
Q |
22 |
ttcttcaagatcaattctacaagttcattggggttaaaactt |
63 |
Q |
|
|
||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
T |
33410749 |
ttcttcaagatcaattcaacaagttcattagggtgaaaactt |
33410790 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 33643673 - 33643636
Alignment:
Q |
219 |
caaaactatggcttcaacatgtttttcctaaagtattg |
256 |
Q |
|
|
||||||||||||||||||||| ||||||||||| |||| |
|
|
T |
33643673 |
caaaactatggcttcaacatgcttttcctaaagcattg |
33643636 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 465 - 674
Target Start/End: Complemental strand, 17439016 - 17438807
Alignment:
Q |
465 |
gtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagtt |
564 |
Q |
|
|
||||| || |||||||| || ||||||||||| ||||||||||||| ||||| ||||||||| || |||||| |||||||| ||| |||||||| || |
|
|
T |
17439016 |
gtaacgattgcatatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcatgtaatctataaattttgctt |
17438917 |
T |
 |
Q |
565 |
acatcatcaatnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattc |
664 |
Q |
|
|
||||||||||| |||||| |||| | ||||||||||||||||||||| | |||||||||||| ||||| |||||||| || || ||||||| |
|
|
T |
17438916 |
acatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattc |
17438817 |
T |
 |
Q |
665 |
ctatagcacg |
674 |
Q |
|
|
|||||||||| |
|
|
T |
17438816 |
ctatagcacg |
17438807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 17440091 - 17439856
Alignment:
Q |
31 |
atcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttg |
130 |
Q |
|
|
||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||| ||||| || | |||||||| ||| ||||||| ||| |
|
|
T |
17440091 |
atcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaagacaacttg |
17439992 |
T |
 |
Q |
131 |
ggcttcttgagatatatgcatt---------gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-ttcatgaatca |
220 |
Q |
|
|
|| || ||||||| |||| | ||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||| || ||| |
|
|
T |
17439991 |
ggaatcctgagatagttgcagtatggttgacgatgatgagcaatctaagattactcatttttgacaaatgttcagcgtccacc-tcttcagtatatttca |
17439893 |
T |
 |
Q |
221 |
aaactatggcttcaacatgtttttcctaaagtattgc |
257 |
Q |
|
|
||||||||||||||||||| ||||||||||| ||||| |
|
|
T |
17439892 |
aaactatggcttcaacatgcttttcctaaagcattgc |
17439856 |
T |
 |
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Target: scaffold0428 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 8661 - 8861
Alignment:
Q |
474 |
gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca |
573 |
Q |
|
|
|||||||| || ||||||||||| ||||||||| |||||||| |||||||||||| | |||| |||||||| ||| ||||||| ||||||||||| |
|
|
T |
8661 |
gcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatcaattggaccatcatgtaatctaaaaattttgcttacatcatca |
8760 |
T |
 |
Q |
574 |
atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac |
673 |
Q |
|
|
|| |||||| |||| | ||| ||||||||||||||||| || ||||||||||||| ||||| |||||||| || || |||||||||||| ||| |
|
|
T |
8761 |
atgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacac |
8860 |
T |
 |
Q |
674 |
g |
674 |
Q |
|
|
| |
|
|
T |
8861 |
g |
8861 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 602 - 674
Target Start/End: Original strand, 28 - 100
Alignment:
Q |
602 |
agatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg |
674 |
Q |
|
|
||||||||||||||||| || ||||||||||||| ||||| |||||||| || || |||||||||||| |||| |
|
|
T |
28 |
agatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacg |
100 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 31478037 - 31477988
Alignment:
Q |
208 |
ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc |
257 |
Q |
|
|
||||||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
T |
31478037 |
ttttcatgattcaaaactatggcttcaacattcttttcctaaagcattgc |
31477988 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 667
Target Start/End: Original strand, 31019806 - 31019882
Alignment:
Q |
591 |
aaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta |
667 |
Q |
|
|
|||||| ||||||||||| |||||||||| ||||| || ||||| ||||| ||||| || || ||||||||||||| |
|
|
T |
31019806 |
aaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta |
31019882 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 667
Target Start/End: Complemental strand, 31489740 - 31489664
Alignment:
Q |
591 |
aaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta |
667 |
Q |
|
|
|||||| ||||||||||| |||||||||| ||||| || ||||| ||||| ||||| || || ||||||||||||| |
|
|
T |
31489740 |
aaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta |
31489664 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 667
Target Start/End: Original strand, 31029687 - 31029763
Alignment:
Q |
591 |
aaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta |
667 |
Q |
|
|
|||||| ||||||||||| |||||||||| |||| || ||||| ||||| ||||| || || ||||||||||||| |
|
|
T |
31029687 |
aaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattccta |
31029763 |
T |
 |
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