View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376-Insertion-6 (Length: 674)

Name: NF4376-Insertion-6
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376-Insertion-6
NF4376-Insertion-6
[»] chr6 (35 HSPs)
chr6 (337-674)||(33359843-33360180)
chr6 (8-257)||(33359511-33359760)
chr6 (410-674)||(33059400-33059664)
chr6 (474-674)||(33642581-33642781)
chr6 (410-674)||(33273629-33273893)
chr6 (486-673)||(33306399-33306586)
chr6 (411-674)||(33402452-33402715)
chr6 (410-674)||(31560788-31561052)
chr6 (410-674)||(31567107-31567371)
chr6 (411-673)||(33411791-33412053)
chr6 (474-674)||(9168675-9168875)
chr6 (27-251)||(33263452-33263679)
chr6 (474-674)||(33264550-33264750)
chr6 (446-672)||(33389945-33390171)
chr6 (27-257)||(33401435-33401671)
chr6 (410-674)||(33287379-33287643)
chr6 (26-257)||(33388855-33389098)
chr6 (27-257)||(33286360-33286599)
chr6 (26-196)||(33272613-33272789)
chr6 (26-87)||(33058377-33058438)
chr6 (27-87)||(31562021-31562081)
chr6 (343-410)||(31561690-31561757)
chr6 (153-257)||(33058513-33058623)
chr6 (151-196)||(9167705-9167750)
chr6 (23-76)||(33305294-33305347)
chr6 (153-196)||(33410916-33410959)
chr6 (152-189)||(31561898-31561935)
chr6 (25-125)||(9167579-9167679)
chr6 (341-383)||(33305616-33305658)
chr6 (341-379)||(33411082-33411120)
chr6 (340-410)||(33643486-33643556)
chr6 (154-196)||(33643702-33643744)
chr6 (340-409)||(33263778-33263847)
chr6 (22-63)||(33410749-33410790)
chr6 (219-256)||(33643636-33643673)
[»] chr2 (2 HSPs)
chr2 (465-674)||(17438807-17439016)
chr2 (31-257)||(17439856-17440091)
[»] scaffold0428 (1 HSPs)
scaffold0428 (474-674)||(8661-8861)
[»] scaffold1749 (1 HSPs)
scaffold1749 (602-674)||(28-100)
[»] chr4 (4 HSPs)
chr4 (208-257)||(31477988-31478037)
chr4 (591-667)||(31019806-31019882)
chr4 (591-667)||(31489664-31489740)
chr4 (591-667)||(31029687-31029763)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 337 - 674
Target Start/End: Original strand, 33359843 - 33360180
Alignment:
337 ctatatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctgaatcagaagggctctttcatgacaaa 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
33359843 ctatatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctgaatcaaaagggctctttcatgacata 33359942  T
437 gcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtgg 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33359943 gcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtgg 33360042  T
537 attatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgtt 636  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33360043 attatcatgtagtctgtaaattttagttacatcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgtt 33360142  T
637 ttcccaattcctccaattccacaaattcctatagcacg 674  Q
    ||||||||||||||||||||||||||||||||||||||    
33360143 ttcccaattcctccaattccacaaattcctatagcacg 33360180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 33359511 - 33359760
Alignment:
8 gtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatct 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33359511 gtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatct 33359610  T
108 taatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33359611 taatgcgtttgaaagactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatc 33359710  T
208 ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
33359711 ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 33359760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 410 - 674
Target Start/End: Original strand, 33059400 - 33059664
Alignment:
410 gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa 509  Q
    |||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||| || ||||||||  | ||||||||||| ||||||||||||    
33059400 gaatcataagggttctttcatgacatagcttcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaa 33059499  T
510 taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg 609  Q
    ||||||||  |||||| |||||||||||| |||||||| ||  |||||||| |||||||| |||||       |||||||||||||| ||||| ||||||    
33059500 taggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttgg 33059599  T
610 ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
33059600 ccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacg 33059664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 474 - 674
Target Start/End: Complemental strand, 33642781 - 33642581
Alignment:
474 gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca 573  Q
    |||||||| || |||||||||||  ||||||||||||||||||| ||||||||| |||||||||  |||||||| ||| ||||||||  |||||||||||    
33642781 gcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcgagtggaccatcatgtaatctataaattttgcttacatcatca 33642682  T
574 atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 673  Q
    ||       |||||||||||| | ||||| |||||| ||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
33642681 ataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattcctatagcac 33642582  T
674 g 674  Q
    |    
33642581 g 33642581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 410 - 674
Target Start/End: Original strand, 33273629 - 33273893
Alignment:
410 gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa 509  Q
    ||||||||||| | |||||| |||| ||||| ||| |||||||| ||||| |   ||||  || |||||||| || ||||||||||| |||||||||||     
33273629 gaatcagaaggaccctttcacgacatagcctacttcgtatcaaattagttacgctgtaatgattgcatatttgatggtgttctatgccgagagtttgaag 33273728  T
510 taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg 609  Q
    |||||||| ||||||||||||||| |||  |||||||| | | ||||||||  |||||||||| ||       |||||||||||| | ||||| |||||     
33273729 taggatttgcttttgtgcatcgaggggaccatcatgtaatttataaattttgcttacatcatctataaaacaggatgcactaaatcgatgagatatttga 33273828  T
610 ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
     ||||||||| | ||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
33273829 tcatataaagccatagcaagggttgtcttccctattcctcccattccacaaattcctatagcacg 33273893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 486 - 673
Target Start/End: Original strand, 33306399 - 33306586
Alignment:
486 gtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngat 585  Q
    |||||||||||  ||||||||||||||||||| ||||||||||| |||||||  ||||||||  || |||||||| ||||||||||||||       |||    
33306399 gtgttctatgcctagagtttgaaataggatttgcttttgtgcattgagtggaccatcatgtaaactataaattttggttacatcatcaatatagcaggat 33306498  T
586 gcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 673  Q
    ||||||||| | ||||| |||||| ||||||||| | ||||||||||||| ||||| |||||||| |||||| |||||||||||||||    
33306499 gcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctattcctcccattccagaaattcctatagcac 33306586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 411 - 674
Target Start/End: Original strand, 33402452 - 33402715
Alignment:
411 aatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaat 510  Q
    ||||||||| ||  ||||| |||  ||||| | ||||||||||  | |||||  ||||| || |||||||| || ||||||||||| ||||||||||  |    
33402452 aatcagaagagccttttcacgacgtagcctacgttgtatcaaatcaattgcactgtaacgattgcatatttgatggtgttctatgccgagagtttgatgt 33402551  T
511 aggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggc 610  Q
    ||||||| |||||||||||| | |||   ||||| || ||| ||||||||  |||||||||||||       |||||||||||| | |||||||||||||    
33402552 aggatttgcttttgtgcatcaattgggccatcatataatctataaattttgcttacatcatcaatgaaacaggatgcactaaatcgatgagagatttggc 33402651  T
611 catataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
    |||||||| || ||||||||||||| ||||| |||||||| ||||||||||||| |||||||||    
33402652 catataaattcatagcaagggttgtcttccctattcctcccattccacaaattcttatagcacg 33402715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 674
Target Start/End: Complemental strand, 31561052 - 31560788
Alignment:
410 gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa 509  Q
    ||||||||||||| ||||||||||| ||  |  || | |||||| |||||||   ||||  || |||||||| |||||||||||||| || ||||||||     
31561052 gaatcagaagggccctttcatgacatagatttattcgcatcaaattagttgcgctgtaatgattgcatatttgattgtgttctatgccgacagtttgaag 31560953  T
510 taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg 609  Q
    |||||||| ||||||||||||||| |||  ||||  |  ||| ||||||||  |||||||||||||       |||||||||||| | ||||| ||||||    
31560952 taggatttgcttttgtgcatcgaggggaccatcacctgatctataaattttgcttacatcatcaataaaacaggatgcactaaatcgatgagatatttgg 31560853  T
610 ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
    ||||| |||||| ||||||||| ||| ||||| |||||||| |||||||||||||||||| ||||    
31560852 ccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctataacacg 31560788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 410 - 674
Target Start/End: Complemental strand, 31567371 - 31567107
Alignment:
410 gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa 509  Q
    ||||||||||||| |||||| |||| ||||| ||| |||||||| |||| ||   ||||  || ||||||||  | ||| |||||||  | ||||||||     
31567371 gaatcagaagggccctttcacgacatagccttcttcgtatcaaattagtggcgctgtaatgattgcatatttgttggtgatctatgccaacagtttgaag 31567272  T
510 taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg 609  Q
    |||||||| ||||||||||||||| |||  ||||| |  ||| ||||||||  |||||||||||||       |||||||||||| | ||||| ||||||    
31567271 taggatttgcttttgtgcatcgaggggaccatcatatgatctataaattttgcttacatcatcaatataacaagatgcactaaatcgatgagatatttgg 31567172  T
610 ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
    ||||||||||||  |||||||| ||| ||||| ||||| || |||||||||||||||||||||||    
31567171 ccatataaagtctcagcaagggctgtcttccctattccccccattccacaaattcctatagcacg 31567107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 411 - 673
Target Start/End: Original strand, 33411791 - 33412053
Alignment:
411 aatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaat 510  Q
    ||||||||||||  |||||||||  | ||| | | ||||||||  |||||||  ||||| || |||||||| || ||||||||||| || |||||||| |    
33411791 aatcagaagggccttttcatgacgtaacctacgtcgtatcaaatcagttgcactgtaacgattgcatatttgatggtgttctatgccgacagtttgaagt 33411890  T
511 aggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggc 610  Q
    ||||||| | ||||||||||||| |||  ||||| || ||| ||||||||  ||||||| || ||       |||||||||||||| ||||| || ||||    
33411891 aggatttgcctttgtgcatcgaggggaccatcatataatctataaattttgcttacatcgtctataaaacaagatgcactaaattgatgagatatctggc 33411990  T
611 catataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 673  Q
    ||||||||||| ||||||||||||| || || ||||| || |||||||||||||| |||||||    
33411991 catataaagtcatagcaagggttgtctttcctattccgcccattccacaaattccaatagcac 33412053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 9168675 - 9168875
Alignment:
474 gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca 573  Q
    |||||||| || ||||||||||| ||||||||||| || ||||| ||||||||||||||||||   |||||| | ||| ||||||||| ||| |||||||    
9168675 gcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggccatcatgcaatctataaattttacttatatcatca 9168774  T
574 atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 673  Q
    ||       |||||||||||| | ||||| |||||| ||||||||  | | ||||| ||||| ||||| |||||||| ||||||||||||||||||||||    
9168775 ataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattcctatagcac 9168874  T
674 g 674  Q
    |    
9168875 g 9168875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 33263452 - 33263679
Alignment:
27 caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactc 126  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||   |||||||| | ||||||| || | |||| |||  |||||||||||      
33263452 caagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaa 33263551  T
127 gttgggcttcttgagatata---tgcat---tgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatcttttcatgaatca 220  Q
     ||||||||| |||||||||   | | |   |||||||||||| |||||||||||||||||||||||| ||||||| ||||||   || ||||| |  ||    
33263552 cttgggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaattgttcaacgtccac---ctcttcatcatcca 33263648  T
221 aaactatggcttcaacatgtttttcctaaag 251  Q
    |||||||||||| ||| || |||||||||||    
33263649 aaactatggctttaacttgcttttcctaaag 33263679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 33264550 - 33264750
Alignment:
474 gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca 573  Q
    |||||||| || |||||||||||  |||||||||  |||||||| |||||||||||| | ||||  |||||||| |||  |||||||  |||||||||||    
33264550 gcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatctattggaccatcatgtaatctaaaaattttgcttacatcatca 33264649  T
574 atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 673  Q
    ||       ||||||  |||| | ||| ||||||||||||||||| || ||||||||||||| ||||| |||||||| || || ||||||||||||||||    
33264650 atgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 33264749  T
674 g 674  Q
    |    
33264750 g 33264750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 446 - 672
Target Start/End: Original strand, 33389945 - 33390171
Alignment:
446 gtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatg 545  Q
    ||||||||  |||||||  ||||| || |||||||| || ||||| ||||  ||||||||||||||| |||| |||||||||||| |  |||  ||||      
33389945 gtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttttatgtcgagagtttgaaatagaatttgcttttgtgcatccaaaggaccatcaca 33390044  T
546 tagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaatt 645  Q
    || ||| || |||||  |||||||||||||         |||||||||| | ||||| |||||| ||||||||||| | ||||||||||| ||||| |||    
33390045 taatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctatt 33390144  T
646 cctccaattccacaaattcctatagca 672  Q
    ||||| |||||||||||||||||||||    
33390145 cctcccattccacaaattcctatagca 33390171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 33401435 - 33401671
Alignment:
27 caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactc 126  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| | | ||| | || | |||||||| |||||||||||       
33401435 caagatcaattctacaagttcattggggtgaaaacttgttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaa 33401534  T
127 gttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-ttcatgaatc 219  Q
     ||| || || ||||||||      |||| ||||||||||| | ||||||||||||||||||||| ||||||||||  |||||| ||||  | | |  ||    
33401535 tttgagcctcctgagatattccaattgcacttgatgatgagaagtctaagattactcatttttgataagtgttcaacatccacc-tcttcattacgtttc 33401633  T
220 aaaactatggcttcaacatgtttttcctaaagtattgc 257  Q
    |||| ||||||||||||||  ||||||||||| |||||    
33401634 aaaagtatggcttcaacattcttttcctaaagcattgc 33401671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 410 - 674
Target Start/End: Original strand, 33287379 - 33287643
Alignment:
410 gaatcagaagggctctttcatgacaaagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaa 509  Q
    |||| |||||||| |||||| |||  ||||| |||||||||||| |||||||| ||| || || |||||| | || || |||||| | ||  |||||||     
33287379 gaataagaagggccctttcacgacgtagcctactttgtatcaaattagttgcacggtgacgattgcatatatgatggtcttctattccgacggtttgaag 33287478  T
510 taggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaatnnnnnnngatgcactaaattggtgagagatttgg 609  Q
    |||||||| ||||||||||||||| |||  |||||||| |||  |  |||| |  ||||| |||||       ||| |||||||| | || || |||||     
33287479 taggatttccttttgtgcatcgaggggaccatcatgtaatctaaattttttggcaacatcttcaataaaacaagatccactaaatcgatgggatatttga 33287578  T
610 ccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
     ||||||||| | ||| ||||||||||||||| |||||||| ||||||||||||||||| |||||    
33287579 tcatataaagccatagaaagggttgttttccctattcctcccattccacaaattcctattgcacg 33287643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 33388855 - 33389098
Alignment:
26 tcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagact 125  Q
    |||||||||| |||||||| ||| |||||| |||||||| ||||||||||| | |||||||    | ||||| || | ||||||||| ||||||||||||    
33388855 tcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagact 33388954  T
126 cgttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-------ttc 212  Q
    || |||||| |||| |||||  | |      ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| ||||        ||    
33388955 cgatgggctacttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacc-tcttcaacatcatc 33389053  T
213 atgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 257  Q
    || | ||||||||||||||||||||||  |||||||||| |||||    
33389054 atcattcaaaactatggcttcaacatgcctttcctaaagcattgc 33389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 33286360 - 33286599
Alignment:
27 caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactc 126  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| | | |||||||| |   |||||||| | ||||||||  |||||||||||||    
33286360 caagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagactc 33286459  T
127 gttgggcttcttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtcca---ccatcttttcatgaa 217  Q
      | ||||||  |||||||   ||       |||||||||||| ||||||||||||||||||||||||||||||||  | ||   | | || ||||| |     
33286460 aataggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcatttttgacaagtgttcaacattcaatccaacctcttcatcat 33286559  T
218 tcaaaactatggcttcaacatgtttttcctaaagtattgc 257  Q
    ||||||||| ||||| |||||| ||||||||||| |||||    
33286560 tcaaaactaaggctttaacatgcttttcctaaagcattgc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 33272613 - 33272789
Alignment:
26 tcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagact 125  Q
    ||||||||||||||| ||| |||||||||| |||||||||||| | | ||| | |||||||| | ||||||| || | |||||||||| |||||||| ||    
33272613 tcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttgaaaggct 33272712  T
126 cgttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttgacaagtgttcaa 196  Q
    || | | || | || |||||       ||| ||||| ||||||| |||||||||||||||||||| |||||||||||    
33272713 cgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttgccaagtgttcaa 33272789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 33058377 - 33058438
Alignment:
26 tcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat 87  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||    
33058377 tcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat 33058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 31562081 - 31562021
Alignment:
27 caagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat 87  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||| | ||||||||    
31562081 caagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatat 31562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 343 - 410
Target Start/End: Complemental strand, 31561757 - 31561690
Alignment:
343 ttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctg 410  Q
    ||||||||||  |||||||||| |||||| ||||||||||| | ||||||| ||||||||||||||||    
31561757 ttctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctg 31561690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 33058513 - 33058623
Alignment:
153 gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccac-----catctt-ttcatgaatcaaaactatggcttcaacatgtttttcc 246  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||| |     |||||| ||  | |  ||||||||||||||||||||| ||||||    
33058513 gatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcc 33058612  T
247 taaagtattgc 257  Q
    ||||| |||||    
33058613 taaagcattgc 33058623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 9167705 - 9167750
Alignment:
151 ttgatgatgagcactctaagattactcatttttgacaagtgttcaa 196  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
9167705 ttgatgatgagcaatctaagactactcatttttgacaagtgttcaa 9167750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 33305294 - 33305347
Alignment:
23 tcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatact 76  Q
    |||| |||||||||||||||||||||||||||| |||| ||| |||||||||||    
33305294 tctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatact 33305347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 33410916 - 33410959
Alignment:
153 gatgatgagcactctaagattactcatttttgacaagtgttcaa 196  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaa 33410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
152 tgatgatgagcactctaagattactcatttttgacaag 189  Q
    |||||||||||| |||||||||||||||||||||||||    
31561935 tgatgatgagcaatctaagattactcatttttgacaag 31561898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 9167579 - 9167679
Alignment:
25 ttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagac 124  Q
    |||||||||| || |||||||||||||| || |||||| | ||||||||||| | ||||||||   | ||||| || | |||||||| |||| |||||||    
9167579 ttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactcaagatatcttaattcgttcgaaagac 9167678  T
125 t 125  Q
    |    
9167679 t 9167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 33305616 - 33305658
Alignment:
341 atttctaaacagctactttaccatattctccttcataacattg 383  Q
    |||||||||||| ||||||||||||||||||  ||||||||||    
33305616 atttctaaacagttactttaccatattctccaccataacattg 33305658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 33411082 - 33411120
Alignment:
341 atttctaaacagctactttaccatattctccttcataac 379  Q
    |||||||||||| |||||||||||||||||| |||||||    
33411082 atttctaaacagttactttaccatattctccatcataac 33411120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 33643556 - 33643486
Alignment:
340 tatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacctg 410  Q
    ||||| |||||||||  ||||||||||||||| ||| ||||||| | |||||||| | |||||||| ||||    
33643556 tatttttaaacagctgatttaccatattctccatcacaacattgtagatttgttttttggaccacagcctg 33643486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 33643744 - 33643702
Alignment:
154 atgatgagcactctaagattactcatttttgacaagtgttcaa 196  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
33643744 atgatcagcaatctaagattactcatttttgacaagtattcaa 33643702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 33263778 - 33263847
Alignment:
340 tatttctaaacagctactttaccatattctccttcataacattgcaaatttgtttatgggaccacaacct 409  Q
    |||||||| | ||||||||||||||||||||| || |||||||| | | ||||||   ||||||||||||    
33263778 tatttctatatagctactttaccatattctccatcttaacattgtagaattgttttgcggaccacaacct 33263847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 33410749 - 33410790
Alignment:
22 ttcttcaagatcaattctacaagttcattggggttaaaactt 63  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
33410749 ttcttcaagatcaattcaacaagttcattagggtgaaaactt 33410790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 33643673 - 33643636
Alignment:
219 caaaactatggcttcaacatgtttttcctaaagtattg 256  Q
    ||||||||||||||||||||| ||||||||||| ||||    
33643673 caaaactatggcttcaacatgcttttcctaaagcattg 33643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 465 - 674
Target Start/End: Complemental strand, 17439016 - 17438807
Alignment:
465 gtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagtt 564  Q
    ||||| || |||||||| || |||||||||||  ||||||||||||| ||||| ||||||||| || ||||||  |||||||| ||| ||||||||  ||    
17439016 gtaacgattgcatatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcatgtaatctataaattttgctt 17438917  T
565 acatcatcaatnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattc 664  Q
    |||||||||||       ||||||  |||| | |||||||||||||||||||||  |  |||||||||||| ||||| |||||||| || || |||||||    
17438916 acatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattc 17438817  T
665 ctatagcacg 674  Q
    ||||||||||    
17438816 ctatagcacg 17438807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 17440091 - 17439856
Alignment:
31 atcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttg 130  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||     ||||| || | ||||||||  ||| |||||||   |||    
17440091 atcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaagacaacttg 17439992  T
131 ggcttcttgagatatatgcatt---------gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatctt-ttcatgaatca 220  Q
    ||  || |||||||  |||| |         ||||||||||| |||||||||||||||||||||||| ||||||  ||||||| ||||    ||   |||    
17439991 ggaatcctgagatagttgcagtatggttgacgatgatgagcaatctaagattactcatttttgacaaatgttcagcgtccacc-tcttcagtatatttca 17439893  T
221 aaactatggcttcaacatgtttttcctaaagtattgc 257  Q
    ||||||||||||||||||| ||||||||||| |||||    
17439892 aaactatggcttcaacatgcttttcctaaagcattgc 17439856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 8661 - 8861
Alignment:
474 gcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatcatgtagtctgtaaattttagttacatcatca 573  Q
    |||||||| || |||||||||||  |||||||||  |||||||| |||||||||||| | ||||  |||||||| |||  |||||||  |||||||||||    
8661 gcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatcaattggaccatcatgtaatctaaaaattttgcttacatcatca 8760  T
574 atnnnnnnngatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 673  Q
    ||       ||||||  |||| | ||| ||||||||||||||||| || ||||||||||||| ||||| |||||||| || || |||||||||||| |||    
8761 atgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacac 8860  T
674 g 674  Q
    |    
8861 g 8861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 602 - 674
Target Start/End: Original strand, 28 - 100
Alignment:
602 agatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacg 674  Q
    ||||||||||||||||| || ||||||||||||| ||||| |||||||| || || |||||||||||| ||||    
28 agatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacg 100  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 31478037 - 31477988
Alignment:
208 ttttcatgaatcaaaactatggcttcaacatgtttttcctaaagtattgc 257  Q
    ||||||||| |||||||||||||||||||||  ||||||||||| |||||    
31478037 ttttcatgattcaaaactatggcttcaacattcttttcctaaagcattgc 31477988  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 667
Target Start/End: Original strand, 31019806 - 31019882
Alignment:
591 aaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta 667  Q
    |||||| ||||||||||| ||||||||||  ||||| || ||||| ||||| ||||| || || |||||||||||||    
31019806 aaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta 31019882  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 667
Target Start/End: Complemental strand, 31489740 - 31489664
Alignment:
591 aaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta 667  Q
    |||||| ||||||||||| ||||||||||  ||||| || ||||| ||||| ||||| || || |||||||||||||    
31489740 aaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta 31489664  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 667
Target Start/End: Original strand, 31029687 - 31029763
Alignment:
591 aaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattccta 667  Q
    |||||| ||||||||||| ||||||||||  ||||  || ||||| ||||| ||||| || || |||||||||||||    
31029687 aaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattccta 31029763  T

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