View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4376-Insertion-7 (Length: 363)
Name: NF4376-Insertion-7
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4376-Insertion-7 |
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[»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 53068842 - 53068487
Alignment:
Q |
8 |
caaattgggcaagcatttgatcttgtttgctgttttaggaacaaactccctcaaaggatatacatttacattatttgtttgcaattcctctagaagggga |
107 |
Q |
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T |
53068842 |
caaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggatatacatttacattatttgtttgcaattcctctagaagggga |
53068743 |
T |
 |
Q |
108 |
aaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaatagtactacttatttgaggaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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T |
53068742 |
aaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacaccatccaagtggagagttttgagtagtgaaatagtactatttatttgaggaa |
53068643 |
T |
 |
Q |
208 |
tgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
53068642 |
tgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacat |
53068543 |
T |
 |
Q |
308 |
gttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtga |
363 |
Q |
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T |
53068542 |
gttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtga |
53068487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 53059616 - 53059263
Alignment:
Q |
8 |
caaattgggcaagcatttgatcttgtttgctgttttaggaacaaactccctcaaaggatatacatttacattatttgtttgcaattcctctagaagggga |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||| |||| |
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T |
53059616 |
caaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggaaatacctttactttatttgtttgcaattcctccagaatggga |
53059517 |
T |
 |
Q |
108 |
aaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaatagtactacttatttgaggaa |
207 |
Q |
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||| | || ||||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |
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T |
53059516 |
aagaacaagagaaagtcgatgatctgtttatgagtgttgaaagtaacgctatccaagtggagagttttgagtagtgaaatagtattatttatttgaggaa |
53059417 |
T |
 |
Q |
208 |
tgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacat |
307 |
Q |
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||||| || |||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||| ||| || | ||||||| |
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T |
53059416 |
tgtctccgaggattgttaggtgttttaatttgagaacagtaagcgtcatacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacat |
53059317 |
T |
 |
Q |
308 |
gttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggt |
361 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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T |
53059316 |
gttaagttcaagggtttcagttcgtctttgtattgctgcaatgataagtttggt |
53059263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 53340729 - 53340869
Alignment:
Q |
223 |
ttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggt |
322 |
Q |
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||||| |||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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T |
53340729 |
ttaggagttttaatttaagaacagtaaacttcctacaagtgaatatgttggaagctaatttcatgtcgaaagtatgaaacaacatgttaagttcaagggt |
53340828 |
T |
 |
Q |
323 |
ttcagttcgtctttgtatcgctgcaatgataagtttggtga |
363 |
Q |
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|||||||||||||||||| |||||||| ||||||| ||||| |
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T |
53340829 |
ttcagttcgtctttgtatggctgcaataataagttgggtga |
53340869 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 356
Target Start/End: Complemental strand, 37418805 - 37418534
Alignment:
Q |
88 |
gcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaat |
187 |
Q |
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||||||||||||||| ||||||||| || |||||||| |||| | ||| |||| |||||| ||||| ||| ||||||||||||||||| ||||||| |
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T |
37418805 |
gcaattcctctagaatgggaaaggaaaagagaaagtcaatgataagcgtacgagtcatgaaatgaacacaatctaagtggagagttttgagccgtgaaat |
37418706 |
T |
 |
Q |
188 |
agtactact---tatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttc |
284 |
Q |
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T |
37418705 |
agtattattagttatctgaggaattttgtcaacgattgtaaggttgtttaatttgagaacagtaagcgtcctacaggtgaatattttggaagctaatttc |
37418606 |
T |
 |
Q |
285 |
aagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagt |
356 |
Q |
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T |
37418605 |
atgtctaaaggataaaaatacatacttagttcaagggtttcagtttgtctttgtattgctgcaataataagt |
37418534 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 53062636 - 53062574
Alignment:
Q |
67 |
atacatttacattatttgtttgcaattcctctagaaggggaaaggataatagaaagtcgatga |
129 |
Q |
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T |
53062636 |
atacatatacattatttgtttgcaattcctctagaatgggaaaggataagagcaagttgatga |
53062574 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 53062540 - 53062465
Alignment:
Q |
196 |
ttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgtt |
271 |
Q |
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|||||||||||||||| || | ||||| ||||| |||| ||||||||||| ||| ||||||||||| |||||||| |
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T |
53062540 |
ttatttgaggaatgtcattcatgattgataggccatttattttgagaacagtaagcgtcctacaagtaaatatgtt |
53062465 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 53340696 - 53340729
Alignment:
Q |
264 |
aatatgttggaagctaatttcaagtcgaaagtat |
297 |
Q |
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T |
53340696 |
aatatgttggaagctaatttcatgtcgaaagtat |
53340729 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 31014069 - 31013973
Alignment:
Q |
261 |
gtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtt |
357 |
Q |
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T |
31014069 |
gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcatctttgtattgctgcgataataagtt |
31013973 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 31014226 - 31014159
Alignment:
Q |
83 |
tgtttgcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaat |
150 |
Q |
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||||| |||||||||||||| ||||||||| || ||||||||||||| |||| ||||||||||||||| |
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T |
31014226 |
tgttttcaattcctctagaatgggaaaggacaagagaaagtcgatgatctgtttatgagtgttgaaat |
31014159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 277
Target Start/End: Complemental strand, 6687718 - 6687530
Alignment:
Q |
89 |
caattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaata |
188 |
Q |
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||||||||| |||| ||||||||| || ||||||||||||| |||||| |||| ||||| |||| |||| ||||||||||||||||| || ||||| |
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T |
6687718 |
caattcctcgagaatgggaaaggaaaagagaaagtcgatgatatgtgtacgagtcatgaaacgaacagtatctaagtggagagttttgaggtgtcaaata |
6687619 |
T |
 |
Q |
189 |
gtactacttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagc |
277 |
Q |
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T |
6687618 |
ggattatttatttgaggaatgtcgtgtcggattactaggtcagttaatttgagaacagtaagcgtcctacaagtgaatatcttggaagc |
6687530 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 34036062 - 34036000
Alignment:
Q |
8 |
caaattgggcaagcatttgatcttgtttgctgttttaggaacaaactccctcaaaggatatac |
70 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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T |
34036062 |
caaattgggcaagcatttgatcttgtctgctgtttttggaacaaactccctcaaaggatatac |
34036000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 48828422 - 48828332
Alignment:
Q |
95 |
ctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaa |
185 |
Q |
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|||||| | ||||||||| || ||||||| ||||| |||||||| || ||||| |||| |||||||||| |||||||||||||||||| |
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T |
48828422 |
ctctaggatgggaaaggaaaagagaaagttgatgatgtgtgtatgggttatgaaaagaacattatccaagtgaagagttttgagtagtgaa |
48828332 |
T |
 |
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