View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376-Insertion-7 (Length: 363)

Name: NF4376-Insertion-7
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376-Insertion-7
NF4376-Insertion-7
[»] chr3 (7 HSPs)
chr3 (8-363)||(53068487-53068842)
chr3 (8-361)||(53059263-53059616)
chr3 (223-363)||(53340729-53340869)
chr3 (88-356)||(37418534-37418805)
chr3 (67-129)||(53062574-53062636)
chr3 (196-271)||(53062465-53062540)
chr3 (264-297)||(53340696-53340729)
[»] chr7 (2 HSPs)
chr7 (261-357)||(31013973-31014069)
chr7 (83-150)||(31014159-31014226)
[»] chr2 (1 HSPs)
chr2 (89-277)||(6687530-6687718)
[»] chr4 (1 HSPs)
chr4 (8-70)||(34036000-34036062)
[»] chr1 (1 HSPs)
chr1 (95-185)||(48828332-48828422)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 53068842 - 53068487
Alignment:
Q  8 caaattgggcaagcatttgatcttgtttgctgttttaggaacaaactccctcaaaggatatacatttacattatttgtttgcaattcctctagaagggga 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068842 caaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggatatacatttacattatttgtttgcaattcctctagaagggga 53068743  T
Q  108 aaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaatagtactacttatttgaggaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53068742 aaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacaccatccaagtggagagttttgagtagtgaaatagtactatttatttgaggaa 53068643  T
Q  208 tgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068642 tgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacat 53068543  T
Q  308 gttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtga 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068542 gttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtga 53068487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 53059616 - 53059263
Alignment:
Q  8 caaattgggcaagcatttgatcttgtttgctgttttaggaacaaactccctcaaaggatatacatttacattatttgtttgcaattcctctagaagggga 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||| ||||    
T  53059616 caaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggaaatacctttactttatttgtttgcaattcctccagaatggga 53059517  T
Q  108 aaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaatagtactacttatttgaggaa 207  Q
    ||| | || ||||||||||||| |||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  53059516 aagaacaagagaaagtcgatgatctgtttatgagtgttgaaagtaacgctatccaagtggagagttttgagtagtgaaatagtattatttatttgaggaa 53059417  T
Q  208 tgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacat 307  Q
    |||||  || |||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| ||| |||  || | |||||||    
T  53059416 tgtctccgaggattgttaggtgttttaatttgagaacagtaagcgtcatacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacat 53059317  T
Q  308 gttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggt 361  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53059316 gttaagttcaagggtttcagttcgtctttgtattgctgcaatgataagtttggt 53059263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 53340729 - 53340869
Alignment:
Q  223 ttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggt 322  Q
    ||||| |||||||||| ||||||| ||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53340729 ttaggagttttaatttaagaacagtaaacttcctacaagtgaatatgttggaagctaatttcatgtcgaaagtatgaaacaacatgttaagttcaagggt 53340828  T
Q  323 ttcagttcgtctttgtatcgctgcaatgataagtttggtga 363  Q
    |||||||||||||||||| |||||||| ||||||| |||||    
T  53340829 ttcagttcgtctttgtatggctgcaataataagttgggtga 53340869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 356
Target Start/End: Complemental strand, 37418805 - 37418534
Alignment:
Q  88 gcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaat 187  Q
    ||||||||||||||| ||||||||| || |||||||| ||||   | ||| ||||  |||||| ||||| ||| |||||||||||||||||  |||||||    
T  37418805 gcaattcctctagaatgggaaaggaaaagagaaagtcaatgataagcgtacgagtcatgaaatgaacacaatctaagtggagagttttgagccgtgaaat 37418706  T
Q  188 agtactact---tatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttc 284  Q
    |||| || |   ||| |||||||| |  |  |||||||| |||   |||||||||||||||| ||| |||||||| |||||||| |||||||||||||||    
T  37418705 agtattattagttatctgaggaattttgtcaacgattgtaaggttgtttaatttgagaacagtaagcgtcctacaggtgaatattttggaagctaatttc 37418606  T
Q  285 aagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagt 356  Q
    | ||| |||| || |||  ||||  | |||||||||||||||||| |||||||||| |||||||| ||||||    
T  37418605 atgtctaaaggataaaaatacatacttagttcaagggtttcagtttgtctttgtattgctgcaataataagt 37418534  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 53062636 - 53062574
Alignment:
Q  67 atacatttacattatttgtttgcaattcctctagaaggggaaaggataatagaaagtcgatga 129  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| || |||| |||||    
T  53062636 atacatatacattatttgtttgcaattcctctagaatgggaaaggataagagcaagttgatga 53062574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 53062540 - 53062465
Alignment:
Q  196 ttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgtt 271  Q
    |||||||||||||||| || | ||||| |||||  |||| ||||||||||| ||| ||||||||||| ||||||||    
T  53062540 ttatttgaggaatgtcattcatgattgataggccatttattttgagaacagtaagcgtcctacaagtaaatatgtt 53062465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 53340696 - 53340729
Alignment:
Q  264 aatatgttggaagctaatttcaagtcgaaagtat 297  Q
    |||||||||||||||||||||| |||||||||||    
T  53340696 aatatgttggaagctaatttcatgtcgaaagtat 53340729  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 31014069 - 31013973
Alignment:
Q  261 gtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtt 357  Q
    |||||||| |||||| ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||    
T  31014069 gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcatctttgtattgctgcgataataagtt 31013973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 31014226 - 31014159
Alignment:
Q  83 tgtttgcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaat 150  Q
    ||||| |||||||||||||| ||||||||| || ||||||||||||| |||| |||||||||||||||    
T  31014226 tgttttcaattcctctagaatgggaaaggacaagagaaagtcgatgatctgtttatgagtgttgaaat 31014159  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 277
Target Start/End: Complemental strand, 6687718 - 6687530
Alignment:
Q  89 caattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaata 188  Q
    ||||||||| |||| ||||||||| || |||||||||||||  |||||| ||||  |||||  |||| |||| |||||||||||||||||  || |||||    
T  6687718 caattcctcgagaatgggaaaggaaaagagaaagtcgatgatatgtgtacgagtcatgaaacgaacagtatctaagtggagagttttgaggtgtcaaata 6687619  T
Q  189 gtactacttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagc 277  Q
    | | || |||||||||||||||| |    ||||  ||||    ||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  6687618 ggattatttatttgaggaatgtcgtgtcggattactaggtcagttaatttgagaacagtaagcgtcctacaagtgaatatcttggaagc 6687530  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 34036062 - 34036000
Alignment:
Q  8 caaattgggcaagcatttgatcttgtttgctgttttaggaacaaactccctcaaaggatatac 70  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  34036062 caaattgggcaagcatttgatcttgtctgctgtttttggaacaaactccctcaaaggatatac 34036000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 48828422 - 48828332
Alignment:
Q  95 ctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaa 185  Q
    |||||| | ||||||||| || ||||||| |||||  |||||||| ||  |||||  |||| |||||||||| ||||||||||||||||||    
T  48828422 ctctaggatgggaaaggaaaagagaaagttgatgatgtgtgtatgggttatgaaaagaacattatccaagtgaagagttttgagtagtgaa 48828332  T

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