View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4376_high_1 (Length: 595)
Name: NF4376_high_1
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 46456812 - 46456374
Alignment:
| Q |
17 |
aaaaatgacttcatgaaaacttaatctcatctatacaattatatgatgaaacctctatctctatgtataatgtcatgtgtgaatccgtacaatatattat |
116 |
Q |
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| T |
46456812 |
aaaaatgacttcatgaaaacttaatctcatctatacaattatatgatgaaacctctatctctatgtataatgtcatgtgtgaatccgtacaatatattat |
46456713 |
T |
|
| Q |
117 |
atat--ggttgatattatcaattcttacactatactgtaatacaacaacaacaacaaaaaagaattggtaaatcataattttaaaacattgtttatgaat |
214 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46456712 |
atatatggttgatattatcaattcttacactataatgtaatacaacaacaacaacaaaaaagaattggtaaatcataattttaaaacattgtttatgaat |
46456613 |
T |
|
| Q |
215 |
acatcttcattttgctctttcaattattgaagccaattcaaaatatttcagcatacaaataaagatcttgtcgcgtcatcatgcctcaactttgagacta |
314 |
Q |
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| T |
46456612 |
acatcttcattttgctctttcaattattgaagccaattcaaaatatttcagaatataaataaagatcttgtcgcgtcatcatgcctcaactttgagacta |
46456513 |
T |
|
| Q |
315 |
tgatctaataaaggtggaagtaagttatcggccttgtttaaatttagtaaccagcaatgattggtggaggaggtgaagcatatgaagagccaaagtgagg |
414 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46456512 |
tgatctaataaaggtggaagtaagttatgggccttgtttaaatttagtaaccagcaatgattggtggaggaggtgaagcatatgaagagccaaagtgagg |
46456413 |
T |
|
| Q |
415 |
gggtaaaatgatatcatcttctggaggtggtgcattaac |
453 |
Q |
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| T |
46456412 |
gggtaaaatgatatcatcttctggaggtggtgcattaac |
46456374 |
T |
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