View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_high_1 (Length: 595)

Name: NF4376_high_1
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_high_1
NF4376_high_1
[»] chr3 (1 HSPs)
chr3 (17-453)||(46456374-46456812)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 46456812 - 46456374
Alignment:
17 aaaaatgacttcatgaaaacttaatctcatctatacaattatatgatgaaacctctatctctatgtataatgtcatgtgtgaatccgtacaatatattat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46456812 aaaaatgacttcatgaaaacttaatctcatctatacaattatatgatgaaacctctatctctatgtataatgtcatgtgtgaatccgtacaatatattat 46456713  T
117 atat--ggttgatattatcaattcttacactatactgtaatacaacaacaacaacaaaaaagaattggtaaatcataattttaaaacattgtttatgaat 214  Q
    ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46456712 atatatggttgatattatcaattcttacactataatgtaatacaacaacaacaacaaaaaagaattggtaaatcataattttaaaacattgtttatgaat 46456613  T
215 acatcttcattttgctctttcaattattgaagccaattcaaaatatttcagcatacaaataaagatcttgtcgcgtcatcatgcctcaactttgagacta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
46456612 acatcttcattttgctctttcaattattgaagccaattcaaaatatttcagaatataaataaagatcttgtcgcgtcatcatgcctcaactttgagacta 46456513  T
315 tgatctaataaaggtggaagtaagttatcggccttgtttaaatttagtaaccagcaatgattggtggaggaggtgaagcatatgaagagccaaagtgagg 414  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46456512 tgatctaataaaggtggaagtaagttatgggccttgtttaaatttagtaaccagcaatgattggtggaggaggtgaagcatatgaagagccaaagtgagg 46456413  T
415 gggtaaaatgatatcatcttctggaggtggtgcattaac 453  Q
    |||||||||||||||||||||||||||||||||||||||    
46456412 gggtaaaatgatatcatcttctggaggtggtgcattaac 46456374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University