View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_high_2 (Length: 494)

Name: NF4376_high_2
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_high_2
NF4376_high_2
[»] chr3 (28 HSPs)
chr3 (300-485)||(21113800-21113985)
chr3 (47-182)||(44687454-44687587)
chr3 (48-182)||(33304964-33305096)
chr3 (75-182)||(5136521-5136628)
chr3 (124-182)||(43476126-43476184)
chr3 (78-182)||(5138301-5138405)
chr3 (126-182)||(43478912-43478968)
chr3 (119-182)||(1388179-1388242)
chr3 (111-182)||(48250936-48251007)
chr3 (124-182)||(16484536-16484594)
chr3 (111-180)||(55385074-55385143)
chr3 (111-182)||(13743172-13743243)
chr3 (124-182)||(50216934-50216992)
chr3 (78-182)||(13742684-13742788)
chr3 (111-182)||(16647214-16647285)
chr3 (124-182)||(47070403-47070461)
chr3 (48-103)||(3350017-3350072)
chr3 (111-182)||(46993238-46993309)
chr3 (229-278)||(33516828-33516878)
chr3 (124-182)||(46989482-46989540)
chr3 (48-122)||(54203496-54203570)
chr3 (125-182)||(600625-600682)
chr3 (137-182)||(41137653-41137698)
chr3 (139-182)||(42166504-42166547)
chr3 (46-127)||(3349481-3349563)
chr3 (136-182)||(47074202-47074248)
chr3 (137-182)||(36817614-36817659)
chr3 (137-182)||(49217046-49217091)
[»] chr1 (31 HSPs)
chr1 (46-182)||(46320455-46320591)
chr1 (52-182)||(26944414-26944544)
chr1 (48-182)||(253281-253415)
chr1 (50-182)||(20114540-20114672)
chr1 (46-182)||(32160667-32160803)
chr1 (75-182)||(32161323-32161430)
chr1 (46-182)||(33206005-33206141)
chr1 (48-182)||(15354562-15354696)
chr1 (98-182)||(253029-253113)
chr1 (84-182)||(46319685-46319783)
chr1 (111-182)||(471130-471201)
chr1 (111-182)||(51271658-51271729)
chr1 (124-182)||(44596796-44596854)
chr1 (46-182)||(15354119-15354253)
chr1 (126-182)||(50117895-50117951)
chr1 (124-182)||(44598986-44599044)
chr1 (98-182)||(4031544-4031628)
chr1 (126-182)||(29765611-29765667)
chr1 (111-182)||(46886454-46886525)
chr1 (46-127)||(52427495-52427576)
chr1 (75-182)||(94345-94454)
chr1 (111-182)||(29438087-29438158)
chr1 (125-182)||(27487717-27487774)
chr1 (229-281)||(43669777-43669830)
chr1 (111-182)||(21144672-21144742)
chr1 (124-182)||(9711731-9711789)
chr1 (140-182)||(16281693-16281735)
chr1 (229-278)||(46900275-46900325)
chr1 (137-182)||(23913792-23913837)
chr1 (226-261)||(2845410-2845446)
chr1 (138-182)||(49874943-49874987)
[»] chr8 (25 HSPs)
chr8 (46-182)||(7577590-7577726)
chr8 (46-182)||(27704532-27704668)
chr8 (46-182)||(7577051-7577187)
chr8 (46-182)||(27703996-27704132)
chr8 (124-182)||(44052306-44052364)
chr8 (127-182)||(43262360-43262415)
chr8 (124-182)||(39604399-39604457)
chr8 (124-182)||(41250151-41250209)
chr8 (125-182)||(39939296-39939353)
chr8 (127-182)||(39601639-39601694)
chr8 (124-182)||(34366847-34366905)
chr8 (127-182)||(34234518-34234573)
chr8 (46-180)||(37577268-37577402)
chr8 (125-180)||(204752-204805)
chr8 (125-180)||(319589-319642)
chr8 (139-182)||(28694513-28694556)
chr8 (46-121)||(37577732-37577807)
chr8 (127-182)||(44050750-44050805)
chr8 (229-278)||(41740966-41741016)
chr8 (141-182)||(10749770-10749811)
chr8 (137-182)||(20546788-20546833)
chr8 (139-180)||(20549327-20549368)
chr8 (137-182)||(31957769-31957814)
chr8 (126-182)||(545870-545926)
chr8 (138-182)||(26451421-26451465)
[»] chr5 (22 HSPs)
chr5 (46-182)||(2532021-2532157)
chr5 (78-182)||(35777049-35777153)
chr5 (46-182)||(2532503-2532639)
chr5 (99-182)||(9784205-9784288)
chr5 (111-182)||(7762311-7762381)
chr5 (127-182)||(13568158-13568213)
chr5 (124-182)||(7757260-7757318)
chr5 (46-103)||(18848014-18848071)
chr5 (138-182)||(11699260-11699304)
chr5 (126-182)||(38407134-38407190)
chr5 (111-182)||(34124002-34124073)
chr5 (111-180)||(1397417-1397486)
chr5 (231-278)||(39948957-39949005)
chr5 (127-182)||(25877557-25877612)
chr5 (125-180)||(30887441-30887496)
chr5 (127-182)||(43094659-43094714)
chr5 (123-160)||(11345965-11346002)
chr5 (137-182)||(25897172-25897217)
chr5 (52-121)||(29413284-29413353)
chr5 (111-180)||(34122461-34122530)
chr5 (137-182)||(39743241-39743286)
chr5 (47-95)||(9070396-9070444)
[»] chr7 (22 HSPs)
chr7 (46-182)||(36185558-36185694)
chr7 (78-182)||(40323665-40323769)
chr7 (124-182)||(46738737-46738795)
chr7 (115-182)||(40323203-40323270)
chr7 (108-182)||(48194637-48194711)
chr7 (46-127)||(35200762-35200844)
chr7 (124-182)||(47741715-47741773)
chr7 (98-182)||(36185125-36185208)
chr7 (124-182)||(48829898-48829956)
chr7 (126-182)||(46740575-46740631)
chr7 (229-278)||(12642467-12642517)
chr7 (229-278)||(42709352-42709402)
chr7 (137-182)||(29593421-29593466)
chr7 (124-175)||(34139839-34139890)
chr7 (124-182)||(40587609-40587667)
chr7 (229-278)||(43259177-43259227)
chr7 (124-182)||(43686928-43686986)
chr7 (229-278)||(43701885-43701935)
chr7 (121-182)||(5537801-5537862)
chr7 (46-95)||(46089005-46089054)
chr7 (138-182)||(17834423-17834467)
chr7 (48-87)||(42684199-42684239)
[»] chr6 (19 HSPs)
chr6 (46-182)||(11687894-11688030)
chr6 (78-182)||(11687394-11687498)
chr6 (124-182)||(14012454-14012512)
chr6 (127-182)||(28362817-28362872)
chr6 (78-182)||(29076354-29076461)
chr6 (78-182)||(29109887-29109994)
chr6 (78-182)||(29111327-29111434)
chr6 (124-182)||(11840330-11840388)
chr6 (125-168)||(3502718-3502761)
chr6 (111-182)||(29061231-29061302)
chr6 (111-182)||(29065675-29065746)
chr6 (111-182)||(29074688-29074759)
chr6 (111-182)||(29079452-29079523)
chr6 (111-182)||(29107261-29107332)
chr6 (124-182)||(117914-117972)
chr6 (229-278)||(20797191-20797241)
chr6 (126-184)||(29068341-29068399)
chr6 (126-184)||(29083588-29083646)
chr6 (46-90)||(25987165-25987209)
[»] chr2 (17 HSPs)
chr2 (46-182)||(17688221-17688357)
chr2 (46-182)||(28137792-28137928)
chr2 (46-182)||(28138287-28138423)
chr2 (98-182)||(39377636-39377720)
chr2 (78-182)||(39378348-39378452)
chr2 (46-182)||(17688756-17688896)
chr2 (111-182)||(43870188-43870259)
chr2 (111-182)||(7190018-7190088)
chr2 (125-182)||(3943272-3943329)
chr2 (111-182)||(23346716-23346786)
chr2 (46-127)||(432085-432166)
chr2 (138-183)||(29093927-29093972)
chr2 (75-182)||(23347356-23347465)
chr2 (48-127)||(43978122-43978201)
chr2 (137-182)||(1149407-1149452)
chr2 (124-182)||(29090544-29090602)
chr2 (126-182)||(3940873-3940929)
[»] chr4 (19 HSPs)
chr4 (124-182)||(44674100-44674158)
chr4 (125-182)||(51492007-51492064)
chr4 (111-182)||(37015866-37015937)
chr4 (126-182)||(37022131-37022187)
chr4 (111-182)||(39588027-39588098)
chr4 (111-182)||(39590635-39590706)
chr4 (126-182)||(50278880-50278936)
chr4 (127-182)||(16983457-16983512)
chr4 (80-182)||(6280792-6280897)
chr4 (139-183)||(16473774-16473818)
chr4 (98-182)||(49889618-49889702)
chr4 (127-182)||(16984244-16984299)
chr4 (111-174)||(37394191-37394254)
chr4 (139-182)||(37880661-37880704)
chr4 (111-182)||(50274695-50274766)
chr4 (111-182)||(56138182-56138253)
chr4 (229-278)||(25107485-25107535)
chr4 (137-182)||(19073732-19073777)
chr4 (138-182)||(28320494-28320538)
[»] scaffold0206 (1 HSPs)
scaffold0206 (136-182)||(13299-13345)
[»] scaffold0184 (2 HSPs)
scaffold0184 (126-182)||(18375-18431)
scaffold0184 (124-182)||(17966-18024)
[»] scaffold0078 (2 HSPs)
scaffold0078 (126-182)||(54413-54469)
scaffold0078 (124-182)||(54820-54878)
[»] scaffold0176 (1 HSPs)
scaffold0176 (124-175)||(764-815)
[»] scaffold0361 (1 HSPs)
scaffold0361 (137-182)||(4493-4538)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 300 - 485
Target Start/End: Original strand, 21113800 - 21113985
Alignment:
Q  300 cttagtaaataagaaacatggcatgcttgacaaagaaataatggcttgcttagtcatttaatgttaatatttaaagtttgtgtttgaacaatgaataaac 399  Q
    ||||||||| ||||||||||||||||||||| |  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21113800 cttagtaaacaagaaacatggcatgcttgacgataaaacaatggcttgcttagtcatttaatgttcatatttaaagtttgtgtttgaacaatgaataaac 21113899  T
Q  400 aacaaagcatacggaaacactgtcatggagtggagcctaatgatgcatttgacagtacaatgaacaatatataaatcaagtataat 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  21113900 aacaaagcatacggaaacactgtcatggagtggagcctaatgatgcatttgacagtgcaatgaacaatatataaatcaaggataat 21113985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 44687454 - 44687587
Alignment:
Q  47 gtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtg 146  Q
    ||||| |||||||| ||||| ||||||   ||||||||||||||  ||| ||||||| | ||| |||||| ||||||||||||||||||||||||||  |    
T  44687454 gtcggtagttaactatcgaaggaacttcaatagttaactgcagccagttctaaacttcggtagttaactgtcgcagaggcaaaaacgtcatttactc--g 44687551  T
Q  147 tggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||||||||||    
T  44687552 tggcacaatcttatgtaatgtgggaacaacaattct 44687587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 33304964 - 33305096
Alignment:
Q  48 tcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgt 147  Q
    |||||||||||||| |||| |||||| ||| |||||||||||| ||||  |||||| | ||| |||||||||||| | |||||||||||||||||||| |    
T  33304964 tcggcagttaactgccgaaggaacttcggttgttaactgcagccggttccaaacttcggtagttaactgccgcagggacaaaaacgtcatttactcgtat 33305063  T
Q  148 ggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||  || |||||||||| |||||||    
T  33305064 ggcacaacctta--tagtgtgggaacagcaattct 33305096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 5136628 - 5136521
Alignment:
Q  75 ggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaaca 174  Q
    |||||||||||||||| ||||  ||| || | ||| |||||| ||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  5136628 ggtagttaactgcagccggttccaaatttcggtagttaactgtcgcaggggcaaaaacgtcatttacttgtgtggcacagtcttatgtaatgtgggaaca 5136529  T
Q  175 acaattct 182  Q
    ||||||||    
T  5136528 acaattct 5136521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 43476184 - 43476126
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43476184 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgagaacaacaattct 43476126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 5138301 - 5138405
Alignment:
Q  78 agttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaaca 177  Q
    ||||||||| ||| ||||  |||||| | ||| |||||| || || |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||    
T  5138301 agttaactgtagctggttccaaacttcggtagttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtcatgtgggaacagca 5138400  T
Q  178 attct 182  Q
    |||||    
T  5138401 attct 5138405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 43478912 - 43478968
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43478912 caaaaacatcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 43478968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 1388179 - 1388242
Alignment:
Q  119 gcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  1388179 gcaggggcaaaaatgtcatttacttgtgtggcacagccttatgtaatgtgggaacaacaattct 1388242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 48250936 - 48251007
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  48250936 taactgccgagggggcaaaaacgtcatttatttatgtggcacaaccttatgtaatgtgggaacaacaattct 48251007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 16484536 - 16484594
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  16484536 ggcaaaaatgtcatttactcgtgtggcacaaccctatgtaatgtgggtacaacaattct 16484594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 55385143 - 55385074
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    |||||||||  | ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  55385143 taactgccgagggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaatt 55385074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 13743172 - 13743243
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| ||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||| | |||||||    
T  13743172 taactgtcgcaggggcaaaaacgtcatttactcgtgagacacaatcttatgtaatgtgggaaaagcaattct 13743243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 50216934 - 50216992
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  50216934 ggcaaaaacgtcaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattct 50216992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 13742788 - 13742684
Alignment:
Q  78 agttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaaca 177  Q
    ||||||||||||| ||||| |||||| | ||| |||||| |||||  | |||||||||||||| |||| ||||| |  ||| ||||||||||||||| ||    
T  13742788 agttaactgcagccggtttcaaacttcggtagttaactgtcgcaggagtaaaaacgtcatttattcgtatggcatagtcttttgtaatgtgggaacagca 13742689  T
Q  178 attct 182  Q
    |||||    
T  13742688 attct 13742684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 16647214 - 16647285
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||||||||  |||||||||| || ||||||||| ||||||||||||||||||||    
T  16647214 taactgccgagggggcaaaaacgtcaagtactcgtgtgccagaaccttatgcaatgtgggaacaacaattct 16647285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 47070461 - 47070403
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||| ||||||||||| ||||  |||||| ||||||||||||||||||||    
T  47070461 ggcaaaaacgtcaattactcgtgtgccacagtcttatgcaatgtgggaacaacaattct 47070403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 3350017 - 3350072
Alignment:
Q  48 tcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactt 103  Q
    ||||||||||||||||||| |||||| |||||||||||||||| | ||| ||||||    
T  3350017 tcggcagttaactgtcgaaggaacttcggtagttaactgcagccgatttcaaactt 3350072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 46993238 - 46993309
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||||||||||||||||| ||||||| ||||||  |||||| ||||| |||||||    
T  46993238 taactgccgagggggcaaaaacgtcatttactcgtatggcacagccttatcaaatgtgtgaacagcaattct 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 33516828 - 33516878
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  33516828 tcacacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 33516878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 46989540 - 46989482
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||||||| || |||||||||||  ||||||  ||||||||||||    
T  46989540 ggcaaaaacgtcatttactcgtatgacacaaccttattaaatgtgtaaacaacaattct 46989482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 54203570 - 54203496
Alignment:
Q  48 tcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcag 122  Q
    |||||||||||||| |||| |||||| || ||||||||||||| ||||  |||||||| ||| ||| ||||||||    
T  54203570 tcggcagttaactgccgaaggaacttcgggagttaactgcagccggttccaaactttggtagttaattgccgcag 54203496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 600625 - 600682
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||||||||| | || |||| |  ||||||||||||||||||||    
T  600625 gcaaaaacgtcatttactcgtgtgccgcagccttctacaatgtgggaacaacaattct 600682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 41137698 - 41137653
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||    
T  41137698 tttactagtgtggcacaaccttatcaaatgtgggaacaacaattct 41137653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 42166504 - 42166547
Alignment:
Q  139 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||||  |||| |||||||    
T  42166504 tactcgtgtggcacaaccttatgtaatgtgtaaacatcaattct 42166547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 3349563 - 3349481
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttt-taaactttgatagctaactgccgcagaggca 127  Q
    |||||||||||||||| ||||  || || |||||||||||||||| |||||  |||||| | ||| || ||||||||||||||    
T  3349563 cgtcggcagttaactgccgaagaaatttcggtagttaactgcagccggtttcaaaacttcggtagttagctgccgcagaggca 3349481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 47074202 - 47074248
Alignment:
Q  136 atttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||| ||| ||||||||| || |||||||||||||    
T  47074202 atttactcgtgtggcagaacattatgtaatatgagaacaacaattct 47074248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 36817614 - 36817659
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  36817614 tttactagtgtggcacaaccttatcacatgtgggaacaacaattct 36817659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 49217091 - 49217046
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| ||||||||||| |||||  ||||||||||||||||||||    
T  49217091 tttactagtgtggcacaatcttatcaaatgtgggaacaacaattct 49217046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 46320455 - 46320591
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| || ||| |||||||||||||||| ||||| |||||| | ||| ||||| |||||| ||||||||||||||||||||||    
T  46320455 cgtcggcagttaactgccgaaggaccttcggtagttaactgcagccggtttcaaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgt 46320554  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||| |||||||    
T  46320555 gtggcacaaccttatgtaatgtgggaacagcaattct 46320591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 26944544 - 26944414
Alignment:
Q  52 cagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggca 151  Q
    |||||||||| |||| |||||| || ||||||||||||| ||||  |||||| ||||| ||||||||| || ||||||||||||||||||||||||||||    
T  26944544 cagttaactgccgaaggaacttcgggagttaactgcagccggttccaaacttcgatagttaactgccgtaggggcaaaaacgtcatttactcgtgtggca 26944445  T
Q  152 caaccttatgtaatgtgggaacaacaattct 182  Q
    || ||||||||||||||||||||||||||||    
T  26944444 cagccttatgtaatgtgggaacaacaattct 26944414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 253281 - 253415
Alignment:
Q  48 tcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgt 147  Q
    |||| |||||||||||||| |||||| |||||||||||||||| ||||  |||||| | ||| ||||| |||||| |||||||| |||||||||||||||    
T  253281 tcggtagttaactgtcgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactaccgcaggggcaaaaatgtcatttactcgtgt 253380  T
Q  148 ggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| ||||| ||||||||||||||||||||||    
T  253381 ggcacagccttacgtaatgtgggaacaacaattct 253415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 20114672 - 20114540
Alignment:
Q  50 ggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtgg 149  Q
    |||| ||||||| |||| |||||| |||||||||||||||| ||||   ||||| | ||| ||||| |||||| ||||||||||||||||||||||||||    
T  20114672 ggcaattaactgccgaaggaacttcggtagttaactgcagccggttcccaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgtgtgg 20114573  T
Q  150 cacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||| ||||||||||||||||||||||||||||    
T  20114572 cacagccttatgtaatgtgggaacaacaattct 20114540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 32160803 - 32160667
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    ||||||||||||||||||||| |||||| || ||||||||||||| ||||  |||||| | ||| |||||||||||| || ||||||| |||||||||||    
T  32160803 cgtcggcagttaactgtcgaaggaacttcggaagttaactgcagccggttccaaacttcggtagttaactgccgcaggggtaaaaacgacatttactcgt 32160704  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| ||||||||||||||||| || |||||||    
T  32160703 gtggcacagccttatgtaatgtgggatcagcaattct 32160667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 32161323 - 32161430
Alignment:
Q  75 ggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaaca 174  Q
    |||||||||||||||| ||||  |||||| | ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32161323 ggtagttaactgcagccggttccaaacttcggtagttaactgccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaaca 32161422  T
Q  175 acaattct 182  Q
    ||||||||    
T  32161423 acaattct 32161430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 33206005 - 33206141
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| ||||  |||||| | ||  |||||||||||| || ||||| |||||||||||||    
T  33206005 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtaattaactgccgcaggggtaaaaatgtcatttactcgt 33206104  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||  ||||||||||||||||||| |||||||    
T  33206105 gtggcacagtcttatgtaatgtgggaacagcaattct 33206141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 15354562 - 15354696
Alignment:
Q  48 tcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgt 147  Q
    |||||||||||||| |||| |||||| |||||||||| ||||| |||| |||||||  |||  ||||||| |||| |  |||||||||||||||||||||    
T  15354562 tcggcagttaactgccgaaggaacttcggtagttaaccgcagccggttctaaacttcaatatttaactgctgcagggataaaaacgtcatttactcgtgt 15354661  T
Q  148 ggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    | ||||||||||||||||||||||||| |||||||    
T  15354662 gacacaaccttatgtaatgtgggaacagcaattct 15354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 253113 - 253029
Alignment:
Q  98 aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| | ||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  253113 aaacttcggtagataactaccgcaggggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaacagcaattct 253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 46319783 - 46319685
Alignment:
Q  84 ctgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||| |||| ||||||| | ||| ||||| ||||||   |||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  46319783 ctgcagccggttctaaacttcggtagttaactaccgcaggaacaaaaacgtcatttactcgtgtggcacagccatatgtaatgtgggaacaacaattct 46319685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 471130 - 471201
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  471130 taactgccgatggggcaaaaacgtcatttacccgcgtggcacaaccttatgtaatgtgggaacaacaattct 471201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 51271658 - 51271729
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  51271658 taactgccgagggggcaaaaacgtcatttacccgtgtggcacaaccttatgtaatttgggaacaacaattct 51271729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 44596854 - 44596796
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  44596854 ggcaaaaacgtcatttactcgtgtggcacagtcttatgtaatgtgggaacaacaattct 44596796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 15354253 - 15354119
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| ||| || |||||||||||| ||| ||||  |||||| ||||| |||||  || ||  | ||||| |||||||||||||    
T  15354253 cgtcggcagttaactgccgaaggaatttcggtagttaactgtagccggttccaaacttcgatagttaactatcgtaggagtaaaaatgtcatttactcgt 15354154  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||  |||||||||||||||||||||| | |||||||    
T  15354153 gtg--acaaccttatgtaatgtgggaatagcaattct 15354119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 50117895 - 50117951
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50117895 caaaaatgtcatttactcgtgtggcacaaccttatgtaatgtgggaacagcaattct 50117951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 44598986 - 44599044
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  44598986 ggcaaaaatgtcatttactcgtgtggcacaaccctatgtaatgtgggtacaacaattct 44599044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 4031544 - 4031628
Alignment:
Q  98 aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| ||||| ||||||| |||| | ||||||  ||||||||| |||||||| ||||||||||||| ||||||||||||||||    
T  4031544 aaacttcgatagttaactgctgcagggacaaaaatatcatttacttgtgtggcataaccttatgtaatatgggaacaacaattct 4031628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 29765611 - 29765667
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  29765611 caaaaacgtcatttattcgtgtggtacaaccttatgcaatgtgggaacaacaattct 29765667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 46886454 - 46886525
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||||||||||||||||||| ||||||||||||  ||||||  ||||||||||||    
T  46886454 taactgccgagggggcaaaaacgtcatttactcgtgtagcacaaccttatcaaatgtgtaaacaacaattct 46886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 52427495 - 52427576
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggca 127  Q
    ||||||||||||||||||||| |||||| | |||||||||||||| ||||  |||||| | ||| ||||||  |||||||||    
T  52427495 cgtcggcagttaactgtcgaaggaacttcgatagttaactgcagccggttccaaacttcggtagttaactgtagcagaggca 52427576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 94454 - 94345
Alignment:
Q  75 ggtagttaactgcagcaggtttt---aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtggga 171  Q
    |||||||||||||||| || |||   |||||| |  || ||||||||| || |||||||||||||||||||| ||||||||| ||||||  ||||||  |    
T  94454 ggtagttaactgcagctggatttctaaaacttcggcagttaactgccgaag-ggcaaaaacgtcatttactcatgtggcacagccttatcaaatgtgtaa 94356  T
Q  172 acaacaattct 182  Q
    |||||||||||    
T  94355 acaacaattct 94345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 29438087 - 29438158
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||||||| | ||| ||||||| |||||||||||  ||||||||||||||||||||    
T  29438087 taactgccgagggggcaaaaacgtaaattattcgtgtgccacaaccttatcaaatgtgggaacaacaattct 29438158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 27487717 - 27487774
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||| | ||||||||||| |||||||||||  |||||||||||| |||||||    
T  27487717 gcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacatcaattct 27487774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 43669777 - 43669830
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccattga 281  Q
    ||||||||||||||||||||| ||||| | |||||||||||| |||||||||||    
T  43669777 tcacacacaaaatcacaacagtagcacgtcctgccgctgcagaggatccattga 43669830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 21144672 - 21144742
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| ||| |||||||||| | ||| ||||||| || ||||||||  ||||||||||||||||||||    
T  21144672 taactgccg-agaagcaaaaacgtaaattagtcgtgtgccagaaccttatcaaatgtgggaacaacaattct 21144742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 9711731 - 9711789
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||| |||  |||||| ||||| |||||||||||  ||||||||||||||||||||    
T  9711731 ggcaaaatcgtattttactagtgtgccacaaccttatcaaatgtgggaacaacaattct 9711789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 16281735 - 16281693
Alignment:
Q  140 actcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||| |||| ||||||||||||||||||||||||| |||||||    
T  16281735 actcatgtgccacaaccttatgtaatgtgggaacatcaattct 16281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 46900275 - 46900325
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||| |  ||||||||||| ||||||||    
T  46900275 tcacacacaaaatcacaacagcagcacgtcttgccgctgcagaggatccat 46900325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 23913837 - 23913792
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  23913837 tttactagtgtggcacaaccttatcacatgtgggaacaacaattct 23913792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 2845410 - 2845446
Alignment:
Q  226 tcatcacacacaaaa-tcacaacagcagcactgctgc 261  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2845410 tcatcacacacaaaaatcacaacagcagcactgctgc 2845446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 49874987 - 49874943
Alignment:
Q  138 ttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||    
T  49874987 ttactcgtgtgacacaaccttatgcaatgtgtcaacaacaattct 49874943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 7577590 - 7577726
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| ||||| |||||| | ||| ||| |||||||| || |||||||||||||||||||    
T  7577590 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggtttcaaacttcggtagttaattgccgcaggggtaaaaacgtcatttactcgt 7577689  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  7577690 gtggcacagccttatgtaatgtgggaacagcaattct 7577726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 27704532 - 27704668
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| |||||||||||||||| ||||| |||||| | ||| ||||||| |||| || |||||||||||||| ||||    
T  27704532 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggtttcaaacttcggtagttaactgctgcaggggtaaaaacgtcatttattcgt 27704631  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  27704632 gtggcacagccttatgtaatgtgggaacagcaattct 27704668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 7577187 - 7577051
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| || |||||| |||||| ||||  |||||| | ||| |||||| ||||| || ||||||||||||||||| |    
T  7577187 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcggtagttaactgtcgcaggggtaaaaacgtcatttactcat 7577088  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  7577087 gtggcacagccttatgtaatgtgggaacagcaattct 7577051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 27704132 - 27703996
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| || |||||| |||||| ||||  |||||| | ||| |||||||||||| || |||||||||||||| | ||    
T  27704132 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcggtagttaactgccgcaggggtaaaaacgtcatttatttgt 27704033  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  27704032 gtggcacagccttatgtaatgtgggaacagcaattct 27703996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 44052306 - 44052364
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44052306 ggcaaaaacgtcatttactcgtgtgccacaaccttatgtaatgtgggaacaacaattct 44052364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 43262415 - 43262360
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  43262415 aaaaacgtcatttactcgtgtggcacagccttatgtaatgtgagaacaacaattct 43262360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 39604399 - 39604457
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  39604399 ggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgtggggacaacaattct 39604457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 41250151 - 41250209
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  41250151 ggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaattct 41250209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 39939296 - 39939353
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  39939296 gcaaaaacgtcatttactcgtgtgacacatccttatgtaatgtgggaacaataattct 39939353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 39601694 - 39601639
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  39601694 aaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaatagcaattct 39601639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 34366905 - 34366847
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  34366905 ggcaaaaaggtcttttactcgtgtggcacagccttatgtaatgtgggaacatcaattct 34366847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 34234573 - 34234518
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  34234573 aaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaaacaacaattct 34234518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 37577402 - 37577268
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||| | ||||  |||||  ||||||| ||| ||  ||||  |||||| | ||| ||||| | |||||||||||| || |||||| ||||    
T  37577402 cgtcggcagttaacggccgaagaaacttcagtagttacctgtagtcggttccaaacttaggtagttaactactgcagaggcaaaatcggcatttattcgt 37577303  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    ||| |||| |||| ||||||||| ||||| |||||    
T  37577302 gtgacacagccttgtgtaatgtgagaacagcaatt 37577268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 204752 - 204805
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    |||||||||| |||||||  ||||||||||||||||||||||| |||| |||||||    
T  204752 gcaaaaacgttatttact--tgtggcacaaccttatgtaatgttggaataacaatt 204805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 319589 - 319642
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    |||||||||| |||||||  ||||||||||||||||||||||| |||| |||||||    
T  319589 gcaaaaacgttatttact--tgtggcacaaccttatgtaatgttggaataacaatt 319642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 28694513 - 28694556
Alignment:
Q  139 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||||  |||| |||||||    
T  28694513 tactcgtgtggcacaaccttatgtaatgtgttaacagcaattct 28694556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 37577732 - 37577807
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgca 121  Q
    |||||||||||||| |||||| |||||| ||||||||| |||||| ||||  |||||| | ||| |||||| ||||    
T  37577732 cgtcggcagttaaccgtcgaaggaacttcggtagttaattgcagccggttcaaaacttcggtagttaactgtcgca 37577807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 44050805 - 44050750
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| ||| ||||||||||| |||| ||||||| |||||||||||| |||||||    
T  44050805 aaaaacatcaattactcgtgtgccacagccttatgcaatgtgggaacagcaattct 44050750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 41741016 - 41740966
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||| | ||||| |||||| ||||||||    
T  41741016 tcacacacaaaatcacaacagcagcacgtcctgccactgcagaggatccat 41740966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 10749770 - 10749811
Alignment:
Q  141 ctcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||  |||| |||||||    
T  10749770 ctcgtgtggcacaaccttatgtaatgtgtaaacagcaattct 10749811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 20546833 - 20546788
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  20546833 tttactagtgtggcacaaccttatcacatgtgggaacaacaattct 20546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 20549327 - 20549368
Alignment:
Q  139 tactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  20549327 tactcgtgtggcacaaccttatgtaaagtgtaaacaacaatt 20549368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 31957814 - 31957769
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  31957814 tttactagtgtggcacaaccttatcacatgtgggaacaacaattct 31957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 545926 - 545870
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||| | ||||||||| ||||||  ||||||  ||||||||||||    
T  545926 caaaaacgtcatttacacatgtggcacagccttatcaaatgtgtaaacaacaattct 545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 26451465 - 26451421
Alignment:
Q  138 ttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||    
T  26451465 ttactcgtgtgccacaaccttatcaaatgtgggaagaacaattct 26451421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 2532157 - 2532021
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| ||| || ||||||||| |||||| ||||  |||||| ||||| ||||| ||||||  |||||||||||||||||| ||    
T  2532157 cgtcggcagttaactgccgaaggaatttcggtagttaattgcagccggttccaaacttcgatagttaactaccgcaggagcaaaaacgtcatttacttgt 2532058  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2532057 gtggcacagccttatgtaatgtgggaacaacaattct 2532021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 35777049 - 35777153
Alignment:
Q  78 agttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaaca 177  Q
    ||||||||||||| ||||  |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  35777049 agttaactgcagccggttccaaacttcggtagttaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaacgtgggaacatca 35777148  T
Q  178 attct 182  Q
    |||||    
T  35777149 attct 35777153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 2532503 - 2532639
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| ||||  ||||| || ||||||||||||| ||||  |||||| | ||| ||| | |||||| || |||||||||||||||||||    
T  2532503 cgtcggcagttaactgccgaagaaacttcgggagttaactgcagccggttccaaacttcggtagttaattaccgcaggggtaaaaacgtcatttactcgt 2532602  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  2532603 gtggcacagccttatgtaatgtgggaacagcaattct 2532639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 9784205 - 9784288
Alignment:
Q  99 aactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||| ||||| |||||| ||||| ||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  9784205 aacttcgatagttaactgtcgcaggggcaaaaacatcatttattcgtgtgacacaactttatgtaatgtgggaacaacaattct 9784288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 7762311 - 7762381
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  7762311 taactgccg-aggggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgtgggaacagcaattct 7762381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 13568158 - 13568213
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  13568158 aaaaacgtcatttactcgtatggcacagccttatgtaatgtgggaacaacaattct 13568213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 7757318 - 7757260
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||    
T  7757318 ggcaaaaacgtcatttactcgtgtggcatagtcttatgtaatgtgggaacagcaattct 7757260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 18848014 - 18848071
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactt 103  Q
    ||||||||||||||||||||| |||||| |||||||||||||||  ||||||||||||    
T  18848014 cgtcggcagttaactgtcgaaggaacttcggtagttaactgcagtcggttttaaactt 18848071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 11699304 - 11699260
Alignment:
Q  138 ttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  11699304 ttactcgtgtggcacaaccttatgtaatgtgagaacatcaattct 11699260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 38407190 - 38407134
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| | ||||||||||| |||||||||||  ||||||||||||||||||||    
T  38407190 caaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattct 38407134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 34124002 - 34124073
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||| |||  |||||| |||||||||||||||||  ||||||||||||||||||||    
T  34124002 taactgccgagggggcaaaatcgtattttactggtgtggcacaaccttattaaatgtgggaacaacaattct 34124073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 1397417 - 1397486
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    |||||||||  | |||||||| || | ||||||||||| |||||||||||  ||||||||||||||||||    
T  1397417 taactgccgagggggcaaaaatgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaatt 1397486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 39949005 - 39948957
Alignment:
Q  231 acacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  39949005 acacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 39948957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 25877612 - 25877557
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||  |||||||||||| |||||||||||| ||||||  ||||||||||||    
T  25877612 aaaaacgtattttactcgtgtgacacaaccttatgcaatgtgtcaacaacaattct 25877557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 30887441 - 30887496
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    |||||||||| | ||||||||||| |||||| ||||  ||||||||||||||||||    
T  30887441 gcaaaaacgtaaattactcgtgtgccacaacgttatcaaatgtgggaacaacaatt 30887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 43094659 - 43094714
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||| ||||||||  ||||||  |||| |||||||    
T  43094659 aaaaacgtcatttactcgtgtggcataaccttatcaaatgtgtaaacagcaattct 43094714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 11346002 - 11345965
Alignment:
Q  123 aggcaaaaacgtcatttactcgtgtggcacaaccttat 160  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  11346002 aggcaaaaacgtcatttacttgtgtggcacagccttat 11345965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 25897172 - 25897217
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  25897172 tttactagtgtggcacaaccttatcacatgtgggaacaacaattct 25897217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 29413284 - 29413353
Alignment:
Q  52 cagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgca 121  Q
    ||||||| || |||| |||||| ||||||||||||||||   ||| |||||| ||||| |||||||||||    
T  29413284 cagttaattgccgaaggaacttcggtagttaactgcagccaatttcaaacttcgatagttaactgccgca 29413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 34122530 - 34122461
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaatt 180  Q
    ||||||||| || ||||||| |||  ||||||  ||||||||||||||||  ||| ||||||||||||||    
T  34122530 taactgccgaaggggcaaaatcgtattttactaatgtggcacaaccttatcaaatatgggaacaacaatt 34122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 39743241 - 39743286
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||| ||||||  ||||||||||||||||||||    
T  39743241 tttactagtgtggcacagccttatcaaatgtgggaacaacaattct 39743286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 9070396 - 9070444
Alignment:
Q  47 gtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggtt 95  Q
    ||||||||||||||| |||| |||||| || ||||||||||||| ||||    
T  9070396 gtcggcagttaactgccgaaggaacttcggaagttaactgcagctggtt 9070444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 36185558 - 36185694
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| || ||| |||||||||||||||| ||||  ||| || | |||  ||||||||||| ||||||||||||||||||||||    
T  36185558 cgtcggcagttaactgccgaaggagcttcggtagttaactgcagccggttccaaatttcggtagtgaactgccgcaggggcaaaaacgtcatttactcgt 36185657  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| ||||||||||||||| |||| |||||||    
T  36185658 gtggcacagccttatgtaatgtggaaacagcaattct 36185694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 40323665 - 40323769
Alignment:
Q  78 agttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaaca 177  Q
    ||||||||||||| ||||  |||||| | ||| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||    
T  40323665 agttaactgcagccggttccaaacttcggtagttaactgccgcaggggcaaaaacgtcatttacttgtgtggcacagccttatgtaatgtgggaacagca 40323764  T
Q  178 attct 182  Q
    |||||    
T  40323765 attct 40323769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 46738795 - 46738737
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46738795 ggcaaaaacgtcatttgctcgtgtggcacaaccttatgtaatgtgggaacaacaattct 46738737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 40323270 - 40323203
Alignment:
Q  115 tgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  40323270 tgccgcaggggcaaaaatgtcatttactcatgtggcacagccttatgtaatgtgggaacaacaattct 40323203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 48194637 - 48194711
Alignment:
Q  108 agctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| ||| || ||||||||||||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  48194637 agctaactaccgaaggggcaaaaacgtcatttactcgtgtatcacagccttatgtaatgtgggaacagcaattct 48194711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 35200762 - 35200844
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttt-taaactttgatagctaactgccgcagaggca 127  Q
    |||||||||||||||||||||  ||||| |||||||||||||||| |||||  |||||| | |||||||||||||||| ||||    
T  35200762 cgtcggcagttaactgtcgaagaaacttcggtagttaactgcagccggtttcaaaacttcggtagctaactgccgcaggggca 35200844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 47741773 - 47741715
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||    
T  47741773 ggcaaaaacgtattttactagtgtggcacaaccttatgtaatgtgagaacaacaattct 47741715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 36185208 - 36185125
Alignment:
Q  98 aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| | ||| |||||||||||| || |||||  |||||||||||||||||||||||||||| |||||||||| | |||||||    
T  36185208 aaacttcggtagttaactgccgcag-ggtaaaaatatcatttactcgtgtggcacaaccttatggaatgtgggaaaagcaattct 36185125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 48829956 - 48829898
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| | ||||||||||| |||||||||||  ||||||||||||||||||||    
T  48829956 ggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattct 48829898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 46740575 - 46740631
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||| |||| |||| ||||||  ||||||||||||||||||||    
T  46740575 caaaaacgtcatttactcttgtgtcacagccttatcaaatgtgggaacaacaattct 46740631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 12642517 - 12642467
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  12642517 tcacacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 12642467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 42709352 - 42709402
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  42709352 tcacacacaaaatcacaacagcagcacgtcctgccgctgcagaggatccat 42709402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 29593421 - 29593466
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||    
T  29593421 tttactagtgtggcacaaccttatcaaatgtgggaacaacaattct 29593466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 34139890 - 34139839
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaa 175  Q
    ||||||||||| | ||||||||||| |||||||||||  |||||||||||||    
T  34139890 ggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaa 34139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 40587667 - 40587609
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| | ||||||||||| |||| ||||||  ||||||||| ||||||||||    
T  40587667 ggcaaaaacgtaaattactcgtgtgtcacatccttatcaaatgtgggatcaacaattct 40587609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 43259227 - 43259177
Alignment:
Q  229 tcacacacaaaatcacaacagcagca-ctgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||  |||||| ||||||| ||||||||    
T  43259227 tcacacacaaaatcacaacagcagcatgtgctgctgctgcagaggatccat 43259177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 43686928 - 43686986
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||| |||  |||||| |||||||||||||||||  |||||||||||| |||||||    
T  43686928 ggcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacagcaattct 43686986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 43701935 - 43701885
Alignment:
Q  229 tcacacacaaaatcacaacagcagca-ctgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||  |||||| ||||||| ||||||||    
T  43701935 tcacacacaaaatcacaacagcagcatgtgctgctgctgcagaggatccat 43701885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 5537862 - 5537801
Alignment:
Q  121 agaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||| ||||||||| | ||| ||||||| |||| ||||||  ||||||||||||||||||||    
T  5537862 agagacaaaaacgtaaattattcgtgtgccacagccttatcaaatgtgggaacaacaattct 5537801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 46089054 - 46089005
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggtt 95  Q
    |||||||||||||||| |||| |||||| || ||||||||||||| ||||    
T  46089054 cgtcggcagttaactgccgaaggaacttcgggagttaactgcagccggtt 46089005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 17834467 - 17834423
Alignment:
Q  138 ttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||| ||||||||||||||  |||| |||||||    
T  17834467 ttactcgtgtggcacagccttatgtaatgtgtaaacatcaattct 17834423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 42684239 - 42684199
Alignment:
Q  48 tcggcagttaactgtcga-aagaactttggtagttaactgc 87  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  42684239 tcggcagttaactgtcgagaaaaactttggtagttaactgc 42684199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 11687894 - 11688030
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| || |||||| |||||| | ||  |||||| | ||| |||||||||||| || |||||||||||||||||||    
T  11687894 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccgattccaaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgt 11687993  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  11687994 gtggcacagccttatgtaatgtgggaacagcaattct 11688030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 11687498 - 11687394
Alignment:
Q  78 agttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaaca 177  Q
    ||||||||||||| |||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||| ||    
T  11687498 agttaactgcagccggttttaaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgtgtggcacaactttatataatgtgggaacagca 11687399  T
Q  178 attct 182  Q
    |||||    
T  11687398 attct 11687394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 14012454 - 14012512
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  14012454 ggcaaaaacgtcatttactcgtgtggcacagccttattaaatgtgggaacaacaattct 14012512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 28362817 - 28362872
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  28362817 aaaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaatagcaattct 28362872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 29076354 - 29076461
Alignment:
Q  78 agttaactgcagcaggtttt---aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaaca 174  Q
    ||||||||||||| || |||   |||||| || || ||||||||| || ||||||||||||| ||||| ||||| |||| ||||||| || |||||||||    
T  29076354 agttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtgggaaca 29076453  T
Q  175 acaattct 182  Q
    ||||||||    
T  29076454 acaattct 29076461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 29109887 - 29109994
Alignment:
Q  78 agttaactgcagcaggtttt---aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaaca 174  Q
    ||||||||||||| || |||   |||||| || || ||||||||| || ||||||||||||| ||||| ||||| |||| ||||||| || |||||||||    
T  29109887 agttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtgggaaca 29109986  T
Q  175 acaattct 182  Q
    ||||||||    
T  29109987 acaattct 29109994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 29111327 - 29111434
Alignment:
Q  78 agttaactgcagcaggtttt---aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaaca 174  Q
    ||||||||||||| || |||   |||||| || || ||||||||| || ||||||||||||| ||||| ||||| |||| ||||||| || |||||||||    
T  29111327 agttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacgtgggaaca 29111426  T
Q  175 acaattct 182  Q
    ||||||||    
T  29111427 acaattct 29111434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 11840330 - 11840388
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| ||| ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  11840330 ggcaaaaacatcaattactcgtgtgtcacagccttatgcaatgtgggaacaacaattct 11840388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 3502718 - 3502761
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtg 168  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  3502718 gcaaaaacgtcatttactcgtgtgacacaaccttatgaaatgtg 3502761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 29061302 - 29061231
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||| || | ||||||||||| |||| |||||||||||||||||||| |||||||    
T  29061302 taactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatgtaatgtgggaacaccaattct 29061231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 29065746 - 29065675
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||| || | ||||||||||| |||| |||||| |||||||||||||||||||||    
T  29065746 taactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattct 29065675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 29074759 - 29074688
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||| || | ||||||||||| |||| |||||| |||||||||||||||||||||    
T  29074759 taactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattct 29074688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 29079523 - 29079452
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||| || | ||||||||||| |||| |||||| |||||||||||||||||||||    
T  29079523 taactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattct 29079452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 29107332 - 29107261
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||| || | ||||||||||| |||| |||||| |||||||||||||||||||||    
T  29107332 taactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattct 29107261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 117914 - 117972
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| | ||||||||||| |||||||||||  |||||||||||| |||||||    
T  117914 ggcaaaaacgtaaattactcgtgtgacacaaccttatcaaatgtgggaacatcaattct 117972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 20797191 - 20797241
Alignment:
Q  229 tcacacacaaaatcacaacagcagca-ctgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||  |||||| ||||||| ||||||||    
T  20797191 tcacacacaaaatcacaacagcagcatgtgctgctgctgcagaggatccat 20797241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29068341 - 29068399
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattctag 184  Q
    ||||||||||| |||||| |||| |||||| ||||| || ||||||||| |||||||||    
T  29068341 caaaaacgtcaattactcatgtgccacaacattatgcaacgtgggaacagcaattctag 29068399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29083588 - 29083646
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattctag 184  Q
    ||||||||||| |||||| |||| |||||| ||||| || ||||||||| |||||||||    
T  29083588 caaaaacgtcaattactcatgtgccacaacattatgcaacgtgggaacagcaattctag 29083646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 25987209 - 25987165
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagc 90  Q
    |||||||||| |||||||||| |||||| | ||||||||||||||    
T  25987209 cgtcggcagtaaactgtcgaaggaacttcgatagttaactgcagc 25987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 17688357 - 17688221
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| ||||  ||||| |||||||||||||||| ||||  ||||||   ||| ||||| ||||||  |||||||||||||||| ||||    
T  17688357 cgtcggcagttaactgccgaagaaacttcggtagttaactgcagccggttccaaacttcagtagttaactaccgcaggagcaaaaacgtcatttattcgt 17688258  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| |||||||||||||||||||| |||||||    
T  17688257 gtggcacagccttatgtaatgtgggaacagcaattct 17688221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 28137928 - 28137792
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| || ||||||||||| |  |||| ||||||   ||| ||||||| | |  ||||||||||||||||||||||    
T  28137928 cgtcggcagttaactgccgaaggaacttcgggagttaactgcaaccagtttcaaacttcagtagttaactgctgtaagggcaaaaacgtcatttactcgt 28137829  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  28137828 gtggcacaaccttatataatgtgggaacagcaattct 28137792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 28138287 - 28138423
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgt 145  Q
    |||||||||||||||| |||| |||||| || ||||||||||||| ||||  |||| | | ||| |||||| ||||| | ||||||||||||||||||||    
T  28138287 cgtcggcagttaactgccgaaggaacttcgggagttaactgcagccggttccaaacatcggtagttaactgtcgcagggacaaaaacgtcatttactcgt 28138386  T
Q  146 gtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| | |||| ||||||||||||||| |||||||    
T  28138387 gtggcatagccttttgtaatgtgggaacagcaattct 28138423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 39377720 - 39377636
Alignment:
Q  98 aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  39377720 aaacttcgatagttaactaccgcagaggcaaaaacgtcatttactcgtgtggcacagccttatgtaatgtggaaacagcaattct 39377636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 39378348 - 39378452
Alignment:
Q  78 agttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaaca 177  Q
    ||||||||||||| | ||  |||||| | ||| ||||| ||||| ||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  39378348 agttaactgcagccgattccaaacttcggtagttaactaccgcaaaggcaaaaacgtcatttactcgtgtggcacggccatatgtaatgtgggaacaaca 39378447  T
Q  178 attct 182  Q
    |||||    
T  39378448 attct 39378452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 17688756 - 17688896
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaac----tttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggcaaaaacgtcatttac 141  Q
    ||||||||||||||||||||| |||     || ||||||||||||| ||  |||  |||||| | ||| ||||| |||||| ||||||||||||||||||    
T  17688756 cgtcggcagttaactgtcgaaggaaggaatttcggtagttaactgccgccagttccaaacttcggtagttaactaccgcaggggcaaaaacgtcatttac 17688855  T
Q  142 tcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
     ||||||||| | |||||||| |||||||||||||||||||    
T  17688856 acgtgtggcatagccttatgtgatgtgggaacaacaattct 17688896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 43870188 - 43870259
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43870188 taactgccgatggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacatcaattct 43870259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 7190018 - 7190088
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  7190018 taactgccg-aggggcaaaaacgtaatttactcgtgtggcacaaccttatgtaatgtgggaacatcaattct 7190088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 3943272 - 3943329
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  3943272 gcaaaaacgtcatttactcgtgtggcatagccttatctaatgtgggaacaacaattct 3943329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 23346786 - 23346716
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  23346786 taactgccgaag-ggcaaaaacgtcatttactcgtgtggcacaaccttatcaaatgtgtaaacaacaattct 23346716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 432166 - 432085
Alignment:
Q  46 cgtcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggca 127  Q
    |||||||||||||||||||||  ||||||| ||||||| |||| | |||||||||||| | ||| |||||| ||||| ||||    
T  432166 cgtcggcagttaactgtcgaagaaactttgatagttaattgcaaccggttttaaacttcggtagttaactgtcgcaggggca 432085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 29093927 - 29093972
Alignment:
Q  138 ttactcgtgtggcacaaccttatgtaatgtgggaacaacaattcta 183  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  29093927 ttactcgtgtgccacagccttatgtaatgtgggaacaacaattcta 29093972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 23347356 - 23347465
Alignment:
Q  75 ggtagttaactgcagcaggtttt---aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtggga 171  Q
    |||||||||||||||| || |||   |||||| |  || ||||||||| || |||||||||||||||||||||||||||||| ||||||  ||||||  |    
T  23347356 ggtagttaactgcagccggatttctaaaacttcggcagttaactgccgaag-ggcaaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaa 23347454  T
Q  172 acaacaattct 182  Q
    ||| |||||||    
T  23347455 acagcaattct 23347465  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 43978122 - 43978201
Alignment:
Q  48 tcggcagttaactgtcgaaagaactttggtagttaactgcagcaggttttaaactttgatagctaactgccgcagaggca 127  Q
    ||||||||||||||||||| |||||| | |||||||||||||| | ||| |||||| | ||| ||||| |||||| ||||    
T  43978122 tcggcagttaactgtcgaaggaacttcgatagttaactgcagccgatttcaaacttcggtagttaactaccgcaggggca 43978201  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 1149452 - 1149407
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||    
T  1149452 tttactagtgtggcacaaccttatcaaatgtgggaacaacaattct 1149407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 29090602 - 29090544
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||| || | ||||| |||||||||||||||||  ||||| ||||||||||||||    
T  29090602 ggcaaaaaagtaaattactagtgtggcacaaccttatcaaatgtaggaacaacaattct 29090544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 3940929 - 3940873
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||| |||||| |||||||||  ||||||| |||||| || |||||||    
T  3940929 caaaaacgtcattcactcgtatggcacaacgctatgtaacgtgggatcatcaattct 3940873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 44674158 - 44674100
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44674158 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 44674100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 51492064 - 51492007
Alignment:
Q  125 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51492064 gcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 51492007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 37015937 - 37015866
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  37015937 taactgccgagggggcaaaaatgtcatttactcatgtggcacatccttatgtaatgtgggaacaacaattct 37015866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 37022131 - 37022187
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||    
T  37022131 caaaaacgtcatttacttgtgtggtacaaccttatataatgtgggaagaacaattct 37022187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 39588098 - 39588027
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||    
T  39588098 taactgccgagggggcaaaaacgtcatttactcgtgtgacacatccttatgcaatatgagaacaacaattct 39588027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 39590635 - 39590706
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||||| |||||||||||||||||||| |||||| |||||||| |||| |||||||    
T  39590635 taactgccgagggggcaaaaacatcatttactcgtgtggcacagccttatataatgtggaaacagcaattct 39590706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 50278880 - 50278936
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||| | ||||||||||| |||||||||||  ||||||||||||||||||||    
T  50278880 caaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattct 50278936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 16983512 - 16983457
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  16983512 aaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaaacaacaattct 16983457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 6280897 - 6280792
Alignment:
Q  80 ttaactgcagcaggttttaaa---ctttgatagctaactgccgcagagg-caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaa 175  Q
    ||||||||||| |||||| ||   |||||| || ||||||||| ||||| ||||||||| | ||||||||||| | |||||||||| ||||||  |||||    
T  6280897 ttaactgcagccggtttttaaattctttgacagttaactgccg-agagggcaaaaacgtaaattactcgtgtgccccaaccttatgcaatgtgtcaacaa 6280799  T
Q  176 caattct 182  Q
    |||||||    
T  6280798 caattct 6280792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 16473774 - 16473818
Alignment:
Q  139 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattcta 183  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||    
T  16473774 tactcgtgtggcacaaccttatgtaatgtgtaaacagcaattcta 16473818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 49889702 - 49889618
Alignment:
Q  98 aaactttgatagctaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| || || |||||||||  ||| ||||||  ||| |||||||| || |||||||||||| ||||||||||| ||||||||    
T  49889702 aaacttcgacagttaactgccgaggagacaaaaatatcaattactcgtatgccacaaccttatgcaatgtgggaacgacaattct 49889618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 16984244 - 16984299
Alignment:
Q  127 aaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||||||||||||||| ||||||  ||||||  |||| |||||||    
T  16984244 aaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaaacagcaattct 16984299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 37394254 - 37394191
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaaca 174  Q
    ||||||||| |||||||||| |||  |||||| ||||||||||||| |||  ||||||||||||    
T  37394254 taactgccgaagaggcaaaatcgtattttactagtgtggcacaaccatatcaaatgtgggaaca 37394191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 37880661 - 37880704
Alignment:
Q  139 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||    
T  37880661 tactcgtgtggcacagccttatgtaatgtgtaaacaacaattct 37880704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 50274766 - 50274695
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||  | ||||||||||| | ||||||||||| |||| || |||  ||||||||||||||||||||    
T  50274766 taactgccgagggggcaaaaacgtaaattactcgtgtgccacagccctatcaaatgtgggaacaacaattct 50274695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 56138253 - 56138182
Alignment:
Q  111 taactgccgcagaggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| || || ||||||| |||  |||||| |||||||||||||||||  |||||||||||| |||||||    
T  56138253 taactgtcgaaggggcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacagcaattct 56138182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 25107535 - 25107485
Alignment:
Q  229 tcacacacaaaatcacaacagcagcac-tgctgccgctgcaggggatccat 278  Q
    ||||||||||||||||||||||||||| | ||||||||| || ||||||||    
T  25107535 tcacacacaaaatcacaacagcagcacgtcctgccgctggagaggatccat 25107485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 19073732 - 19073777
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  19073732 tttactggtgtggcacaaccttatcacatgtgggaacaacaattct 19073777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 28320538 - 28320494
Alignment:
Q  138 ttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||    
T  28320538 ttactcgtgtgacacaaccttatgcaatgtgtcaacaacaattct 28320494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 13299 - 13345
Alignment:
Q  136 atttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||||    
T  13299 atttactcgtgtggcacagccttatgtaatgtggaaacagcaattct 13345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 18375 - 18431
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| ||||| ||||| |||| ||||||| || |||||||||||||||||    
T  18375 caaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaacaacaattct 18431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 18024 - 17966
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| | ||||||||||| |||||| ||||  |||||||||||| |||||||    
T  18024 ggcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaattct 17966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 54469 - 54413
Alignment:
Q  126 caaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| ||||| ||||| |||| ||||||| || |||||||||||||||||    
T  54469 caaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaacaacaattct 54413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 54820 - 54878
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    ||||||||||| | ||||||||||| |||||| ||||  |||||||||||| |||||||    
T  54820 ggcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaattct 54878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 815 - 764
Alignment:
Q  124 ggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgtgggaacaa 175  Q
    ||||||||||| | ||||||||||| |||||||||||  |||||||||||||    
T  815 ggcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaa 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 4493 - 4538
Alignment:
Q  137 tttactcgtgtggcacaaccttatgtaatgtgggaacaacaattct 182  Q
    |||||| |||||||||||||||||   |||||||||||||||||||    
T  4493 tttactagtgtggcacaaccttatcacatgtgggaacaacaattct 4538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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