View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_high_3 (Length: 462)

Name: NF4376_high_3
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_high_3
NF4376_high_3
[»] chr2 (1 HSPs)
chr2 (43-397)||(38748706-38749061)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 43 - 397
Target Start/End: Original strand, 38748706 - 38749061
Alignment:
43 gtgacgatgttgtgaatggaaagaaggggtgagagagttattatatagggaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38748706 gtgacgatgttgtgaatggaaagaaggggtgagagagttattatatagggaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgg 38748805  T
143 gaataagggatggtaagggg-ggtatgtggctaggtagcatttgagagtaacatgcaaaagagggtatgtggcagtttgttaattcattggggcctaatg 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
38748806 gaataagggatggtaagggggggtatgtggctaggtagcatttgagagtaacatgcaaaagagggtatgtggcagtttgttaattcattgggacctaatg 38748905  T
242 ttttggctatgtgtaattcgattacaagctctcaattcaacaatatccgtgcctttttggttttgggtgacatgaaaattctagatcacgatatatagaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
38748906 ttttggctatgtgtaattcgattacaagctctcaattcaacaatatccgtgcccttttggttttgggtgacatgaaaattctagatcacgatatatagaa 38749005  T
342 ttttatgtatagaatacacaaagaggtgtccatgcaatgtactttgatacattgca 397  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
38749006 ttttatgtatagaatacacaaagaggtgtccatgaaatgtactttgatacattgca 38749061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University