View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4376_high_6 (Length: 302)
Name: NF4376_high_6
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376_high_6 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 31646855 - 31646567
Alignment:
| Q |
14 |
aaaataaaaatgataataaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31646855 |
aaaataaaaatgataataaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatc |
31646756 |
T |
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| Q |
114 |
tttggcttaattgaaagtccnnnnnnnccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcac |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31646755 |
tttggcttaattgaaagtcctttttttccacaatccgaaagctcattccaccaaggcacagagctaaaatttccctcagcaaatggaaacactgtctcac |
31646656 |
T |
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| Q |
214 |
ccccttcttcaacatttgaactgtatcatcaaaaccaaaaagtgcacaccaatatcaacttcatatatatattcatgatcatgaatata |
302 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31646655 |
ccccttcttcaacatttgaattgtatcatcaaaaccaaaaagtgcacaccaatatcaacttcatatatatattcatgatcatgaatata |
31646567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 31638134 - 31637879
Alignment:
| Q |
31 |
aaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaag |
130 |
Q |
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||||||| ||||||||||| | ||||| |||||||| ||| |||| |||||||| | ||||||||||| |||| |||||||||||||||||||||||| |
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| T |
31638134 |
aaaagagttactaaccatgaacactcaatggatctacggttgcatcaggcttcatgccccagaaaagtatagcattacccatctttggcttaattgaaag |
31638035 |
T |
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| Q |
131 |
tccnnnnnnnccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacattt |
230 |
Q |
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||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |
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| T |
31638034 |
tcccttttttccacaatcagaaagctcattccaccaaggcacagagctaaaatttcccttagcagatggaaacactgtctcacccccttcttcaacatct |
31637935 |
T |
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| Q |
231 |
gaactgtatcatcaaaa-ccaaaaa--gtgcacaccaatatcaacttcatatatat |
283 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
31637934 |
gaactgtatcatcaaaatacaagaagtgtgcacaccaatatcaacttcatatatat |
31637879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 40 - 272
Target Start/End: Complemental strand, 31630803 - 31630570
Alignment:
| Q |
40 |
actaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn |
139 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31630803 |
actaaccatgcaaactcgatggatctaaagttccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttt |
31630704 |
T |
|
| Q |
140 |
nccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtat |
239 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| ||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
31630703 |
tccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtat |
31630604 |
T |
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| Q |
240 |
catcaa-aaccaaaaagtgcacaccaatatcaac |
272 |
Q |
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||||| ||||||||| |||||||||||||| |
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| T |
31630603 |
aatcaatttacaaaaagtggacaccaatatcaac |
31630570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 59 - 279
Target Start/End: Complemental strand, 31652321 - 31652098
Alignment:
| Q |
59 |
tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctca |
158 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
31652321 |
tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaatcggaaagctca |
31652222 |
T |
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| Q |
159 |
ttccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaaa--ac-caaaaag |
255 |
Q |
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|||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||| |||||||||||||| || || |||||| |
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| T |
31652221 |
ttccaccaaggcacagagctaaaatttcccttggcatttggaaacaccgtctcacccccttcttcgacatctgaactgtatcatcgaattacaaaaaaag |
31652122 |
T |
|
| Q |
256 |
tgcacaccaatatcaacttcatat |
279 |
Q |
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|| || |||||||||||||||||| |
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| T |
31652121 |
tgaactccaatatcaacttcatat |
31652098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 31657125 - 31656904
Alignment:
| Q |
59 |
tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctca |
158 |
Q |
| |
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||||||||||||| |||| |||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
31657125 |
tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgacagtcctccttttccacaatcggaaagctca |
31657026 |
T |
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| Q |
159 |
ttccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatc-----aaaaccaaaa |
253 |
Q |
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|||||||||| |||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||||||| ||| | || |||| |
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| T |
31657025 |
ttccaccaaggcacagagctaaaatttcccttggcatttgggaacaccgtctcacccccttcttcaacatccgaactgtattatcgaattacaaaaaaaa |
31656926 |
T |
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| Q |
254 |
agtgcacaccaatatcaacttc |
275 |
Q |
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|||| ||||||||||||||||| |
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| T |
31656925 |
agtgaacaccaatatcaacttc |
31656904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 9104719 - 9104934
Alignment:
| Q |
32 |
aaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagt |
131 |
Q |
| |
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||||||| |||||||||||| || || |||||||||| |||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
9104719 |
aaagagaaactaaccatgcaagcttgatgcatctaaagttgcatccggcttcatgctccagaaaagtaaagcatcacctctctttggcttaattgaaagt |
9104818 |
T |
|
| Q |
132 |
ccnnnnnnnccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttg |
231 |
Q |
| |
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|| |||||||| ||||||||||| |||| | |||| || ||||| |||| |||| || |||||||||||||||||||||||||||| || |
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| T |
9104819 |
ccttttttcccacaatcagaaagctcattataccacggcacattactgaaattccccttagcagcagggaacactgtctcacccccttcttcaacatctg |
9104918 |
T |
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| Q |
232 |
aactgtatcatcaaaa |
247 |
Q |
| |
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|||||||||| |||| |
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| T |
9104919 |
tactgtatcattaaaa |
9104934 |
T |
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