View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_high_6 (Length: 302)

Name: NF4376_high_6
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_high_6
NF4376_high_6
[»] chr8 (5 HSPs)
chr8 (14-302)||(31646567-31646855)
chr8 (31-283)||(31637879-31638134)
chr8 (40-272)||(31630570-31630803)
chr8 (59-279)||(31652098-31652321)
chr8 (59-275)||(31656904-31657125)
[»] chr5 (1 HSPs)
chr5 (32-247)||(9104719-9104934)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 31646855 - 31646567
Alignment:
14 aaaataaaaatgataataaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31646855 aaaataaaaatgataataaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatc 31646756  T
114 tttggcttaattgaaagtccnnnnnnnccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcac 213  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
31646755 tttggcttaattgaaagtcctttttttccacaatccgaaagctcattccaccaaggcacagagctaaaatttccctcagcaaatggaaacactgtctcac 31646656  T
214 ccccttcttcaacatttgaactgtatcatcaaaaccaaaaagtgcacaccaatatcaacttcatatatatattcatgatcatgaatata 302  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31646655 ccccttcttcaacatttgaattgtatcatcaaaaccaaaaagtgcacaccaatatcaacttcatatatatattcatgatcatgaatata 31646567  T

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Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 31638134 - 31637879
Alignment:
31 aaaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaag 130  Q
    ||||||| ||||||||||| | ||||| ||||||||  ||| |||| |||||||| | |||||||||||  |||| ||||||||||||||||||||||||    
31638134 aaaagagttactaaccatgaacactcaatggatctacggttgcatcaggcttcatgccccagaaaagtatagcattacccatctttggcttaattgaaag 31638035  T
131 tccnnnnnnnccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacattt 230  Q
    |||       |||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |    
31638034 tcccttttttccacaatcagaaagctcattccaccaaggcacagagctaaaatttcccttagcagatggaaacactgtctcacccccttcttcaacatct 31637935  T
231 gaactgtatcatcaaaa-ccaaaaa--gtgcacaccaatatcaacttcatatatat 283  Q
    |||||||||||||||||  ||| ||  |||||||||||||||||||||||||||||    
31637934 gaactgtatcatcaaaatacaagaagtgtgcacaccaatatcaacttcatatatat 31637879  T

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Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 40 - 272
Target Start/End: Complemental strand, 31630803 - 31630570
Alignment:
40 actaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnn 139  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||          
31630803 actaaccatgcaaactcgatggatctaaagttccatctggcttcatgctccaaaaaagtaatgcatcacccatctttggcttaattgaaagtcctttttt 31630704  T
140 nccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtat 239  Q
     |||||||||||||||||||||||||||| ||||||||||| ||| ||||  |||  ||| |||||||||||||||||||||||||||| ||||||||||    
31630703 tccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacactgtctcacccccttcttcaacatctgaactgtat 31630604  T
240 catcaa-aaccaaaaagtgcacaccaatatcaac 272  Q
     |||||    ||||||||| ||||||||||||||    
31630603 aatcaatttacaaaaagtggacaccaatatcaac 31630570  T

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Target: chr8; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 59 - 279
Target Start/End: Complemental strand, 31652321 - 31652098
Alignment:
59 tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctca 158  Q
    ||||||||||||| |||| |||||||| |||||||||||||  |||| ||||||||||||||||||||| |||||       |||||||| |||||||||    
31652321 tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgatagtcctccttttccacaatcggaaagctca 31652222  T
159 ttccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatcaaa--ac-caaaaag 255  Q
    |||||||||| ||||||||||||||||||||  |||  ||||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||  ||||||    
31652221 ttccaccaaggcacagagctaaaatttcccttggcatttggaaacaccgtctcacccccttcttcgacatctgaactgtatcatcgaattacaaaaaaag 31652122  T
256 tgcacaccaatatcaacttcatat 279  Q
    || || ||||||||||||||||||    
31652121 tgaactccaatatcaacttcatat 31652098  T

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Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 31657125 - 31656904
Alignment:
59 tggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagtccnnnnnnnccacaatccgaaagctca 158  Q
    ||||||||||||| |||| |||||||| |||||||||||||  |||| ||||||||||||||||||||| |||||       |||||||| |||||||||    
31657125 tggatctaaagttgcatcaggcttcatgctccagaaaagtatagcattacccatctttggcttaattgacagtcctccttttccacaatcggaaagctca 31657026  T
159 ttccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttgaactgtatcatc-----aaaaccaaaa 253  Q
    |||||||||| ||||||||||||||||||||  |||  ||| ||||| ||||||||||||||||||||||  ||||||||| |||     | ||  ||||    
31657025 ttccaccaaggcacagagctaaaatttcccttggcatttgggaacaccgtctcacccccttcttcaacatccgaactgtattatcgaattacaaaaaaaa 31656926  T
254 agtgcacaccaatatcaacttc 275  Q
    |||| |||||||||||||||||    
31656925 agtgaacaccaatatcaacttc 31656904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 9104719 - 9104934
Alignment:
32 aaagagatactaaccatgcatactcagtggatctaaagttccatctggcttcatactccagaaaagtaatgcatcacccatctttggcttaattgaaagt 131  Q
    ||||||| ||||||||||||  ||   || |||||||||| |||| |||||||| |||||||||||||| ||||||||  ||||||||||||||||||||    
9104719 aaagagaaactaaccatgcaagcttgatgcatctaaagttgcatccggcttcatgctccagaaaagtaaagcatcacctctctttggcttaattgaaagt 9104818  T
132 ccnnnnnnnccacaatccgaaagctcattccaccaagacacagagctaaaatttccctcagcaaatggaaacactgtctcacccccttcttcaacatttg 231  Q
    ||       |||||||| |||||||||||  |||| | ||||   || ||||| |||| ||||   || |||||||||||||||||||||||||||| ||    
9104819 ccttttttcccacaatcagaaagctcattataccacggcacattactgaaattccccttagcagcagggaacactgtctcacccccttcttcaacatctg 9104918  T
232 aactgtatcatcaaaa 247  Q
     |||||||||| ||||    
9104919 tactgtatcattaaaa 9104934  T

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