View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_low_10 (Length: 236)

Name: NF4376_low_10
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_low_10
NF4376_low_10
[»] chr3 (5 HSPs)
chr3 (1-223)||(53068836-53069058)
chr3 (22-223)||(53059610-53059811)
chr3 (22-223)||(37418915-37419116)
chr3 (137-223)||(53062686-53062772)
chr3 (22-68)||(53062779-53062825)
[»] chr2 (1 HSPs)
chr2 (22-223)||(6687826-6688027)
[»] chr4 (1 HSPs)
chr4 (79-223)||(34036056-34036200)
[»] chr7 (1 HSPs)
chr7 (98-187)||(31014240-31014328)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53069058 - 53068836
Alignment:
1 attaagatctaaatttccaacaatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatatt 100  Q
    ||||||| |||||||| |||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
53069058 attaagacctaaattttcaatgatggggacttggatataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatatt 53068959  T
101 gtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
53068958 gtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgctctggaaagcaggaagagaggaataggtttgttatcag 53068859  T
201 aaagcttggatgtcaccaaattg 223  Q
    |||||||||||||||||||||||    
53068858 aaagcttggatgtcaccaaattg 53068836  T

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Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 53059811 - 53059610
Alignment:
22 aatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatattgtgatttgttttgtaaaatga 121  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| ||||||||||||||||    
53059811 aatggggacttggaaatagtgggtccatgtctgcatgaattacaaagacgggaaaacattagaaaggaatcatgatattgtgaattgttttgtaaaatga 53059712  T
122 aacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaat 221  Q
    |||||||| ||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
53059711 aacaaactcttacttaccagagttatactgagactccgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggctgtcaccaaat 53059612  T
222 tg 223  Q
    ||    
53059611 tg 53059610  T

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Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 37419116 - 37418915
Alignment:
22 aatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatattgtgatttgttttgtaaaatga 121  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||| ||  || |||||||| | || || ||||||||||||||||||||||||||    
37419116 aatggggacctggacatagtgggtccatgtctgcatgaattacaaagacaagtaaacattagaaatctatgatcatattgtgatttgttttgtaaaatga 37419017  T
122 aacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaat 221  Q
    ||||||||| |||| ||||||||||||||||||||   ||| |||||||||| ||||||||||||||||| | ||||| ||||||||| |||||||||||    
37419016 aacaaactagtactgaccatctttatactgagactgactgcactggaaagcaagaagagaggaataggttcgctatcataaagcttggctgtcaccaaat 37418917  T
222 tg 223  Q
    ||    
37418916 tg 37418915  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 53062772 - 53062686
Alignment:
137 accatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaattg 223  Q
    |||| |||||||||||||||  ||||| ||||||||| ||||| |||||||| |||| ||||||||||||||| |||||| ||||||    
53062772 accagctttatactgagactctgtgccttggaaagcaagaagaaaggaatagctttgctatcagaaagcttggctgtcactaaattg 53062686  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 53062825 - 53062779
Alignment:
22 aatggggacttggacataatggggccatgtctgcatgaattacaaag 68  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||    
53062825 aatggggacttcatcatagtggggccatgtctgcatgaattacaaag 53062779  T

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Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 6688027 - 6687826
Alignment:
22 aatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatattgtgatttgttttgtaaaatga 121  Q
    ||||||||| |||||| |  || |||||||||||||||||||||||||| |||  | ||||||||| |||||| |||||||||||||||||||||||| |    
6688027 aatggggacatggacacagcggtgccatgtctgcatgaattacaaagacaagaagacattagaaagtaatcatcatattgtgatttgttttgtaaaatca 6687928  T
122 aacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaat 221  Q
    |||||||| |||||||||||||||| |||||||||  ||||| ||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||||    
6687927 aacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaataggttcgttatcacaaagcttggctgtcaccaaat 6687828  T
222 tg 223  Q
    ||    
6687827 tg 6687826  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 34036200 - 34036056
Alignment:
79 attagaaagcaatcatgatattgtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaag 178  Q
    |||||||| |||| || ||||||| |||||||||| ||||| ||||||||| |||  ||||| |||||||||||| || |||||| ||||||||| |||     
34036200 attagaaatcaataatcatattgtaatttgttttgcaaaatcaaacaaactcttaaataccagctttatactgagccttcgtgccttggaaagcaagaaa 34036101  T
179 agaggaataggtttgttatcagaaagcttggatgtcaccaaattg 223  Q
    |||||||||| |||| ||  ||||||||||| |||||||||||||    
34036100 agaggaatagctttgctactagaaagcttggctgtcaccaaattg 34036056  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 31014328 - 31014240
Alignment:
98 attgtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaata 187  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||  ||||| ||||||||| ||| |||||||||    
31014328 attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcct-tgtgccttggaaagcaagaaaagaggaata 31014240  T

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