View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4376_low_10 (Length: 236)
Name: NF4376_low_10
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53069058 - 53068836
Alignment:
| Q |
1 |
attaagatctaaatttccaacaatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatatt |
100 |
Q |
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||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53069058 |
attaagacctaaattttcaatgatggggacttggatataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatatt |
53068959 |
T |
|
| Q |
101 |
gtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53068958 |
gtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgctctggaaagcaggaagagaggaataggtttgttatcag |
53068859 |
T |
|
| Q |
201 |
aaagcttggatgtcaccaaattg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
53068858 |
aaagcttggatgtcaccaaattg |
53068836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 53059811 - 53059610
Alignment:
| Q |
22 |
aatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatattgtgatttgttttgtaaaatga |
121 |
Q |
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|||||||||||||| ||| |||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
53059811 |
aatggggacttggaaatagtgggtccatgtctgcatgaattacaaagacgggaaaacattagaaaggaatcatgatattgtgaattgttttgtaaaatga |
53059712 |
T |
|
| Q |
122 |
aacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaat |
221 |
Q |
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| T |
53059711 |
aacaaactcttacttaccagagttatactgagactccgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggctgtcaccaaat |
53059612 |
T |
|
| Q |
222 |
tg |
223 |
Q |
| |
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|| |
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| T |
53059611 |
tg |
53059610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 37419116 - 37418915
Alignment:
| Q |
22 |
aatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatattgtgatttgttttgtaaaatga |
121 |
Q |
| |
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||||||||| |||||||| |||| ||||||||||||||||||||||||| || || |||||||| | || || |||||||||||||||||||||||||| |
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| T |
37419116 |
aatggggacctggacatagtgggtccatgtctgcatgaattacaaagacaagtaaacattagaaatctatgatcatattgtgatttgttttgtaaaatga |
37419017 |
T |
|
| Q |
122 |
aacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaat |
221 |
Q |
| |
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||||||||| |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||| ||||||||| ||||||||||| |
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| T |
37419016 |
aacaaactagtactgaccatctttatactgagactgactgcactggaaagcaagaagagaggaataggttcgctatcataaagcttggctgtcaccaaat |
37418917 |
T |
|
| Q |
222 |
tg |
223 |
Q |
| |
|
|| |
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|
| T |
37418916 |
tg |
37418915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 53062772 - 53062686
Alignment:
| Q |
137 |
accatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaattg |
223 |
Q |
| |
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|||| ||||||||||||||| ||||| ||||||||| ||||| |||||||| |||| ||||||||||||||| |||||| |||||| |
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| T |
53062772 |
accagctttatactgagactctgtgccttggaaagcaagaagaaaggaatagctttgctatcagaaagcttggctgtcactaaattg |
53062686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 53062825 - 53062779
Alignment:
| Q |
22 |
aatggggacttggacataatggggccatgtctgcatgaattacaaag |
68 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
53062825 |
aatggggacttcatcatagtggggccatgtctgcatgaattacaaag |
53062779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 6688027 - 6687826
Alignment:
| Q |
22 |
aatggggacttggacataatggggccatgtctgcatgaattacaaagacgagagaaaattagaaagcaatcatgatattgtgatttgttttgtaaaatga |
121 |
Q |
| |
|
||||||||| |||||| | || |||||||||||||||||||||||||| ||| | ||||||||| |||||| |||||||||||||||||||||||| | |
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| T |
6688027 |
aatggggacatggacacagcggtgccatgtctgcatgaattacaaagacaagaagacattagaaagtaatcatcatattgtgatttgttttgtaaaatca |
6687928 |
T |
|
| Q |
122 |
aacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaataggtttgttatcagaaagcttggatgtcaccaaat |
221 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||| |
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| T |
6687927 |
aacaaactcttacttaccatctttagactgagactgagtgccttggaaagcaagaagagaggaataggttcgttatcacaaagcttggctgtcaccaaat |
6687828 |
T |
|
| Q |
222 |
tg |
223 |
Q |
| |
|
|| |
|
|
| T |
6687827 |
tg |
6687826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 34036200 - 34036056
Alignment:
| Q |
79 |
attagaaagcaatcatgatattgtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaag |
178 |
Q |
| |
|
|||||||| |||| || ||||||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||| || |||||| ||||||||| ||| |
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| T |
34036200 |
attagaaatcaataatcatattgtaatttgttttgcaaaatcaaacaaactcttaaataccagctttatactgagccttcgtgccttggaaagcaagaaa |
34036101 |
T |
|
| Q |
179 |
agaggaataggtttgttatcagaaagcttggatgtcaccaaattg |
223 |
Q |
| |
|
|||||||||| |||| || ||||||||||| ||||||||||||| |
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| T |
34036100 |
agaggaatagctttgctactagaaagcttggctgtcaccaaattg |
34036056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 31014328 - 31014240
Alignment:
| Q |
98 |
attgtgatttgttttgtaaaatgaaacaaactattacttaccatctttatactgagactacgtgccctggaaagcaggaagagaggaata |
187 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| || ||||| ||||||||| ||| ||||||||| |
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| T |
31014328 |
attgtgatttgttttgtaaaatcaaacaaactcttacttaccagctttatactgagcct-tgtgccttggaaagcaagaaaagaggaata |
31014240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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