View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4376_low_3 (Length: 462)
Name: NF4376_low_3
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 43 - 397
Target Start/End: Original strand, 38748706 - 38749061
Alignment:
| Q |
43 |
gtgacgatgttgtgaatggaaagaaggggtgagagagttattatatagggaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748706 |
gtgacgatgttgtgaatggaaagaaggggtgagagagttattatatagggaggagagagtgtgagttgagaaagagaaaataaaatggtgacaaggatgg |
38748805 |
T |
|
| Q |
143 |
gaataagggatggtaagggg-ggtatgtggctaggtagcatttgagagtaacatgcaaaagagggtatgtggcagtttgttaattcattggggcctaatg |
241 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38748806 |
gaataagggatggtaagggggggtatgtggctaggtagcatttgagagtaacatgcaaaagagggtatgtggcagtttgttaattcattgggacctaatg |
38748905 |
T |
|
| Q |
242 |
ttttggctatgtgtaattcgattacaagctctcaattcaacaatatccgtgcctttttggttttgggtgacatgaaaattctagatcacgatatatagaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748906 |
ttttggctatgtgtaattcgattacaagctctcaattcaacaatatccgtgcccttttggttttgggtgacatgaaaattctagatcacgatatatagaa |
38749005 |
T |
|
| Q |
342 |
ttttatgtatagaatacacaaagaggtgtccatgcaatgtactttgatacattgca |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38749006 |
ttttatgtatagaatacacaaagaggtgtccatgaaatgtactttgatacattgca |
38749061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University