View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4376_low_5 (Length: 402)
Name: NF4376_low_5
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4376_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 22122154 - 22122314
Alignment:
| Q |
10 |
attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac |
109 |
Q |
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| T |
22122154 |
attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac |
22122253 |
T |
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| Q |
110 |
attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
170 |
Q |
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| T |
22122254 |
attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
22122314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 40512319 - 40512159
Alignment:
| Q |
10 |
attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac |
109 |
Q |
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| T |
40512319 |
attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac |
40512220 |
T |
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| Q |
110 |
attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
170 |
Q |
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| T |
40512219 |
attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
40512159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 22122413 - 22122448
Alignment:
| Q |
269 |
accttgccgcagcatgcgcggtatcaaatccacctg |
304 |
Q |
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| T |
22122413 |
accttgccgcagcatgcgcggtatcaaatccacctg |
22122448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 40512060 - 40512025
Alignment:
| Q |
269 |
accttgccgcagcatgcgcggtatcaaatccacctg |
304 |
Q |
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| T |
40512060 |
accttgccgcagcatgcgcggtatcaaatccacctg |
40512025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 39644554 - 39644458
Alignment:
| Q |
74 |
acaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
170 |
Q |
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| T |
39644554 |
acaaacctgattcatatcttcctcatactcaactagattgaaattaatgtcagcatcaagtcccctaaactttatagcagctcgatcataggctctg |
39644458 |
T |
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