View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_low_5 (Length: 402)

Name: NF4376_low_5
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_low_5
NF4376_low_5
[»] chr7 (4 HSPs)
chr7 (10-170)||(22122154-22122314)
chr7 (10-170)||(40512159-40512319)
chr7 (269-304)||(22122413-22122448)
chr7 (269-304)||(40512025-40512060)
[»] chr2 (1 HSPs)
chr2 (74-170)||(39644458-39644554)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 22122154 - 22122314
Alignment:
10 attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22122154 attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac 22122253  T
110 attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22122254 attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg 22122314  T

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Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 40512319 - 40512159
Alignment:
10 attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40512319 attatactaacttacaattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgac 40512220  T
110 attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40512219 attgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg 40512159  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 22122413 - 22122448
Alignment:
269 accttgccgcagcatgcgcggtatcaaatccacctg 304  Q
    ||||||||||||||||||||||||||||||||||||    
22122413 accttgccgcagcatgcgcggtatcaaatccacctg 22122448  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 40512060 - 40512025
Alignment:
269 accttgccgcagcatgcgcggtatcaaatccacctg 304  Q
    ||||||||||||||||||||||||||||||||||||    
40512060 accttgccgcagcatgcgcggtatcaaatccacctg 40512025  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 39644554 - 39644458
Alignment:
74 acaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg 170  Q
    ||||||||| || |||||||| ||||| |||   | |||||||||||| || ||||| |  || | ||||||||| |||||||||||||| ||||||    
39644554 acaaacctgattcatatcttcctcatactcaactagattgaaattaatgtcagcatcaagtcccctaaactttatagcagctcgatcataggctctg 39644458  T

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