View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4376_low_6 (Length: 308)

Name: NF4376_low_6
Description: NF4376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4376_low_6
NF4376_low_6
[»] chr2 (1 HSPs)
chr2 (18-290)||(8843932-8844205)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 8843932 - 8844205
Alignment:
18 atcctcatcttgcattaaatcatttaaatgtataggaaaatgttaataggtgtctttcacgcacacgaaacacatgttaataaactatgtataagatctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
8843932 atcctcatcttgcattaaatcatttaaatgtataggaaaatgttaatagatgtctttcacacacacgaaacacatgttaataaactatgtataagatctc 8844031  T
118 tnnnnnnngagctatgtataagaattttgtttaaaagtcgtatattaaattcttaaagatacactaattatttttcagtgtaaaatttctacttttgagt 217  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
8844032 taaaaaaagagctatgtataagaattttgtttaaaagtcgtatattaaattcttaaagatacactaattattttttagtgtaaaatttttacctttgagt 8844131  T
218 tctttaacacgtgtttt-ggggatctagaattgatgttgtacaaaagcacaaagtttcacaatgtaattaatca 290  Q
    ||||||||| ||||||| |||||| | || |||||||||||||||||||||||||||||| |||||||||||||    
8844132 tctttaacatgtgttttgggggatttggatttgatgttgtacaaaagcacaaagtttcacgatgtaattaatca 8844205  T

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