View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4378-Insertion-1 (Length: 1079)

Name: NF4378-Insertion-1
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4378-Insertion-1
NF4378-Insertion-1
[»] chr1 (1 HSPs)
chr1 (8-998)||(43134968-43135957)
[»] chr8 (1 HSPs)
chr8 (674-980)||(1347517-1347821)
[»] chr3 (2 HSPs)
chr3 (593-668)||(32809820-32809895)
chr3 (597-669)||(27877189-27877261)
[»] chr7 (2 HSPs)
chr7 (680-796)||(26630308-26630425)
chr7 (733-937)||(28769115-28769316)
[»] chr4 (2 HSPs)
chr4 (596-665)||(35345400-35345469)
chr4 (925-980)||(33319049-33319103)


Alignment Details
Target: chr1 (Bit Score: 865; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 8 - 998
Target Start/End: Complemental strand, 43135957 - 43134968
Alignment:
8 atatctccactatgtgtgtcagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43135957 atatctccactatgtgtgttagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca 43135858  T
108 agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccagtaccaaatgtaagtcgtgctta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
43135857 agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccggtaccaaatgtaagtcgtgctta 43135758  T
208 gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43135757 gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa 43135658  T
308 ctttgtatcattgacatgactaat-aannnnnnnnggacagacacatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg 406  Q
    |||||||||||||||||||||||| ||        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43135657 ctttgtatcattgacatgactaattaattttttttggacagacgcatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg 43135558  T
407 ccttaatgaaaaatagtactcaattgagcattctacctctcatttcttgccagagaacaacttgcaacaaagggtttttgaatagaagataaagaaaata 506  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
43135557 ccttaacgaaatatagtactcaattgaacattctacctctcatttcttgccagagaacaactagcaacaaagggtttttgaatagaagataaagaaaata 43135458  T
507 tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtactagtagtgaccgagaatgcgcagacaaaatcacaaac 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
43135457 tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtgctagtagtgaccgagaatgcgcagacaaaatcacaaac 43135358  T
607 aatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgttggagt 706  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43135357 aatgagttgaaatttttaagtaaaattgtagtgaggaatcctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgttggagt 43135258  T
707 tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggca 806  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43135257 tgttgtggtcaaggcatgggagcatatggaaaggacaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggca 43135158  T
807 aaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatggttgttc 906  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
43135157 aaggaggcctgcaaggctgatcatatagctgagatgcaggagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcat-gttgttc 43135059  T
907 gctgaacaagagtgtcacctatgtggatgtcggcttacttgaggtatttcaaagacttggagcttgtctctgataatggacga-gagttgctg 998  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||    
43135058 gct-aacaagagtgtcacctatgtggatgtc-gcttacttgaggtatttcgaagacttggagcttgtctctgattatgcacgaggagttgctg 43134968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 674 - 980
Target Start/End: Complemental strand, 1347821 - 1347517
Alignment:
674 aggttgttgacatgatggtgcagctgttggagt-tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgtt 772  Q
    |||||||| ||||||||||||||  ||||| |  || | ||||||||||||| ||| |  ||||||||  || |||||  || | || |||||| | |||    
1347821 aggttgttaacatgatggtgcagtagttgggggatgatatggtcaaggcatgagagtaggtggaaaggaaaattggtgcccatgaacgatttagtttgtt 1347722  T
773 gaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacata 872  Q
    ||||||||||| |||||||| ||||| | ||||  |  || |   ||||| || | |||||| |||||||||  ||||||| ||  | ||||| | ||||    
1347721 gaaggatattttcaaggagcatcttcagaaggctcataaggctcacaaggatggttatatagttgagatgcaagagaagcgggaccagtctcttcgcata 1347622  T
873 tatctgctctacttggtggatatcatggttgttcgctgaacaagagtgtcacctatgtggatgtcggcttacttgaggtatttcaaagacttggagcttg 972  Q
     || | ||||||||||||| ||||| | |  ||| |||| |||||||| ||||||||||||||||| |||| || ||||| |||| ||||||||||||||    
1347621 aattttctctacttggtgggtatcacgctc-ttcactga-caagagtgccacctatgtggatgtcg-cttagtttaggtacttcagagacttggagcttg 1347525  T
973 tctctgat 980  Q
    ||||||||    
1347524 tctctgat 1347517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 593 - 668
Target Start/End: Original strand, 32809820 - 32809895
Alignment:
593 acaaaatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaag 668  Q
    ||||||||||| |||||||||  ||||||  ||||||||||| |||||| ||| |||||||| |||||||||||||    
32809820 acaaaatcacagacaatgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaag 32809895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 27877189 - 27877261
Alignment:
597 aatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagg 669  Q
    ||||||||||||||||| ||||||| ||  | |||||| ||||||||||  ||||||||||||||| ||||||    
27877189 aatcacaaacaatgagtcgaaatttctagatgaaattgcaatgaggaatcttaaattgagattctaattaagg 27877261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 680 - 796
Target Start/End: Complemental strand, 26630425 - 26630308
Alignment:
680 ttgacatgatggtgcagctgttggagt-tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgttgaagga 778  Q
    ||||||||||||||||| |||||| || ||  ||||| ||||||||||||||  |||||||| ||||| |||  || |||| ||||| ||  ||||||||    
26630425 ttgacatgatggtgcagttgttggggtctgaagtggtgaaggcatgggagcaggtggaaaggacaaattgtggacatgcacgatttatctacttgaagga 26630326  T
779 tatttgcaaggagcgtct 796  Q
     |||| ||||||||||||    
26630325 aattttcaaggagcgtct 26630308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 733 - 937
Target Start/End: Original strand, 28769115 - 28769316
Alignment:
733 tggaaagggcaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatat 832  Q
    |||||||| |||||||||   | |||| |||||||| |||||| ||||||| |||||||||||||| | ||||| |  || ||| | | | || |||| |    
28769115 tggaaaggacaaatggtgcctatgcacgatttagctggttgaatgatattttcaaggagcgtcttcagaaggcacaataggcctac-atgttggtcattt 28769213  T
833 agctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatggttgttcgctgaacaagagtgtcacctatgtgg 932  Q
     |||||||||||| |||||||  || ||||| ||| ||||||| |||| |||||| ||| |||||| | | ||| ||| ||||||| | |||||||||||    
28769214 ggctgagatgcaggagaagcggaaacaatctttccgcatatatttgctatacttgatgggtatcat-gctcttcactg-acaagagcgccacctatgtgg 28769311  T
933 atgtc 937  Q
    |||||    
28769312 atgtc 28769316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 35345469 - 35345400
Alignment:
596 aaatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagtt 665  Q
    ||||||||  |||||||||||||||| |||| ||||||| |||||  ||| |||||||||||||||||||    
35345469 aaatcacatgcaatgagttgaaatttctaagaaaaattgcaatgaaaaatcctaaattgagattctagtt 35345400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 925 - 980
Target Start/End: Complemental strand, 33319103 - 33319049
Alignment:
925 ctatgtggatgtcggcttacttgaggtatttcaaagacttggagcttgtctctgat 980  Q
    |||||||||||| | |||| |||||||| |||||| ||||||||||||||||||||    
33319103 ctatgtggatgttg-cttatttgaggtacttcaaaaacttggagcttgtctctgat 33319049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University