View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4378-Insertion-1 (Length: 1079)
Name: NF4378-Insertion-1
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4378-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 865; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 8 - 998
Target Start/End: Complemental strand, 43135957 - 43134968
Alignment:
| Q |
8 |
atatctccactatgtgtgtcagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca |
107 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135957 |
atatctccactatgtgtgttagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca |
43135858 |
T |
|
| Q |
108 |
agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccagtaccaaatgtaagtcgtgctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43135857 |
agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccggtaccaaatgtaagtcgtgctta |
43135758 |
T |
|
| Q |
208 |
gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135757 |
gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa |
43135658 |
T |
|
| Q |
308 |
ctttgtatcattgacatgactaat-aannnnnnnnggacagacacatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg |
406 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135657 |
ctttgtatcattgacatgactaattaattttttttggacagacgcatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg |
43135558 |
T |
|
| Q |
407 |
ccttaatgaaaaatagtactcaattgagcattctacctctcatttcttgccagagaacaacttgcaacaaagggtttttgaatagaagataaagaaaata |
506 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43135557 |
ccttaacgaaatatagtactcaattgaacattctacctctcatttcttgccagagaacaactagcaacaaagggtttttgaatagaagataaagaaaata |
43135458 |
T |
|
| Q |
507 |
tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtactagtagtgaccgagaatgcgcagacaaaatcacaaac |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135457 |
tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtgctagtagtgaccgagaatgcgcagacaaaatcacaaac |
43135358 |
T |
|
| Q |
607 |
aatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgttggagt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135357 |
aatgagttgaaatttttaagtaaaattgtagtgaggaatcctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgttggagt |
43135258 |
T |
|
| Q |
707 |
tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggca |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135257 |
tgttgtggtcaaggcatgggagcatatggaaaggacaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggca |
43135158 |
T |
|
| Q |
807 |
aaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatggttgttc |
906 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
43135157 |
aaggaggcctgcaaggctgatcatatagctgagatgcaggagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcat-gttgttc |
43135059 |
T |
|
| Q |
907 |
gctgaacaagagtgtcacctatgtggatgtcggcttacttgaggtatttcaaagacttggagcttgtctctgataatggacga-gagttgctg |
998 |
Q |
| |
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||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
43135058 |
gct-aacaagagtgtcacctatgtggatgtc-gcttacttgaggtatttcgaagacttggagcttgtctctgattatgcacgaggagttgctg |
43134968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 674 - 980
Target Start/End: Complemental strand, 1347821 - 1347517
Alignment:
| Q |
674 |
aggttgttgacatgatggtgcagctgttggagt-tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgtt |
772 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | || | ||||||||||||| ||| | |||||||| || ||||| || | || |||||| | ||| |
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|
| T |
1347821 |
aggttgttaacatgatggtgcagtagttgggggatgatatggtcaaggcatgagagtaggtggaaaggaaaattggtgcccatgaacgatttagtttgtt |
1347722 |
T |
|
| Q |
773 |
gaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacata |
872 |
Q |
| |
|
||||||||||| |||||||| ||||| | |||| | || | ||||| || | |||||| ||||||||| ||||||| || | ||||| | |||| |
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|
| T |
1347721 |
gaaggatattttcaaggagcatcttcagaaggctcataaggctcacaaggatggttatatagttgagatgcaagagaagcgggaccagtctcttcgcata |
1347622 |
T |
|
| Q |
873 |
tatctgctctacttggtggatatcatggttgttcgctgaacaagagtgtcacctatgtggatgtcggcttacttgaggtatttcaaagacttggagcttg |
972 |
Q |
| |
|
|| | ||||||||||||| ||||| | | ||| |||| |||||||| ||||||||||||||||| |||| || ||||| |||| |||||||||||||| |
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|
| T |
1347621 |
aattttctctacttggtgggtatcacgctc-ttcactga-caagagtgccacctatgtggatgtcg-cttagtttaggtacttcagagacttggagcttg |
1347525 |
T |
|
| Q |
973 |
tctctgat |
980 |
Q |
| |
|
|||||||| |
|
|
| T |
1347524 |
tctctgat |
1347517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 593 - 668
Target Start/End: Original strand, 32809820 - 32809895
Alignment:
| Q |
593 |
acaaaatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaag |
668 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||| |||||| ||| |||||||| ||||||||||||| |
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|
| T |
32809820 |
acaaaatcacagacaatgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaag |
32809895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 27877189 - 27877261
Alignment:
| Q |
597 |
aatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagg |
669 |
Q |
| |
|
||||||||||||||||| ||||||| || | |||||| |||||||||| ||||||||||||||| |||||| |
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|
| T |
27877189 |
aatcacaaacaatgagtcgaaatttctagatgaaattgcaatgaggaatcttaaattgagattctaattaagg |
27877261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 680 - 796
Target Start/End: Complemental strand, 26630425 - 26630308
Alignment:
| Q |
680 |
ttgacatgatggtgcagctgttggagt-tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgttgaagga |
778 |
Q |
| |
|
||||||||||||||||| |||||| || || ||||| |||||||||||||| |||||||| ||||| ||| || |||| ||||| || |||||||| |
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|
| T |
26630425 |
ttgacatgatggtgcagttgttggggtctgaagtggtgaaggcatgggagcaggtggaaaggacaaattgtggacatgcacgatttatctacttgaagga |
26630326 |
T |
|
| Q |
779 |
tatttgcaaggagcgtct |
796 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
26630325 |
aattttcaaggagcgtct |
26630308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 733 - 937
Target Start/End: Original strand, 28769115 - 28769316
Alignment:
| Q |
733 |
tggaaagggcaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatat |
832 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||||| |||||| ||||||| |||||||||||||| | ||||| | || ||| | | | || |||| | |
|
|
| T |
28769115 |
tggaaaggacaaatggtgcctatgcacgatttagctggttgaatgatattttcaaggagcgtcttcagaaggcacaataggcctac-atgttggtcattt |
28769213 |
T |
|
| Q |
833 |
agctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatggttgttcgctgaacaagagtgtcacctatgtgg |
932 |
Q |
| |
|
|||||||||||| ||||||| || ||||| ||| ||||||| |||| |||||| ||| |||||| | | ||| ||| ||||||| | ||||||||||| |
|
|
| T |
28769214 |
ggctgagatgcaggagaagcggaaacaatctttccgcatatatttgctatacttgatgggtatcat-gctcttcactg-acaagagcgccacctatgtgg |
28769311 |
T |
|
| Q |
933 |
atgtc |
937 |
Q |
| |
|
||||| |
|
|
| T |
28769312 |
atgtc |
28769316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 35345469 - 35345400
Alignment:
| Q |
596 |
aaatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagtt |
665 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
35345469 |
aaatcacatgcaatgagttgaaatttctaagaaaaattgcaatgaaaaatcctaaattgagattctagtt |
35345400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 925 - 980
Target Start/End: Complemental strand, 33319103 - 33319049
Alignment:
| Q |
925 |
ctatgtggatgtcggcttacttgaggtatttcaaagacttggagcttgtctctgat |
980 |
Q |
| |
|
|||||||||||| | |||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
33319103 |
ctatgtggatgttg-cttatttgaggtacttcaaaaacttggagcttgtctctgat |
33319049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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