View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4378-Insertion-2 (Length: 1010)

Name: NF4378-Insertion-2
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4378-Insertion-2
NF4378-Insertion-2
[»] chr3 (27 HSPs)
chr3 (298-882)||(30486074-30486655)
chr3 (26-284)||(30485788-30486047)
chr3 (8-286)||(30505556-30505833)
chr3 (8-205)||(30516323-30516528)
chr3 (21-248)||(30520548-30520783)
chr3 (21-205)||(30489733-30489925)
chr3 (678-865)||(30522913-30523096)
chr3 (362-597)||(30506970-30507200)
chr3 (709-882)||(30507264-30507434)
chr3 (27-204)||(30491850-30492020)
chr3 (21-205)||(30508792-30508969)
chr3 (362-526)||(30522684-30522848)
chr3 (104-172)||(31830043-31830112)
chr3 (123-205)||(30453855-30453937)
chr3 (21-69)||(30525402-30525450)
chr3 (889-935)||(7104547-7104594)
chr3 (124-170)||(30450134-30450181)
chr3 (24-94)||(30450009-30450078)
chr3 (301-339)||(30506920-30506958)
chr3 (215-281)||(30516547-30516613)
chr3 (301-339)||(30522634-30522672)
chr3 (299-340)||(30505858-30505899)
chr3 (21-77)||(30453762-30453818)
chr3 (21-77)||(30522426-30522482)
chr3 (678-721)||(30505973-30506016)
chr3 (133-205)||(30455329-30455401)
chr3 (678-719)||(30521396-30521437)
[»] chr4 (2 HSPs)
chr4 (21-77)||(17856516-17856572)
chr4 (99-205)||(17856367-17856469)
[»] chr6 (1 HSPs)
chr6 (109-154)||(10594641-10594686)
[»] chr1 (1 HSPs)
chr1 (889-930)||(36632271-36632312)


Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 298 - 882
Target Start/End: Original strand, 30486074 - 30486655
Alignment:
Q  298 taaagtatcatggaatcaatttgctgcttttgcatttgcactcnnnnnnnnncttcttcccccttcttttaatttgataaaaattaatagcgttcacatt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  30486074 taaagtatcatggaatcaatttgctgcttttgcatttgcactcttttttttt-ttcttcccccttcttttaatttgataaaaattaatagcgttcacatt 30486172  T
Q  398 tttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaagttaagttgttccgcacatgtgcaatgatagtgttaact 497  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  30486173 tttatattaatcaaaatactgaagaaagttatgcgaagatgg-tatagaaaggcgttctaagttaagttgtttcgcacatgtgcaatcatagtgttaact 30486271  T
Q  498 taagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaattgtgaagcgaacattgaattgaaatgcttgtagatg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30486272 taagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaattgtgaagcgaacattgaattgaaatgcttgtagatg 30486371  T
Q  598 cctaattaagactgtgcgatcacccccttcaattcaatgttttttgagtaataaaagtaagttatcacgagtatatttactattgatggtgtagcaactt 697  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30486372 cctaattaagattgtgcgatcacccccttcaattcaatgttttttgagtaataaaagtaagttatcacgagtatacttactattgatggtgtagcaactt 30486471  T
Q  698 cagtagtttcaatgcagcagatatatgaataataatttcaaaaaattctttagaggaaagaccaaataaatctcaatttttagtattggtgaggaggtga 797  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30486472 cagtagtttcaatgcagcagatatatgaataataatttaaaaaaattctttagaggaaagaccaaataaatctcaatttttagtattggtgaggaggtga 30486571  T
Q  798 gctggaagcatattgcagaggttgctttgtttgcaataaattaactgcttggttagaaaacagtagatgaagatgctgtcatttt 882  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30486572 gctggaagcatattgcagaggttgctttgtttgcaat-aattaactgcttggttagaaaacagtagatgaagatgctgtcatttt 30486655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 30485788 - 30486047
Alignment:
Q  26 gttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttttcagaatatggtggatttgttataattaggc 125  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  30485788 gttaaggattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttttcagaatatggtggatttgttgtaattgggc 30485887  T
Q  126 agcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttat 224  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||    
T  30485888 agcggccagacaaccgtagagatggaatccacagatgttgagttttttcttgtctcacacttctactaattccatctcacatttttttcttatttgttat 30485987  T
Q  225 ctgctggttagatttaattgttcacttggatttgatatttttaatattgacataactatt 284  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30485988 ctgctggttagatttaattgttcacttggatttgatattattaatattgacataactatt 30486047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 30505556 - 30505833
Alignment:
Q  8 gaaacacttcatgttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttttcagaatatggtg 107  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||    
T  30505556 gaaacacttcatgttctcgtcaaagattcagtgcggacagaaaaagcttgattttagctactgcttg-tttctgacgaacatatttttcagaatatggtg 30505654  T
Q  108 gatttgttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcacan 206  Q
    |||||||| ||||| |||||||||  ||||||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  30505655 gatttgttgtaattcggcagcggctcgacaaccgtggagatggaatccacagatgttgagttttttcttgtctcacacttctactaattccatctcacat 30505754  T
Q  207 nnnnnncttatttgttatctgctggttagatttaattgttcacttggatttgatatttttaatattgacataactatttg 286  Q
          |||||||||||||||||  ||| | ||||||||||| |||||| | |||||||| ||||||| |||||| ||||    
T  30505755 ttttttcttatttgttatctgctaatta-aattaattgttcatttggatgtaatatttttgatattgaaataactttttg 30505833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 30516323 - 30516528
Alignment:
Q  8 gaaacacttcatgttcttgttaaagattcagtgcggacagaaaaagcttgatt---atagctacttcttgttttctgacgaacatgtttttcag----aa 100  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||    |||||||| |||||||||||  |||||||||||||||    ||    
T  30516323 gaaacacttcatgttctcattaaagattcagtgcggacaaaaaaagcttgattgcagtagctactgcttgttttctggtgaacatgtttttcagaaacaa 30516422  T
Q  101 tatggtggatttgttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccat 199  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||| |||||||||||| ||    
T  30516423 tatggtggatttgttgtaattggacagcggccagacaaccgtagagatggaatccacagatgttgagtttttccttgtctcacatttctactaattctat 30516522  T
Q  200 ctcaca 205  Q
    ||||||    
T  30516523 ctcaca 30516528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 30520548 - 30520783
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagctt-gattatag---ctacttcttgttttctgacgaacatgtttttcagaa----tatggtggattt 112  Q
    |||||||| ||||||||| || |||||||||||||| |||| |||   ||||| |||||||||||  |||||||||||||||||    ||||||||||||    
T  30520548 ttcttgttgaagattcagcgctgacagaaaaagctttgattgtagtagctactgcttgttttctggtgaacatgtttttcagaaacaatatggtggattt 30520647  T
Q  113 gttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnn 211  Q
    ||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| ||||  |||||||||||||||||||||          
T  30520648 gttgtaattgggcagtggccagacaaccgtagagatggaatccacagatgttgaggtttttcttgtctcaccattctactaattccatctcaca-atttt 30520746  T
Q  212 ncttatttgttatctgctggttagatttaattgttca 248  Q
     |||||||||||||| ||  ||| |||||||||||||    
T  30520747 tcttatttgttatctcctaattaaatttaattgttca 30520783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 30489733 - 30489925
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagcttgattatag---ctacttcttgttttctgacgaacatgtttttcagaa----tatggtggatttg 113  Q
    |||| ||| ||||||||| || |||||||||||||||||| |||   ||||| |||||||||||  ||||||||||||| |||    |||||||||||||    
T  30489733 ttctcgttgaagattcagcgctgacagaaaaagcttgattgtagtagctactgcttgttttctggtgaacatgtttttccgaaacaatatggtggatttg 30489832  T
Q  114 ttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca 205  Q
    || ||||| ||||  |||||||||||||||||||| |||| ||||||||||||||||||| |||| ||||  |||||||||||||||||||||    
T  30489833 ttgtaattgggcattggccagacaaccgtagagatggaatccacagatgttgagtttttttttgtctcaccattctactaattccatctcaca 30489925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 678 - 865
Target Start/End: Original strand, 30522913 - 30523096
Alignment:
Q  678 tattgatggtgtagcaacttcagtagtttcaatgcagcagatatatgaata-ataatttcaaaaaattctttagaggaaagaccaaataaatctcaattt 776  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||||| || |||  ||| || ||||||||  ||||||| ||||||||||  |||    
T  30522913 tattgaaggtgtag-aacttcagtagtttcgatgcagcagatatatgaatacattatt--aaagaaatctttagacaaaagacctaataaatctcggttt 30523009  T
Q  777 ttagtattggtgaggaggtgagctggaagcatattgcagaggttgctttgtttgcaataaattaactgcttggttagaaaacagtagat 865  Q
    | |||| | || |||||||||| |||||||||| ||||| ||||| | |||||||||| || ||||||||||||||||||||| |||||    
T  30523010 tcagtact-gtaaggaggtgagttggaagcataatgcagcggttgttctgtttgcaat-aagtaactgcttggttagaaaacattagat 30523096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 362 - 597
Target Start/End: Original strand, 30506970 - 30507200
Alignment:
Q  362 tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaa-gt 460  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |  ||| ||||||||   || ||||||  |    
T  30506970 tcttttaatttaataataattaatagctttcacatttttctattaatcaaaatactgaataaagttatgtggggat-ggtatagagttgcatcctaatat 30507068  T
Q  461 taagttgttccgcacatgtgcaatgatagtgttaacttaagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaa 560  Q
    |||||||||  ||| |||||||||    |||||| || |||| |||||||| |||||||||||||| |  ||||||  | |||||  |||| ||||||||    
T  30507069 taagttgtttagcatatgtgcaat----gtgttagctaaagacatgtttataccatctcttacatt-aatttttataaatgtttgtccattaagttcaaa 30507163  T
Q  561 ttgtgaagcgaacattgaattgaaatgcttgtagatg 597  Q
    ||||||| | |||| |||||||||| | |||||||||    
T  30507164 ttgtgaaccaaacaatgaattgaaacgtttgtagatg 30507200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 709 - 882
Target Start/End: Original strand, 30507264 - 30507434
Alignment:
Q  709 atgcagcagatatatgaata-ataatttcaaaaaattctttagaggaaagaccaaataaatctcaatttttagtattggtgaggaggtgagctggaagca 807  Q
    |||||||||||||||||||| || |||  ||| || ||||||||  ||||||| ||||| || |  |||| ||||||| |||||||||||||||||||||    
T  30507264 atgcagcagatatatgaatacattatt--aaagaaatctttagacaaaagacctaataattcacggttttcagtattg-tgaggaggtgagctggaagca 30507360  T
Q  808 tattgcagaggttgctttgtttgcaataaattaactgcttggttagaaaacagtagatgaagatgctgtcatttt 882  Q
    || ||||| ||||| | |||||||||| || ||||||||||||||||||||| ||||| | |||||||| |||||    
T  30507361 taatgcaggggttgttctgtttgcaat-aagtaactgcttggttagaaaacattagataatgatgctgtaatttt 30507434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 30491850 - 30492020
Alignment:
Q  27 ttaaagattcagtgcggacagaaaaagcttgattatagctacttct---tgttttctgacgaacatgtttttcagaata-tggtggatttgttataatta 122  Q
    |||||||||||||||| |||| ||||||||||||||||||||| ||   ||||||||||         ||||||||| | |||||| |||||| |||||     
T  30491850 ttaaagattcagtgcgcacagcaaaagcttgattatagctactactgcttgttttctga---------ttttcagaaaaatggtgggtttgttgtaattg 30491940  T
Q  123 ggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcac 204  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||||||||||   | ||  ||||||||||||||||||||||    
T  30491941 ggcagcggccagacaaccgtagagatggaatccacagatcttgagttttttc---tctcttacttctactaattccatctcac 30492020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 30508792 - 30508969
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttct---tgttttctgacgaacatgtttttcagaata--tggtggatttgtt 115  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||   |||||||||          ||||||||| |  | |||| ||||||    
T  30508792 ttcttgttaaagattcagtgcgcacaggaaaagcttgattatagctactactgcttgttttctgc---------ttttcagaaaaaatagtgggtttgtt 30508882  T
Q  116 ataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca 205  Q
     ||||| || ||||||||||||||||||||||| |||| ||||||| |||||||||||    | |||||||||||||||||||||||||||    
T  30508883 gtaattgggaagcggccagacaaccgtagagatggaatccacagatcttgagtttttt----tctcacacttctactaattccatctcaca 30508969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 362 - 526
Target Start/End: Original strand, 30522684 - 30522848
Alignment:
Q  362 tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaa-gt 460  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |   || ||||||||   || ||||||       
T  30522684 tcttttaatttaataataattaatagctttcacatttttttattaatcaaaatactgaataaagttatgtgggtat-ggtatagagttgcatcctaataa 30522782  T
Q  461 taagttgttccgcacatgtgcaatgatagtgttaacttaagaaatgtttatgccatctcttacatt 526  Q
    |||||||||  ||  ||||||||| ||||||||| ||||||| |||||||| |||| |||||||||    
T  30522783 taagttgtttagcttatgtgcaattatagtgttagcttaagacatgtttataccatttcttacatt 30522848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 31830043 - 31830112
Alignment:
Q  104 ggtggatttgttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagtttttt 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  31830043 ggtgggtttgttataattaggcagcggccagacaaccgtagagatggaatccacagatgctgattttttt 31830112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 30453855 - 30453937
Alignment:
Q  123 ggcagcggccagacaaccgtagagatcgaat-cacaga-tgttgagttttttcttgtttcacacttctactaattccatctcaca 205  Q
    |||||||||||||||||||||||||| |||| |||||| || |||| ||||  |||| |||||||||||||||||||||||||||    
T  30453855 ggcagcggccagacaaccgtagagatggaatccacagagtggtgaggtttt--ttgtctcacacttctactaattccatctcaca 30453937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 30525402 - 30525450
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctact 69  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  30525402 ttcttgttaaagattcagtgcgcacaggaaaagcttgattatagctact 30525450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 889 - 935
Target Start/End: Original strand, 7104547 - 7104594
Alignment:
Q  889 ggttaatatgtctt-acccctgtaatttgggcaagttccggttacccc 935  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  7104547 ggttaatatgtctttacccctgtaatttgggcgagttccggttacccc 7104594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 30450134 - 30450181
Alignment:
Q  124 gcagcggccagacaaccgtagagatcgaat-cacagatgttgagtttt 170  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  30450134 gcagcggccagacaaccgtagagatggaatccacagatgttgagtttt 30450181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 30450009 - 30450078
Alignment:
Q  24 ttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttt 94  Q
    ||||| |||||| |||||| |||||||| ||||||||| ||||||| | ||||| ||||||||||||||||    
T  30450009 ttgttgaagatttagtgcgtacagaaaaggcttgattagagctactgcatgttt-ctgacgaacatgtttt 30450078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 30506920 - 30506958
Alignment:
Q  301 agtatcatggaatcaatttgctgcttttgcatttgcact 339  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30506920 agtattatggaatcaatttgctgcttttgcatttgcact 30506958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 30516547 - 30516613
Alignment:
Q  215 tatttgttatctgctggttagatttaattgttcacttggatttgatatttttaatattgacataact 281  Q
    |||||||||||||||   || ||||||||||||| |||||| | ||||||||||||| |||||||||    
T  30516547 tatttgttatctgctaactaaatttaattgttcatttggatgtaatatttttaatatcgacataact 30516613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 30522634 - 30522672
Alignment:
Q  301 agtatcatggaatcaatttgctgcttttgcatttgcact 339  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30522634 agtattatggaatcaatttgctgcttttgcatttgcact 30522672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 30505858 - 30505899
Alignment:
Q  299 aaagtatcatggaatcaatttgctgcttttgcatttgcactc 340  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  30505858 aaagtattatgtaatcaatttgctgcttttgcatttgcactc 30505899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 30453762 - 30453818
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttt 77  Q
    |||||||| ||||||  ||||  |||||||||||||||||||||||||| |||||||    
T  30453762 ttcttgttgaagattttgtgcctacagaaaaagcttgattatagctactgcttgttt 30453818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 30522426 - 30522482
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttt 77  Q
    |||||||| |||||| |||||| | ||||||||||||||||||||| || |||||||    
T  30522426 ttcttgttgaagatttagtgcgtatagaaaaagcttgattatagctgctgcttgttt 30522482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 721
Target Start/End: Original strand, 30505973 - 30506016
Alignment:
Q  678 tattgatggtgtagcaacttcagtagtttcaatgcagcagatat 721  Q
    |||||| ||||||||||||||| | |||||||||||||||||||    
T  30505973 tattgacggtgtagcaacttcaatggtttcaatgcagcagatat 30506016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 30455329 - 30455401
Alignment:
Q  133 agacaaccgtagagatcgaatc-acagatgttgagttttttcttgtttcacacttctactaattccatctcaca 205  Q
    |||||||| ||||||| ||||| ||| ||| |||||||||| ||||||||   |||||||||||||||||||||    
T  30455329 agacaaccatagagatggaatccacaaatgctgagtttttt-ttgtttcatcattctactaattccatctcaca 30455401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 719
Target Start/End: Original strand, 30521396 - 30521437
Alignment:
Q  678 tattgatggtgtagcaacttcagtagtttcaatgcagcagat 719  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  30521396 tattgaaggtgtagcaacttcaatggtttcaatgcagcagat 30521437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 17856572 - 17856516
Alignment:
Q  21 ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttt 77  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  17856572 ttcttgttgaagattcagtgcttacagaaaaagcttgattatagctacttcttgttt 17856516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 17856469 - 17856367
Alignment:
Q  99 aatatggtggatttgttataattaggcagcggccagacaaccgtagagatcgaatc-acagatgttgagttttttcttgtttcacacttctactaattcc 197  Q
    |||||||| |||||||  ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||    || ||||  |||||||||||||    
T  17856469 aatatggtagatttgtg-taattgggcagcggccagacaaccgtagagatggaatccacagatgctgagttttt----gtctcaccattctactaattcc 17856375  T
Q  198 atctcaca 205  Q
    ||||||||    
T  17856374 atctcaca 17856367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 10594641 - 10594686
Alignment:
Q  109 atttgttataattaggcagcggccagacaaccgtagagatcgaatc 154  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10594641 atttgttgtaattgggcagcggccagacaaccgtagagatggaatc 10594686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 930
Target Start/End: Complemental strand, 36632312 - 36632271
Alignment:
Q  889 ggttaatatgtcttacccctgtaatttgggcaagttccggtt 930  Q
    ||||||||||||||  ||||||||||||||| ||||||||||    
T  36632312 ggttaatatgtctttaccctgtaatttgggcgagttccggtt 36632271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University