View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4378-Insertion-2 (Length: 1010)
Name: NF4378-Insertion-2
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4378-Insertion-2 |
 |  |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 298 - 882
Target Start/End: Original strand, 30486074 - 30486655
Alignment:
Q |
298 |
taaagtatcatggaatcaatttgctgcttttgcatttgcactcnnnnnnnnncttcttcccccttcttttaatttgataaaaattaatagcgttcacatt |
397 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
30486074 |
taaagtatcatggaatcaatttgctgcttttgcatttgcactcttttttttt-ttcttcccccttcttttaatttgataaaaattaatagcgttcacatt |
30486172 |
T |
 |
Q |
398 |
tttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaagttaagttgttccgcacatgtgcaatgatagtgttaact |
497 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |
|
|
T |
30486173 |
tttatattaatcaaaatactgaagaaagttatgcgaagatgg-tatagaaaggcgttctaagttaagttgtttcgcacatgtgcaatcatagtgttaact |
30486271 |
T |
 |
Q |
498 |
taagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaattgtgaagcgaacattgaattgaaatgcttgtagatg |
597 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
30486272 |
taagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaattgtgaagcgaacattgaattgaaatgcttgtagatg |
30486371 |
T |
 |
Q |
598 |
cctaattaagactgtgcgatcacccccttcaattcaatgttttttgagtaataaaagtaagttatcacgagtatatttactattgatggtgtagcaactt |
697 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
T |
30486372 |
cctaattaagattgtgcgatcacccccttcaattcaatgttttttgagtaataaaagtaagttatcacgagtatacttactattgatggtgtagcaactt |
30486471 |
T |
 |
Q |
698 |
cagtagtttcaatgcagcagatatatgaataataatttcaaaaaattctttagaggaaagaccaaataaatctcaatttttagtattggtgaggaggtga |
797 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
30486472 |
cagtagtttcaatgcagcagatatatgaataataatttaaaaaaattctttagaggaaagaccaaataaatctcaatttttagtattggtgaggaggtga |
30486571 |
T |
 |
Q |
798 |
gctggaagcatattgcagaggttgctttgtttgcaataaattaactgcttggttagaaaacagtagatgaagatgctgtcatttt |
882 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
30486572 |
gctggaagcatattgcagaggttgctttgtttgcaat-aattaactgcttggttagaaaacagtagatgaagatgctgtcatttt |
30486655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 30485788 - 30486047
Alignment:
Q |
26 |
gttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttttcagaatatggtggatttgttataattaggc |
125 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
T |
30485788 |
gttaaggattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttttcagaatatggtggatttgttgtaattgggc |
30485887 |
T |
 |
Q |
126 |
agcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttat |
224 |
Q |
|
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
30485888 |
agcggccagacaaccgtagagatggaatccacagatgttgagttttttcttgtctcacacttctactaattccatctcacatttttttcttatttgttat |
30485987 |
T |
 |
Q |
225 |
ctgctggttagatttaattgttcacttggatttgatatttttaatattgacataactatt |
284 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
T |
30485988 |
ctgctggttagatttaattgttcacttggatttgatattattaatattgacataactatt |
30486047 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 30505556 - 30505833
Alignment:
Q |
8 |
gaaacacttcatgttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttttcagaatatggtg |
107 |
Q |
|
|
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||| |
|
|
T |
30505556 |
gaaacacttcatgttctcgtcaaagattcagtgcggacagaaaaagcttgattttagctactgcttg-tttctgacgaacatatttttcagaatatggtg |
30505654 |
T |
 |
Q |
108 |
gatttgttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcacan |
206 |
Q |
|
|
|||||||| ||||| ||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
T |
30505655 |
gatttgttgtaattcggcagcggctcgacaaccgtggagatggaatccacagatgttgagttttttcttgtctcacacttctactaattccatctcacat |
30505754 |
T |
 |
Q |
207 |
nnnnnncttatttgttatctgctggttagatttaattgttcacttggatttgatatttttaatattgacataactatttg |
286 |
Q |
|
|
||||||||||||||||| ||| | ||||||||||| |||||| | |||||||| ||||||| |||||| |||| |
|
|
T |
30505755 |
ttttttcttatttgttatctgctaatta-aattaattgttcatttggatgtaatatttttgatattgaaataactttttg |
30505833 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 30516323 - 30516528
Alignment:
Q |
8 |
gaaacacttcatgttcttgttaaagattcagtgcggacagaaaaagcttgatt---atagctacttcttgttttctgacgaacatgtttttcag----aa |
100 |
Q |
|
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||| || |
|
|
T |
30516323 |
gaaacacttcatgttctcattaaagattcagtgcggacaaaaaaagcttgattgcagtagctactgcttgttttctggtgaacatgtttttcagaaacaa |
30516422 |
T |
 |
Q |
101 |
tatggtggatttgttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccat |
199 |
Q |
|
|
||||||||||||||| ||||| | |||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||| |||||||||||| || |
|
|
T |
30516423 |
tatggtggatttgttgtaattggacagcggccagacaaccgtagagatggaatccacagatgttgagtttttccttgtctcacatttctactaattctat |
30516522 |
T |
 |
Q |
200 |
ctcaca |
205 |
Q |
|
|
|||||| |
|
|
T |
30516523 |
ctcaca |
30516528 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 30520548 - 30520783
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagctt-gattatag---ctacttcttgttttctgacgaacatgtttttcagaa----tatggtggattt |
112 |
Q |
|
|
|||||||| ||||||||| || |||||||||||||| |||| ||| ||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
T |
30520548 |
ttcttgttgaagattcagcgctgacagaaaaagctttgattgtagtagctactgcttgttttctggtgaacatgtttttcagaaacaatatggtggattt |
30520647 |
T |
 |
Q |
113 |
gttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnn |
211 |
Q |
|
|
||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||| |
|
|
T |
30520648 |
gttgtaattgggcagtggccagacaaccgtagagatggaatccacagatgttgaggtttttcttgtctcaccattctactaattccatctcaca-atttt |
30520746 |
T |
 |
Q |
212 |
ncttatttgttatctgctggttagatttaattgttca |
248 |
Q |
|
|
|||||||||||||| || ||| ||||||||||||| |
|
|
T |
30520747 |
tcttatttgttatctcctaattaaatttaattgttca |
30520783 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 30489733 - 30489925
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagcttgattatag---ctacttcttgttttctgacgaacatgtttttcagaa----tatggtggatttg |
113 |
Q |
|
|
|||| ||| ||||||||| || |||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||| ||| ||||||||||||| |
|
|
T |
30489733 |
ttctcgttgaagattcagcgctgacagaaaaagcttgattgtagtagctactgcttgttttctggtgaacatgtttttccgaaacaatatggtggatttg |
30489832 |
T |
 |
Q |
114 |
ttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca |
205 |
Q |
|
|
|| ||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
T |
30489833 |
ttgtaattgggcattggccagacaaccgtagagatggaatccacagatgttgagtttttttttgtctcaccattctactaattccatctcaca |
30489925 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 678 - 865
Target Start/End: Original strand, 30522913 - 30523096
Alignment:
Q |
678 |
tattgatggtgtagcaacttcagtagtttcaatgcagcagatatatgaata-ataatttcaaaaaattctttagaggaaagaccaaataaatctcaattt |
776 |
Q |
|
|
|||||| ||||||| ||||||||||||||| |||||||||||||||||||| || ||| ||| || |||||||| ||||||| |||||||||| ||| |
|
|
T |
30522913 |
tattgaaggtgtag-aacttcagtagtttcgatgcagcagatatatgaatacattatt--aaagaaatctttagacaaaagacctaataaatctcggttt |
30523009 |
T |
 |
Q |
777 |
ttagtattggtgaggaggtgagctggaagcatattgcagaggttgctttgtttgcaataaattaactgcttggttagaaaacagtagat |
865 |
Q |
|
|
| |||| | || |||||||||| |||||||||| ||||| ||||| | |||||||||| || ||||||||||||||||||||| ||||| |
|
|
T |
30523010 |
tcagtact-gtaaggaggtgagttggaagcataatgcagcggttgttctgtttgcaat-aagtaactgcttggttagaaaacattagat |
30523096 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 362 - 597
Target Start/End: Original strand, 30506970 - 30507200
Alignment:
Q |
362 |
tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaa-gt |
460 |
Q |
|
|
||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| | ||| |||||||| || |||||| | |
|
|
T |
30506970 |
tcttttaatttaataataattaatagctttcacatttttctattaatcaaaatactgaataaagttatgtggggat-ggtatagagttgcatcctaatat |
30507068 |
T |
 |
Q |
461 |
taagttgttccgcacatgtgcaatgatagtgttaacttaagaaatgtttatgccatctcttacattgagcttttatttacgtttggtcattcagttcaaa |
560 |
Q |
|
|
||||||||| ||| ||||||||| |||||| || |||| |||||||| |||||||||||||| | |||||| | ||||| |||| |||||||| |
|
|
T |
30507069 |
taagttgtttagcatatgtgcaat----gtgttagctaaagacatgtttataccatctcttacatt-aatttttataaatgtttgtccattaagttcaaa |
30507163 |
T |
 |
Q |
561 |
ttgtgaagcgaacattgaattgaaatgcttgtagatg |
597 |
Q |
|
|
||||||| | |||| |||||||||| | ||||||||| |
|
|
T |
30507164 |
ttgtgaaccaaacaatgaattgaaacgtttgtagatg |
30507200 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 709 - 882
Target Start/End: Original strand, 30507264 - 30507434
Alignment:
Q |
709 |
atgcagcagatatatgaata-ataatttcaaaaaattctttagaggaaagaccaaataaatctcaatttttagtattggtgaggaggtgagctggaagca |
807 |
Q |
|
|
|||||||||||||||||||| || ||| ||| || |||||||| ||||||| ||||| || | |||| ||||||| ||||||||||||||||||||| |
|
|
T |
30507264 |
atgcagcagatatatgaatacattatt--aaagaaatctttagacaaaagacctaataattcacggttttcagtattg-tgaggaggtgagctggaagca |
30507360 |
T |
 |
Q |
808 |
tattgcagaggttgctttgtttgcaataaattaactgcttggttagaaaacagtagatgaagatgctgtcatttt |
882 |
Q |
|
|
|| ||||| ||||| | |||||||||| || ||||||||||||||||||||| ||||| | |||||||| ||||| |
|
|
T |
30507361 |
taatgcaggggttgttctgtttgcaat-aagtaactgcttggttagaaaacattagataatgatgctgtaatttt |
30507434 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 30491850 - 30492020
Alignment:
Q |
27 |
ttaaagattcagtgcggacagaaaaagcttgattatagctacttct---tgttttctgacgaacatgtttttcagaata-tggtggatttgttataatta |
122 |
Q |
|
|
|||||||||||||||| |||| ||||||||||||||||||||| || |||||||||| ||||||||| | |||||| |||||| ||||| |
|
|
T |
30491850 |
ttaaagattcagtgcgcacagcaaaagcttgattatagctactactgcttgttttctga---------ttttcagaaaaatggtgggtttgttgtaattg |
30491940 |
T |
 |
Q |
123 |
ggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcac |
204 |
Q |
|
|
|||||||||||||||||||||||||| |||| ||||||| |||||||||||| | || |||||||||||||||||||||| |
|
|
T |
30491941 |
ggcagcggccagacaaccgtagagatggaatccacagatcttgagttttttc---tctcttacttctactaattccatctcac |
30492020 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 30508792 - 30508969
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttct---tgttttctgacgaacatgtttttcagaata--tggtggatttgtt |
115 |
Q |
|
|
|||||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||| ||||||||| | | |||| |||||| |
|
|
T |
30508792 |
ttcttgttaaagattcagtgcgcacaggaaaagcttgattatagctactactgcttgttttctgc---------ttttcagaaaaaatagtgggtttgtt |
30508882 |
T |
 |
Q |
116 |
ataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca |
205 |
Q |
|
|
||||| || ||||||||||||||||||||||| |||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
T |
30508883 |
gtaattgggaagcggccagacaaccgtagagatggaatccacagatcttgagtttttt----tctcacacttctactaattccatctcaca |
30508969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 362 - 526
Target Start/End: Original strand, 30522684 - 30522848
Alignment:
Q |
362 |
tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaa-gt |
460 |
Q |
|
|
||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||| | || |||||||| || |||||| |
|
|
T |
30522684 |
tcttttaatttaataataattaatagctttcacatttttttattaatcaaaatactgaataaagttatgtgggtat-ggtatagagttgcatcctaataa |
30522782 |
T |
 |
Q |
461 |
taagttgttccgcacatgtgcaatgatagtgttaacttaagaaatgtttatgccatctcttacatt |
526 |
Q |
|
|
||||||||| || ||||||||| ||||||||| ||||||| |||||||| |||| ||||||||| |
|
|
T |
30522783 |
taagttgtttagcttatgtgcaattatagtgttagcttaagacatgtttataccatttcttacatt |
30522848 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 31830043 - 31830112
Alignment:
Q |
104 |
ggtggatttgttataattaggcagcggccagacaaccgtagagatcgaat-cacagatgttgagtttttt |
172 |
Q |
|
|
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||| |
|
|
T |
31830043 |
ggtgggtttgttataattaggcagcggccagacaaccgtagagatggaatccacagatgctgattttttt |
31830112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 30453855 - 30453937
Alignment:
Q |
123 |
ggcagcggccagacaaccgtagagatcgaat-cacaga-tgttgagttttttcttgtttcacacttctactaattccatctcaca |
205 |
Q |
|
|
|||||||||||||||||||||||||| |||| |||||| || |||| |||| |||| ||||||||||||||||||||||||||| |
|
|
T |
30453855 |
ggcagcggccagacaaccgtagagatggaatccacagagtggtgaggtttt--ttgtctcacacttctactaattccatctcaca |
30453937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 30525402 - 30525450
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctact |
69 |
Q |
|
|
|||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
T |
30525402 |
ttcttgttaaagattcagtgcgcacaggaaaagcttgattatagctact |
30525450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 889 - 935
Target Start/End: Original strand, 7104547 - 7104594
Alignment:
Q |
889 |
ggttaatatgtctt-acccctgtaatttgggcaagttccggttacccc |
935 |
Q |
|
|
|||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
T |
7104547 |
ggttaatatgtctttacccctgtaatttgggcgagttccggttacccc |
7104594 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 30450134 - 30450181
Alignment:
Q |
124 |
gcagcggccagacaaccgtagagatcgaat-cacagatgttgagtttt |
170 |
Q |
|
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
T |
30450134 |
gcagcggccagacaaccgtagagatggaatccacagatgttgagtttt |
30450181 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 30450009 - 30450078
Alignment:
Q |
24 |
ttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttttctgacgaacatgtttt |
94 |
Q |
|
|
||||| |||||| |||||| |||||||| ||||||||| ||||||| | ||||| |||||||||||||||| |
|
|
T |
30450009 |
ttgttgaagatttagtgcgtacagaaaaggcttgattagagctactgcatgttt-ctgacgaacatgtttt |
30450078 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 30506920 - 30506958
Alignment:
Q |
301 |
agtatcatggaatcaatttgctgcttttgcatttgcact |
339 |
Q |
|
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
30506920 |
agtattatggaatcaatttgctgcttttgcatttgcact |
30506958 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 30516547 - 30516613
Alignment:
Q |
215 |
tatttgttatctgctggttagatttaattgttcacttggatttgatatttttaatattgacataact |
281 |
Q |
|
|
||||||||||||||| || ||||||||||||| |||||| | ||||||||||||| ||||||||| |
|
|
T |
30516547 |
tatttgttatctgctaactaaatttaattgttcatttggatgtaatatttttaatatcgacataact |
30516613 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 30522634 - 30522672
Alignment:
Q |
301 |
agtatcatggaatcaatttgctgcttttgcatttgcact |
339 |
Q |
|
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
30522634 |
agtattatggaatcaatttgctgcttttgcatttgcact |
30522672 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 30505858 - 30505899
Alignment:
Q |
299 |
aaagtatcatggaatcaatttgctgcttttgcatttgcactc |
340 |
Q |
|
|
||||||| ||| |||||||||||||||||||||||||||||| |
|
|
T |
30505858 |
aaagtattatgtaatcaatttgctgcttttgcatttgcactc |
30505899 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 30453762 - 30453818
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttt |
77 |
Q |
|
|
|||||||| |||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
T |
30453762 |
ttcttgttgaagattttgtgcctacagaaaaagcttgattatagctactgcttgttt |
30453818 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 30522426 - 30522482
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttt |
77 |
Q |
|
|
|||||||| |||||| |||||| | ||||||||||||||||||||| || ||||||| |
|
|
T |
30522426 |
ttcttgttgaagatttagtgcgtatagaaaaagcttgattatagctgctgcttgttt |
30522482 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 721
Target Start/End: Original strand, 30505973 - 30506016
Alignment:
Q |
678 |
tattgatggtgtagcaacttcagtagtttcaatgcagcagatat |
721 |
Q |
|
|
|||||| ||||||||||||||| | ||||||||||||||||||| |
|
|
T |
30505973 |
tattgacggtgtagcaacttcaatggtttcaatgcagcagatat |
30506016 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 30455329 - 30455401
Alignment:
Q |
133 |
agacaaccgtagagatcgaatc-acagatgttgagttttttcttgtttcacacttctactaattccatctcaca |
205 |
Q |
|
|
|||||||| ||||||| ||||| ||| ||| |||||||||| |||||||| ||||||||||||||||||||| |
|
|
T |
30455329 |
agacaaccatagagatggaatccacaaatgctgagtttttt-ttgtttcatcattctactaattccatctcaca |
30455401 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 719
Target Start/End: Original strand, 30521396 - 30521437
Alignment:
Q |
678 |
tattgatggtgtagcaacttcagtagtttcaatgcagcagat |
719 |
Q |
|
|
|||||| ||||||||||||||| | ||||||||||||||||| |
|
|
T |
30521396 |
tattgaaggtgtagcaacttcaatggtttcaatgcagcagat |
30521437 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 17856572 - 17856516
Alignment:
Q |
21 |
ttcttgttaaagattcagtgcggacagaaaaagcttgattatagctacttcttgttt |
77 |
Q |
|
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
17856572 |
ttcttgttgaagattcagtgcttacagaaaaagcttgattatagctacttcttgttt |
17856516 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 17856469 - 17856367
Alignment:
Q |
99 |
aatatggtggatttgttataattaggcagcggccagacaaccgtagagatcgaatc-acagatgttgagttttttcttgtttcacacttctactaattcc |
197 |
Q |
|
|
|||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||| || |||| ||||||||||||| |
|
|
T |
17856469 |
aatatggtagatttgtg-taattgggcagcggccagacaaccgtagagatggaatccacagatgctgagttttt----gtctcaccattctactaattcc |
17856375 |
T |
 |
Q |
198 |
atctcaca |
205 |
Q |
|
|
|||||||| |
|
|
T |
17856374 |
atctcaca |
17856367 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 10594641 - 10594686
Alignment:
Q |
109 |
atttgttataattaggcagcggccagacaaccgtagagatcgaatc |
154 |
Q |
|
|
||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
T |
10594641 |
atttgttgtaattgggcagcggccagacaaccgtagagatggaatc |
10594686 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 930
Target Start/End: Complemental strand, 36632312 - 36632271
Alignment:
Q |
889 |
ggttaatatgtcttacccctgtaatttgggcaagttccggtt |
930 |
Q |
|
|
|||||||||||||| ||||||||||||||| |||||||||| |
|
|
T |
36632312 |
ggttaatatgtctttaccctgtaatttgggcgagttccggtt |
36632271 |
T |
 |
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