View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4378-Insertion-4 (Length: 963)
Name: NF4378-Insertion-4
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4378-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 381 - 935
Target Start/End: Complemental strand, 18649610 - 18649057
Alignment:
| Q |
381 |
ccgatatttggttactcagttcagatttcagaatgatctacgtatggagagagatatctcggaatcactgtcaatgtgtttcttactaaaagatacaaag |
480 |
Q |
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| T |
18649610 |
ccgatatttggttactcagttcagatttcagaatgatctacgtatggagagagatatctcggaatcactgtcaatgtgtttcttactaaaagatacaaag |
18649511 |
T |
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| Q |
481 |
gttacaagaaatctctacaaacaaactaatttctactcatttcctaatctcttccctttgtcaatagactccaaggtttttactcacccaaagtgtttat |
580 |
Q |
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| T |
18649510 |
gttacaagaaatctctacaaacaaactaatttctactcatttcctaatctcttccctttgtcaatagactccaaggtttttactcacccaaagtgtttat |
18649411 |
T |
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| Q |
581 |
gatgtttctcaacccatgaatctccactaaggacacgcaactgttagcctctatgttttctaaaagttctctattttggtttgacaagattacacaataa |
680 |
Q |
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| T |
18649410 |
gatgtttctcaacccatgaatctccactaaggacacgcaactgttagcctctatgttttctaaaagttctctattttggtttgacaagattacacaataa |
18649311 |
T |
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| Q |
681 |
cgatgaaagaattcttaaatagcagttatgaacccgagcgaatcaccttgtgatcttcaaaaagctctgccatttctagcgattatgggaaattaccttg |
780 |
Q |
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| T |
18649310 |
cgatgaaagaatgcttaaatagcagttatgaacccgagcgaatcaccttgtgatcttcaaaaagctctgccatttctagcgattatgggaaattaccttg |
18649211 |
T |
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| Q |
781 |
caattttgggtcctgagcaaatcgccttgcgatccgaggcgatttttccaggatcaaaccaattccaaacttccaaaataattcctctgatgaaatttga |
880 |
Q |
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| T |
18649210 |
cgattttgggtcctgagcaaatcgccttgcgatccgaggcgatttttccaggatcaaaccaattccaaacttccaaaataattcctctgatgaaatttga |
18649111 |
T |
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| Q |
881 |
aggcacacgcaacaaatgtggnnnnnnnntgttgaaagaatccctaactcataca |
935 |
Q |
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| T |
18649110 |
aggcacacgcaacaaatgtggaaaaaaaatgttgaaagaat-cctaactcataca |
18649057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 18649983 - 18649680
Alignment:
| Q |
8 |
gccatgccatcacagctaagcagacccaaggtctttatttaccaagacttttttgcctagggtgttccaytttccttggagcacttaatgccaatgttag |
107 |
Q |
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| T |
18649983 |
gccatgccatcacagctaagcagacccaaggtctttatttaccaagacttttttgcctagggtgttccattttccttggagcacttaatgccaatgttag |
18649884 |
T |
|
| Q |
108 |
taaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgatttgtttttcgacttaactcc |
207 |
Q |
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| T |
18649883 |
taaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgatttgtttttcgacttaactcc |
18649784 |
T |
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| Q |
208 |
agatattaagtcaataaagtattatatttagagacgggtgtaataactgaaaagtaacaataattttgtaaacaccaacaataatagatctagatctaat |
307 |
Q |
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| T |
18649783 |
agatattaagtcaataaagtattatatttagagacgggtgtaataactgaaaagtaacaataattttgtaaacaccaacaataatagatctagatctaat |
18649684 |
T |
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| Q |
308 |
ctag |
311 |
Q |
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|||| |
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| T |
18649683 |
ctag |
18649680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 677
Target Start/End: Original strand, 26221571 - 26221673
Alignment:
| Q |
575 |
gtttatgatgtttctcaacccatgaatctccactaaggacacgcaactgttagcctctatgttttctaaaagttctctattttggtttgacaagattaca |
674 |
Q |
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|||||| |||||||| ||||||| ||||| | | || ||||||||| | |||||||||| |||||||||||| ||||| |||||||||| ||||||||| |
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| T |
26221571 |
gtttataatgtttcttaacccataaatctactccaaagacacgcaattcttagcctctaagttttctaaaagctctcttatttggtttgataagattaca |
26221670 |
T |
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| Q |
675 |
caa |
677 |
Q |
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| T |
26221671 |
caa |
26221673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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