View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4378-Insertion-4 (Length: 963)

Name: NF4378-Insertion-4
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4378-Insertion-4
NF4378-Insertion-4
[»] chr5 (3 HSPs)
chr5 (381-935)||(18649057-18649610)
chr5 (8-311)||(18649680-18649983)
chr5 (575-677)||(26221571-26221673)


Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 381 - 935
Target Start/End: Complemental strand, 18649610 - 18649057
Alignment:
381 ccgatatttggttactcagttcagatttcagaatgatctacgtatggagagagatatctcggaatcactgtcaatgtgtttcttactaaaagatacaaag 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649610 ccgatatttggttactcagttcagatttcagaatgatctacgtatggagagagatatctcggaatcactgtcaatgtgtttcttactaaaagatacaaag 18649511  T
481 gttacaagaaatctctacaaacaaactaatttctactcatttcctaatctcttccctttgtcaatagactccaaggtttttactcacccaaagtgtttat 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649510 gttacaagaaatctctacaaacaaactaatttctactcatttcctaatctcttccctttgtcaatagactccaaggtttttactcacccaaagtgtttat 18649411  T
581 gatgtttctcaacccatgaatctccactaaggacacgcaactgttagcctctatgttttctaaaagttctctattttggtttgacaagattacacaataa 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649410 gatgtttctcaacccatgaatctccactaaggacacgcaactgttagcctctatgttttctaaaagttctctattttggtttgacaagattacacaataa 18649311  T
681 cgatgaaagaattcttaaatagcagttatgaacccgagcgaatcaccttgtgatcttcaaaaagctctgccatttctagcgattatgggaaattaccttg 780  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649310 cgatgaaagaatgcttaaatagcagttatgaacccgagcgaatcaccttgtgatcttcaaaaagctctgccatttctagcgattatgggaaattaccttg 18649211  T
781 caattttgggtcctgagcaaatcgccttgcgatccgaggcgatttttccaggatcaaaccaattccaaacttccaaaataattcctctgatgaaatttga 880  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649210 cgattttgggtcctgagcaaatcgccttgcgatccgaggcgatttttccaggatcaaaccaattccaaacttccaaaataattcctctgatgaaatttga 18649111  T
881 aggcacacgcaacaaatgtggnnnnnnnntgttgaaagaatccctaactcataca 935  Q
    |||||||||||||||||||||        |||||||||||| |||||||||||||    
18649110 aggcacacgcaacaaatgtggaaaaaaaatgttgaaagaat-cctaactcataca 18649057  T

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Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 18649983 - 18649680
Alignment:
8 gccatgccatcacagctaagcagacccaaggtctttatttaccaagacttttttgcctagggtgttccaytttccttggagcacttaatgccaatgttag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
18649983 gccatgccatcacagctaagcagacccaaggtctttatttaccaagacttttttgcctagggtgttccattttccttggagcacttaatgccaatgttag 18649884  T
108 taaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgatttgtttttcgacttaactcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649883 taaaatattttcccagttgcaaattaagacaagtggtggagagtttgattttggttggaacaattctcgactagactgatttgtttttcgacttaactcc 18649784  T
208 agatattaagtcaataaagtattatatttagagacgggtgtaataactgaaaagtaacaataattttgtaaacaccaacaataatagatctagatctaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18649783 agatattaagtcaataaagtattatatttagagacgggtgtaataactgaaaagtaacaataattttgtaaacaccaacaataatagatctagatctaat 18649684  T
308 ctag 311  Q
    ||||    
18649683 ctag 18649680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 677
Target Start/End: Original strand, 26221571 - 26221673
Alignment:
575 gtttatgatgtttctcaacccatgaatctccactaaggacacgcaactgttagcctctatgttttctaaaagttctctattttggtttgacaagattaca 674  Q
    |||||| |||||||| ||||||| ||||| | | || ||||||||| | |||||||||| |||||||||||| |||||  |||||||||| |||||||||    
26221571 gtttataatgtttcttaacccataaatctactccaaagacacgcaattcttagcctctaagttttctaaaagctctcttatttggtttgataagattaca 26221670  T
675 caa 677  Q
    |||    
26221671 caa 26221673  T

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