View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4378-Insertion-5 (Length: 953)

Name: NF4378-Insertion-5
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4378-Insertion-5
NF4378-Insertion-5
[»] chr1 (7 HSPs)
chr1 (287-751)||(29466514-29466965)
chr1 (751-953)||(29467100-29467300)
chr1 (751-953)||(29452626-29452826)
chr1 (751-953)||(29423888-29424088)
chr1 (751-906)||(29442634-29442789)
chr1 (121-271)||(29466324-29466468)
chr1 (8-112)||(29465263-29465382)
[»] chr2 (12 HSPs)
chr2 (751-951)||(14550996-14551193)
chr2 (751-857)||(8572776-8572882)
chr2 (766-854)||(10372653-10372741)
chr2 (751-854)||(9292699-9292802)
chr2 (751-815)||(10336621-10336685)
chr2 (751-856)||(10353914-10354019)
chr2 (751-814)||(9283449-9283512)
chr2 (751-854)||(9321762-9321865)
chr2 (751-815)||(7114920-7114984)
chr2 (751-877)||(9316770-9316899)
chr2 (751-808)||(10348620-10348677)
chr2 (751-854)||(9060373-9060479)
[»] chr8 (1 HSPs)
chr8 (751-881)||(41965997-41966130)
[»] chr4 (1 HSPs)
chr4 (751-854)||(26575650-26575753)
[»] scaffold0667 (1 HSPs)
scaffold0667 (751-857)||(5227-5333)
[»] chr3 (1 HSPs)
chr3 (751-854)||(37463293-37463396)
[»] chr7 (2 HSPs)
chr7 (398-453)||(1658164-1658219)
chr7 (7-45)||(13334085-13334123)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 287 - 751
Target Start/End: Original strand, 29466514 - 29466965
Alignment:
Q  287 agagattaaaataagttgtatagttacaaaatatttttataacaagaaaacaaaaaatgtttaatagcacttaaattgttgtcggatccgcacgaacttg 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29466514 agagattaaaataagttgtatagttacaaaatatttttataacaa--aaataaaagatgtttaatagcacttaaattgttgttggatccgcacgaacttg 29466611  T
Q  387 tatttcactaaacattatttaagaattttgaacttatttcaattaaaatttaatttagaaaaaggaattaaatatgcataatgtgtcatgtgatttaagg 486  Q
    |||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  29466612 tatttt--------ttatttaagaattttgaacttattttaattaaaatttaatttagaaaaaggaattgagtatgcataatgtgtcatgtggtttaagg 29466703  T
Q  487 gttcttgattgtcgtgcattataataacgcttattttataaacaggttt--------aaaggaaggaagaattcatatctctcnnnnnnnnnnttacaac 578  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||        |||||||| |||||||||||||||||           || ||     
T  29466704 gttcttgattgtcgtgcattataataacacttattttataaacaggtttaaagaaagaaaggaagaaagaattcatatctctcaaaa-------taaaa- 29466795  T
Q  579 cgataatcataattgttaatcggatttgaatctccatttctcatttatgtgcgtgagttttcaatgactgttatcatttcgtcgttaaacgcaa-----a 673  Q
      || ||||||||||||||| | |||| |||||| |||| ||||||||||  |||||||||||||| || |||| ||||| || | |||| |||     |    
T  29466796 --at-atcataattgttaattgaatttaaatctcaatttttcatttatgtatgtgagttttcaatggctattattatttcctcctaaaacacaaggtgga 29466892  T
Q  674 agttggattgcatttggtttgtagaaagaaagaaagaaaggcggggaaaattgagaggttggttgcatttgtgtcata 751  Q
    || ||||||||||||| |||||    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  29466893 ag-tggattgcatttgatttgt----agaaagaaagaaaggcgggaaaaattgagaggttggttgcatttgtgacata 29466965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 751 - 953
Target Start/End: Original strand, 29467100 - 29467300
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467100 aatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 29467199  T
Q  851 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg 950  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  29467200 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaac-ttcatctct-ctgttcggttcatgtaacg 29467297  T
Q  951 gcc 953  Q
    |||    
T  29467298 gcc 29467300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 751 - 953
Target Start/End: Original strand, 29452626 - 29452826
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  29452626 aatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttcta 29452725  T
Q  851 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg 950  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||| ||||||||||||    
T  29452726 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaac-aacatctct-ctgttcagttcatgtaacg 29452823  T
Q  951 gcc 953  Q
    |||    
T  29452824 gcc 29452826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 751 - 953
Target Start/End: Complemental strand, 29424088 - 29423888
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    ||||||||||||| ||||||||||||||||  |||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  29424088 aatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttcta 29423989  T
Q  851 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg 950  Q
    ||||||||||||||||||||||||||| |||  | |||||||||||| ||||||||||  | |||||||| ||||||||| ||| |||| ||||||||||    
T  29423988 ccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctttcaaaggctccaacaac-ttcatctct-ctggtcggatcatgtaacg 29423891  T
Q  951 gcc 953  Q
    |||    
T  29423890 gcc 29423888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 751 - 906
Target Start/End: Original strand, 29442634 - 29442789
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  29442634 aatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttcta 29442733  T
Q  851 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttca 906  Q
    ||||||| | ||||||||||||||||||||| || ||||||||||  |||||||||    
T  29442734 ccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattcctttca 29442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 29466324 - 29466468
Alignment:
Q  121 gtggtaatcttgtgtatatgtggcaaaaatgagatgacatgtcaagtagtctaattcaataaagtgtttatagagtcttctaatctttatcctaaaaata 220  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||     |||||||| ||||||||||||||||||| ||||||     
T  29466324 gtggtaatcttgtgtatatgtggcaaaaatgaggtgacatgtgaagtagtctaattcaa-----tgtttatacagtcttctaatctttatccaaaaaat- 29466417  T
Q  221 aaaagaaagagtttattttttgataatcttatttcgactaataataaaagt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29466418 aaaagaaagagtttattttttgataatcttatttcgactaataataaaagt 29466468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 29465263 - 29465382
Alignment:
Q  8 aaatgaaccaagcagataattgtcactagctcttgctc---------------ccctaatcaagacgctgcactggttatcccatagtactttactggat 92  Q
    ||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||| |||||    
T  29465263 aaatgaaccaagcagataattgtcactagctcttgctctctcaccctcatataccctaatcaagacgctgcactggttatcccatagtactttagtggat 29465362  T
Q  93 aaaactttactggtacctta 112  Q
    ||||||||||||||||||||    
T  29465363 aaaactttactggtacctta 29465382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 7e-64; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 751 - 951
Target Start/End: Complemental strand, 14551193 - 14550996
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| ||| |||||||||||||||||| ||| || ||||    
T  14551193 aatcacttcaatccctaatcgattcccacaacttcatcaaacttcaccta-aaaattccctcaattgttccttaatccttcgacacaagtccaatctcta 14551095  T
Q  851 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg 950  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  ||||||| ||||||||| ||| |||||||||||||||    
T  14551094 ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcgaaggcttcaacaac-ttcatctct-ctgctcggttcatgtaacg 14550997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 751 - 857
Target Start/End: Original strand, 8572776 - 8572882
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||| ||||  |||||||||||||||| |||| ||| ||||||||| |||||||||||||||||| ||||||| |||||| ||||| |||| ||||    
T  8572776 aatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatcta 8572875  T
Q  851 ccaaatc 857  Q
    |||||||    
T  8572876 ccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 766 - 854
Target Start/End: Complemental strand, 10372741 - 10372653
Alignment:
Q  766 taatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 854  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| || ||| | |||| ||||||||    
T  10372741 taatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaa 10372653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 9292802 - 9292699
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||| |||||||||||||||| ||||  ||||  || ||||||||| ||||||||||||| || | |||||||||||||||||| | |||| ||||    
T  9292802 aatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctcta 9292703  T
Q  851 ccaa 854  Q
    ||||    
T  9292702 ccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 751 - 815
Target Start/End: Complemental strand, 10336685 - 10336621
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaat 815  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  10336685 aatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 751 - 856
Target Start/End: Complemental strand, 10354019 - 10353914
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    ||||| || ||||||||||||||||| ||||||||||||| |||||||||  |||||||| |||||  | |||||| ||||||  ||| | |||| ||||    
T  10354019 aatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatcta 10353920  T
Q  851 ccaaat 856  Q
    ||||||    
T  10353919 ccaaat 10353914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 751 - 814
Target Start/End: Original strand, 9283449 - 9283512
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaa 814  Q
    ||||||||| ||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||    
T  9283449 aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 9321865 - 9321762
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||| ||||| |||||||||| ||| | |||||||| ||||| ||| |||||||||||| ||| | ||||||| ||| |||||| | |||| ||||    
T  9321865 aatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctcta 9321766  T
Q  851 ccaa 854  Q
    ||||    
T  9321765 ccaa 9321762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 815
Target Start/End: Original strand, 7114920 - 7114984
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaat 815  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||| ||  |||||||| |||||    
T  7114920 aatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 751 - 877
Target Start/End: Complemental strand, 9316899 - 9316770
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaat---tccctcaatcgtttcttaatccttcgacacaactccgattt 847  Q
    |||||||| ||||  |||| ||||| ||||| |||||||| ||||||||| |||||   ||||||||||| | |||||||||||   |||| |||||  |    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  848 ctaccaaatcaacgatttctctaacctaac 877  Q
    |||||||||| | |||||| || |||||||    
T  9316799 ctaccaaatcgatgatttccctgacctaac 9316770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 751 - 808
Target Start/End: Complemental strand, 10348677 - 10348620
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattc 808  Q
    |||||||| ||||| |||||||||||| |||||||||||| ||||||||  |||||||    
T  10348677 aatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 751 - 854
Target Start/End: Original strand, 9060373 - 9060479
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaatt---ccctcaatcgtttcttaatccttcgacacaactccgattt 847  Q
    |||||||| ||||| |||||||||| ||||| ||||  || ||| ||||| |||||    |||||||||| ||  |||||||||||||||| |||||| |    
T  9060373 aatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatct 9060472  T
Q  848 ctaccaa 854  Q
    |||||||    
T  9060473 ctaccaa 9060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 751 - 881
Target Start/End: Original strand, 41965997 - 41966130
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    ||||||||| |||| |||||||||||||||| |||||||| |||||||||  ||| ||||||||||| | |||||||||||||| |||| | ||| ||||    
T  41965997 aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatctcta 41966096  T
Q  851 ccaaatc---aacgatttctctaacctaaccacc 881  Q
    |||  ||    | |||||||||||||||||||||    
T  41966097 ccagttcgatgaggatttctctaacctaaccacc 41966130  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 26575753 - 26575650
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||| ||| | ||||||||||| ||||||||||||| |||||||||  |||||||| |||||| | |||||||||||||  ||| | |||| ||||    
T  26575753 aatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatcta 26575654  T
Q  851 ccaa 854  Q
    ||||    
T  26575653 ccaa 26575650  T

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Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 751 - 857
Target Start/End: Complemental strand, 5333 - 5227
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||| ||||| |||||||||| ||||| |||||||| ||||||| | |||||||||||||| | | ||| |||||||||| ||  ||| || ||||    
T  5333 aatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcgactcagatccaatatcta 5234  T
Q  851 ccaaatc 857  Q
    |||||||    
T  5233 ccaaatc 5227  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 37463396 - 37463293
Alignment:
Q  751 aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta 850  Q
    |||||||| ||||  |||||||||| ||||| |||||||| ||||| ||| ||||| |||||||||  | | ||||| ||||| ||||||||||| ||||    
T  37463396 aatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatcta 37463297  T
Q  851 ccaa 854  Q
    ||||    
T  37463296 ccaa 37463293  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 1658219 - 1658164
Alignment:
Q  398 acattatttaagaattttgaacttatttcaattaaaatttaatttagaaaaaggaa 453  Q
    ||||||||| | ||||||| | |||||| ||||||||||||||||||||| |||||    
T  1658219 acattattttaaaattttggatttattttaattaaaatttaatttagaaataggaa 1658164  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 13334123 - 13334085
Alignment:
Q  7 aaaatgaaccaagcagataattgtcactagctcttgctc 45  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  13334123 aaaatgaaccaagtagattattgtcactagctcttgctc 13334085  T

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