View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4378-Insertion-5 (Length: 953)
Name: NF4378-Insertion-5
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4378-Insertion-5 |
 |  |
|
[»] scaffold0667 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 287 - 751
Target Start/End: Original strand, 29466514 - 29466965
Alignment:
Q |
287 |
agagattaaaataagttgtatagttacaaaatatttttataacaagaaaacaaaaaatgtttaatagcacttaaattgttgtcggatccgcacgaacttg |
386 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
T |
29466514 |
agagattaaaataagttgtatagttacaaaatatttttataacaa--aaataaaagatgtttaatagcacttaaattgttgttggatccgcacgaacttg |
29466611 |
T |
 |
Q |
387 |
tatttcactaaacattatttaagaattttgaacttatttcaattaaaatttaatttagaaaaaggaattaaatatgcataatgtgtcatgtgatttaagg |
486 |
Q |
|
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
T |
29466612 |
tatttt--------ttatttaagaattttgaacttattttaattaaaatttaatttagaaaaaggaattgagtatgcataatgtgtcatgtggtttaagg |
29466703 |
T |
 |
Q |
487 |
gttcttgattgtcgtgcattataataacgcttattttataaacaggttt--------aaaggaaggaagaattcatatctctcnnnnnnnnnnttacaac |
578 |
Q |
|
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || |
|
|
T |
29466704 |
gttcttgattgtcgtgcattataataacacttattttataaacaggtttaaagaaagaaaggaagaaagaattcatatctctcaaaa-------taaaa- |
29466795 |
T |
 |
Q |
579 |
cgataatcataattgttaatcggatttgaatctccatttctcatttatgtgcgtgagttttcaatgactgttatcatttcgtcgttaaacgcaa-----a |
673 |
Q |
|
|
|| ||||||||||||||| | |||| |||||| |||| |||||||||| |||||||||||||| || |||| ||||| || | |||| ||| | |
|
|
T |
29466796 |
--at-atcataattgttaattgaatttaaatctcaatttttcatttatgtatgtgagttttcaatggctattattatttcctcctaaaacacaaggtgga |
29466892 |
T |
 |
Q |
674 |
agttggattgcatttggtttgtagaaagaaagaaagaaaggcggggaaaattgagaggttggttgcatttgtgtcata |
751 |
Q |
|
|
|| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
T |
29466893 |
ag-tggattgcatttgatttgt----agaaagaaagaaaggcgggaaaaattgagaggttggttgcatttgtgacata |
29466965 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 751 - 953
Target Start/End: Original strand, 29467100 - 29467300
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29467100 |
aatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
29467199 |
T |
 |
Q |
851 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg |
950 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
T |
29467200 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaac-ttcatctct-ctgttcggttcatgtaacg |
29467297 |
T |
 |
Q |
951 |
gcc |
953 |
Q |
|
|
||| |
|
|
T |
29467298 |
gcc |
29467300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 751 - 953
Target Start/End: Original strand, 29452626 - 29452826
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |
|
|
T |
29452626 |
aatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttcta |
29452725 |
T |
 |
Q |
851 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg |
950 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||| |
|
|
T |
29452726 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaactccccaacaac-aacatctct-ctgttcagttcatgtaacg |
29452823 |
T |
 |
Q |
951 |
gcc |
953 |
Q |
|
|
||| |
|
|
T |
29452824 |
gcc |
29452826 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 751 - 953
Target Start/End: Complemental strand, 29424088 - 29423888
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||| |
|
|
T |
29424088 |
aatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttcta |
29423989 |
T |
 |
Q |
851 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg |
950 |
Q |
|
|
||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||| | |||||||| ||||||||| ||| |||| |||||||||| |
|
|
T |
29423988 |
ccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctttcaaaggctccaacaac-ttcatctct-ctggtcggatcatgtaacg |
29423891 |
T |
 |
Q |
951 |
gcc |
953 |
Q |
|
|
||| |
|
|
T |
29423890 |
gcc |
29423888 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 751 - 906
Target Start/End: Original strand, 29442634 - 29442789
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
|
|
T |
29442634 |
aatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttcta |
29442733 |
T |
 |
Q |
851 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttca |
906 |
Q |
|
|
||||||| | ||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
T |
29442734 |
ccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattcctttca |
29442789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 29466324 - 29466468
Alignment:
Q |
121 |
gtggtaatcttgtgtatatgtggcaaaaatgagatgacatgtcaagtagtctaattcaataaagtgtttatagagtcttctaatctttatcctaaaaata |
220 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
T |
29466324 |
gtggtaatcttgtgtatatgtggcaaaaatgaggtgacatgtgaagtagtctaattcaa-----tgtttatacagtcttctaatctttatccaaaaaat- |
29466417 |
T |
 |
Q |
221 |
aaaagaaagagtttattttttgataatcttatttcgactaataataaaagt |
271 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29466418 |
aaaagaaagagtttattttttgataatcttatttcgactaataataaaagt |
29466468 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 29465263 - 29465382
Alignment:
Q |
8 |
aaatgaaccaagcagataattgtcactagctcttgctc---------------ccctaatcaagacgctgcactggttatcccatagtactttactggat |
92 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
T |
29465263 |
aaatgaaccaagcagataattgtcactagctcttgctctctcaccctcatataccctaatcaagacgctgcactggttatcccatagtactttagtggat |
29465362 |
T |
 |
Q |
93 |
aaaactttactggtacctta |
112 |
Q |
|
|
|||||||||||||||||||| |
|
|
T |
29465363 |
aaaactttactggtacctta |
29465382 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 7e-64; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 751 - 951
Target Start/End: Complemental strand, 14551193 - 14550996
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||| || |||| |
|
|
T |
14551193 |
aatcacttcaatccctaatcgattcccacaacttcatcaaacttcaccta-aaaattccctcaattgttccttaatccttcgacacaagtccaatctcta |
14551095 |
T |
 |
Q |
851 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcaaaatccccaacaactttcatctctcctgttcggttcatgtaacg |
950 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||||| ||| ||||||||||||||| |
|
|
T |
14551094 |
ccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctttcgaaggcttcaacaac-ttcatctct-ctgctcggttcatgtaacg |
14550997 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 751 - 857
Target Start/End: Original strand, 8572776 - 8572882
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||| |||| |||||||||||||||| |||| ||| ||||||||| |||||||||||||||||| ||||||| |||||| ||||| |||| |||| |
|
|
T |
8572776 |
aatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatcta |
8572875 |
T |
 |
Q |
851 |
ccaaatc |
857 |
Q |
|
|
||||||| |
|
|
T |
8572876 |
ccaaatc |
8572882 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 766 - 854
Target Start/End: Complemental strand, 10372741 - 10372653
Alignment:
Q |
766 |
taatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa |
854 |
Q |
|
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| || ||| | |||| |||||||| |
|
|
T |
10372741 |
taatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaa |
10372653 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 9292802 - 9292699
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||| |||||||||||||||| |||| |||| || ||||||||| ||||||||||||| || | |||||||||||||||||| | |||| |||| |
|
|
T |
9292802 |
aatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctcta |
9292703 |
T |
 |
Q |
851 |
ccaa |
854 |
Q |
|
|
|||| |
|
|
T |
9292702 |
ccaa |
9292699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 751 - 815
Target Start/End: Complemental strand, 10336685 - 10336621
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaat |
815 |
Q |
|
|
|||||||| ||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
T |
10336685 |
aatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat |
10336621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 751 - 856
Target Start/End: Complemental strand, 10354019 - 10353914
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
||||| || ||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||| | |||||| |||||| ||| | |||| |||| |
|
|
T |
10354019 |
aatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatcta |
10353920 |
T |
 |
Q |
851 |
ccaaat |
856 |
Q |
|
|
|||||| |
|
|
T |
10353919 |
ccaaat |
10353914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 751 - 814
Target Start/End: Original strand, 9283449 - 9283512
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaa |
814 |
Q |
|
|
||||||||| ||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||| |
|
|
T |
9283449 |
aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa |
9283512 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 9321865 - 9321762
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||| ||||| |||||||||| ||| | |||||||| ||||| ||| |||||||||||| ||| | ||||||| ||| |||||| | |||| |||| |
|
|
T |
9321865 |
aatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctcta |
9321766 |
T |
 |
Q |
851 |
ccaa |
854 |
Q |
|
|
|||| |
|
|
T |
9321765 |
ccaa |
9321762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 815
Target Start/End: Original strand, 7114920 - 7114984
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaat |
815 |
Q |
|
|
|||||||| ||||| ||||||||||||||||||||||||| ||||| || |||||||| ||||| |
|
|
T |
7114920 |
aatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat |
7114984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 751 - 877
Target Start/End: Complemental strand, 9316899 - 9316770
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaat---tccctcaatcgtttcttaatccttcgacacaactccgattt |
847 |
Q |
|
|
|||||||| |||| |||| ||||| ||||| |||||||| ||||||||| ||||| ||||||||||| | ||||||||||| |||| ||||| | |
|
|
T |
9316899 |
aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact |
9316800 |
T |
 |
Q |
848 |
ctaccaaatcaacgatttctctaacctaac |
877 |
Q |
|
|
|||||||||| | |||||| || ||||||| |
|
|
T |
9316799 |
ctaccaaatcgatgatttccctgacctaac |
9316770 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 751 - 808
Target Start/End: Complemental strand, 10348677 - 10348620
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattc |
808 |
Q |
|
|
|||||||| ||||| |||||||||||| |||||||||||| |||||||| ||||||| |
|
|
T |
10348677 |
aatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc |
10348620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 751 - 854
Target Start/End: Original strand, 9060373 - 9060479
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaatt---ccctcaatcgtttcttaatccttcgacacaactccgattt |
847 |
Q |
|
|
|||||||| ||||| |||||||||| ||||| |||| || ||| ||||| ||||| |||||||||| || |||||||||||||||| |||||| | |
|
|
T |
9060373 |
aatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatct |
9060472 |
T |
 |
Q |
848 |
ctaccaa |
854 |
Q |
|
|
||||||| |
|
|
T |
9060473 |
ctaccaa |
9060479 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 751 - 881
Target Start/End: Original strand, 41965997 - 41966130
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
||||||||| |||| |||||||||||||||| |||||||| ||||||||| ||| ||||||||||| | |||||||||||||| |||| | ||| |||| |
|
|
T |
41965997 |
aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatctcta |
41966096 |
T |
 |
Q |
851 |
ccaaatc---aacgatttctctaacctaaccacc |
881 |
Q |
|
|
||| || | ||||||||||||||||||||| |
|
|
T |
41966097 |
ccagttcgatgaggatttctctaacctaaccacc |
41966130 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 26575753 - 26575650
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||| ||| | ||||||||||| ||||||||||||| ||||||||| |||||||| |||||| | ||||||||||||| ||| | |||| |||| |
|
|
T |
26575753 |
aatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatcta |
26575654 |
T |
 |
Q |
851 |
ccaa |
854 |
Q |
|
|
|||| |
|
|
T |
26575653 |
ccaa |
26575650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 751 - 857
Target Start/End: Complemental strand, 5333 - 5227
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||| ||||| |||||||||| ||||| |||||||| ||||||| | |||||||||||||| | | ||| |||||||||| || ||| || |||| |
|
|
T |
5333 |
aatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcgactcagatccaatatcta |
5234 |
T |
 |
Q |
851 |
ccaaatc |
857 |
Q |
|
|
||||||| |
|
|
T |
5233 |
ccaaatc |
5227 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 751 - 854
Target Start/End: Complemental strand, 37463396 - 37463293
Alignment:
Q |
751 |
aatcacttcaatccctaatcgattcccacaaattcatcaaacttcacctccaaaattccctcaatcgtttcttaatccttcgacacaactccgatttcta |
850 |
Q |
|
|
|||||||| |||| |||||||||| ||||| |||||||| ||||| ||| ||||| ||||||||| | | ||||| ||||| ||||||||||| |||| |
|
|
T |
37463396 |
aatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatcta |
37463297 |
T |
 |
Q |
851 |
ccaa |
854 |
Q |
|
|
|||| |
|
|
T |
37463296 |
ccaa |
37463293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 1658219 - 1658164
Alignment:
Q |
398 |
acattatttaagaattttgaacttatttcaattaaaatttaatttagaaaaaggaa |
453 |
Q |
|
|
||||||||| | ||||||| | |||||| ||||||||||||||||||||| ||||| |
|
|
T |
1658219 |
acattattttaaaattttggatttattttaattaaaatttaatttagaaataggaa |
1658164 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 13334123 - 13334085
Alignment:
Q |
7 |
aaaatgaaccaagcagataattgtcactagctcttgctc |
45 |
Q |
|
|
||||||||||||| |||| |||||||||||||||||||| |
|
|
T |
13334123 |
aaaatgaaccaagtagattattgtcactagctcttgctc |
13334085 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University