View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4378-Insertion-7 (Length: 641)
Name: NF4378-Insertion-7
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4378-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Original strand, 757708 - 758341
Alignment:
| Q |
8 |
acttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757708 |
acttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatca |
757807 |
T |
|
| Q |
108 |
agcaaaaaccatcgttgtgataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatccc |
207 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757808 |
agcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatccc |
757907 |
T |
|
| Q |
208 |
ctaaaacaataaactctggaccaaatagcaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaa |
307 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757908 |
ttaaaacaataaactgtggaccaaatagtaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaa |
758007 |
T |
|
| Q |
308 |
caaagttcaatgcaacattaatttgtcnnnnnnnnnnnnngaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaag |
407 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758008 |
caaagttcaatgcaacattaatttatcaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaag |
758107 |
T |
|
| Q |
408 |
ctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758108 |
ctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattg |
758207 |
T |
|
| Q |
508 |
aaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacaggaggtccttg |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758208 |
aaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacaggaggtccttg |
758307 |
T |
|
| Q |
608 |
tttgctactgttctttagtatttgtcctcttcca |
641 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
758308 |
tttgctactgttctttagtatttgtcctcttcca |
758341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Complemental strand, 36989668 - 36989030
Alignment:
| Q |
8 |
acttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36989668 |
acttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacatcactgaaatca |
36989569 |
T |
|
| Q |
108 |
agcaaaaaccatcgttgtgataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatccc |
207 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989568 |
agcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatccc |
36989469 |
T |
|
| Q |
208 |
ctaaaacaataaactctggaccaaatagcaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaa |
307 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989468 |
ttaaaacaataaactgtggaccaaatagtaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaa |
36989369 |
T |
|
| Q |
308 |
caaagttcaatgcaacattaatttgt-----cnnnnnnnnnnnnngaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989368 |
caaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttcc |
36989269 |
T |
|
| Q |
403 |
acaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaa |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36989268 |
acaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaa |
36989169 |
T |
|
| Q |
503 |
aattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacaggaggt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36989168 |
aattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacaggaggt |
36989069 |
T |
|
| Q |
603 |
ccttgtttgctactgttctttagtatttgtcctcttcca |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36989068 |
ccttgtttgctactgttctttagtatttgtcctcttcca |
36989030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Complemental strand, 37015108 - 37014469
Alignment:
| Q |
8 |
acttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
37015108 |
acttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacagcactgaaatca |
37015009 |
T |
|
| Q |
108 |
agcaaaaaccatcgttgtgataggacaaataataacagtataca-tggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatcc |
206 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37015008 |
agcaaaaaccattgttgttataggacaaataataacagtatacaattgaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatcc |
37014909 |
T |
|
| Q |
207 |
cctaaaacaataaactctggaccaaatagcaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataa |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014908 |
cctaaaacaataaactgtggaccaaatagtaataacagactcacagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataa |
37014809 |
T |
|
| Q |
307 |
acaaagttcaatgcaacattaatttgtcnnnnnnnnnnnnn-----gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014808 |
acaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttc |
37014709 |
T |
|
| Q |
402 |
cacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtaccta |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014708 |
cacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtaccta |
37014609 |
T |
|
| Q |
502 |
aaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacaggagg |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014608 |
aaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacaggagg |
37014509 |
T |
|
| Q |
602 |
tccttgtttgctactgttctttagtatttgtcctcttcca |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014508 |
tccttgtttgctactgttctttagtatttgtcctcttcca |
37014469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 39160937 - 39160861
Alignment:
| Q |
59 |
tagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaaaaaccatcgttgtgataggacaa |
135 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| |||||||||||||||||| | ||| ||||| | ||||||| |
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|
| T |
39160937 |
tagatttgtgctaagaccaaaaaacgtgttgaaaatgacactgaaatcaagcaaacaacattgttgttacaggacaa |
39160861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 32898595 - 32898567
Alignment:
| Q |
169 |
catgacttcatgtgacatatatacttaca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32898595 |
catgacttcatgtgacatatatacttaca |
32898567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 36874824 - 36874876
Alignment:
| Q |
61 |
gatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaaa |
113 |
Q |
| |
|
||||||| || ||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
36874824 |
gatttgttctgagaccaaacaacgtgttgaaaacgacactgaaatcaagcaaa |
36874876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 19179948 - 19180126
Alignment:
| Q |
53 |
atgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaaaaaccatcgttgtgataggacaaataataacagtatacat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||| || ||| |||||||||||||||| | |
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|
| T |
19179948 |
atgccgtagatttgtgctaagaccaaacaatatgttgaaaacgacgctgaaatcaagcaaaaaccattgttgttattggagaaataataacagtatagtt |
19180047 |
T |
|
| Q |
153 |
ggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatcccctaaaacaataaactctggaccaa |
231 |
Q |
| |
|
||||||||| ||||||| ||| ||||| |||||||||| ||||| ||||||| |||| || | ||||| |||||||| |
|
|
| T |
19180048 |
tgaaggcaaagaaaaacacgacctcatgcgacatatatagttacatcgtgatctcctataaaatgaaactgtggaccaa |
19180126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 484 - 577
Target Start/End: Original strand, 19180800 - 19180896
Alignment:
| Q |
484 |
ggcacattttggtacctaaaattgaaat---ggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgat |
577 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |
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|
| T |
19180800 |
ggcacattttggtaactaagattgaaatattggaagcttttgtaagaaactttaattaacttgagacaacaattgtgcttaagactttgaatttgat |
19180896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 19180180 - 19180230
Alignment:
| Q |
245 |
actcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacat |
296 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
19180180 |
actcacagtatataaatcaaa-tgattaaatgtttgatatgataaagtacat |
19180230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 31824792 - 31824739
Alignment:
| Q |
59 |
tagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
31824792 |
tagatttgtgctaagaccaaacaacgtgttcaaaacgacactgaaatcaagcaa |
31824739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 32116910 - 32116878
Alignment:
| Q |
59 |
tagatttgtgctaagaccaaacaatatgtagaa |
91 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
32116910 |
tagatttgtgctaagaccaaacaatgtgtagaa |
32116878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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