View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4378-Insertion-9 (Length: 606)
Name: NF4378-Insertion-9
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4378-Insertion-9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Complemental strand, 41689825 - 41689227
Alignment:
| Q |
8 |
ctaactgtgttgtttccgagtaaggacatttattcatgcaacttaattttcttttttgtatatttcagttggaatcataatttattttgttaattgcttg |
107 |
Q |
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| T |
41689825 |
ctaactgtattgtttccgagtaaggacatttattaatgcaacttaattttcttttttgtatatttcagttggaatcataatttattttgttaattgcttg |
41689726 |
T |
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| Q |
108 |
tgtgtggtgtatgtgtatctatctgctgtagcagcatcttgatgaaattaataaaatcaaatatactgtatagtttagttaaattctactgtgtcttcat |
207 |
Q |
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| T |
41689725 |
tgtgtggtgtatgtgtatctatctgctgtagcagcatcttgatgagattaataaaatcaaatatactttatagtttagttaaattctactgtgtcttcat |
41689626 |
T |
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| Q |
208 |
tcattgttgtttatttacgcagcaatgcaatgatgacgaataagaagctcaatcacgatcttcaaatggagaccgttagcactcgactgccattgcccgt |
307 |
Q |
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| T |
41689625 |
tcattgttgtttatttacgcagcaatgcaatgatgacgaataagaagctcaatcacgatcttcaaatggagaccgttagcactcgactgccattgcctgt |
41689526 |
T |
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| Q |
308 |
cttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca |
407 |
Q |
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| T |
41689525 |
cttgccggaagaactcatccttgagatcctcctcagacttctggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca |
41689426 |
T |
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| Q |
408 |
accgctgaaccaagcttgaaccaccaacaattgcttgtttccaatatatgtgaactcaacaactgcaggatctattcttaccctttaagccattgttcga |
507 |
Q |
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| T |
41689425 |
accgctgagccaagcttgaaccaccaacaattgcttgtttccaatatatgtgaactcaacaactgcaggatctattcttaccctttaagccattgttcga |
41689326 |
T |
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| Q |
508 |
aaactcattaacctgtgttgaacctggtagcttcacagtcactacgtctcgcaatattctaggttcatgcaatgggttgttgtgtatgtatattagctc |
606 |
Q |
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| T |
41689325 |
aaactcattaacccgtgttgaacctggtagcttcacagtcactacgtctcgcaatattctaggttcatgctatgggttgttgtgtatgtatattagctc |
41689227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 186 - 407
Target Start/End: Complemental strand, 41682374 - 41682163
Alignment:
| Q |
186 |
ttaaattctactgtgtcttcattcattgttgtttatttacgcagcaatgcaatgatgacgaataagaagctcaatcacgatcttcaaatggagaccgtta |
285 |
Q |
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| T |
41682374 |
ttaaattctgctgtgtttccattcattattgtttatgaa-gcagcaatggaatgatgagaagtaagaagctcaatcacgatcttccaatgga-actg--- |
41682280 |
T |
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| Q |
286 |
gcactcgactgccattgcccgtcttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaa |
385 |
Q |
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| T |
41682279 |
-----ccattgccattgcctgtcttgccggaagaactcatccttgagatcctcctcagacttccagtgacttccctccttcaatttatgtgcgtgtccaa |
41682185 |
T |
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| Q |
386 |
atcatggaaaaccctaatctca |
407 |
Q |
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| T |
41682184 |
atcatggaaaaccctaatctca |
41682163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 530
Target Start/End: Complemental strand, 41682083 - 41682029
Alignment:
| Q |
477 |
atctattcttacccttt-aagccattgttcgaaaactcattaacctgtgttgaac |
530 |
Q |
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| T |
41682083 |
atctattcttaccctttgaagccattgttcgaaaactcattgacccgtgttgaac |
41682029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 407
Target Start/End: Complemental strand, 45096245 - 45096147
Alignment:
| Q |
309 |
ttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca |
407 |
Q |
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| T |
45096245 |
ttgccggaagaactcatcgtggaaatcctcctccgactttcggtgaaatctctccttcaatacaagtgtgtgtgcaaaacctggaaaaccctactctca |
45096147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 44669486 - 44669426
Alignment:
| Q |
310 |
tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatt |
370 |
Q |
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| T |
44669486 |
tgccggaagaaatcatcgttgagatactccttcgacttccggtgagatccctccttcaatt |
44669426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 44688762 - 44688702
Alignment:
| Q |
310 |
tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatt |
370 |
Q |
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| T |
44688762 |
tgccggaagaaatcatcgttgagatactccttcgacttccggtgagatccctccttcaatt |
44688702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 406
Target Start/End: Complemental strand, 44005579 - 44005483
Alignment:
| Q |
310 |
tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctc |
406 |
Q |
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| T |
44005579 |
tgccggaagaactcatcgttgatatccttttgaagcttccggtgagatccctccttcaatgtaagtgcgtttgcaaatcttggaaaaccctaatctc |
44005483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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