View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4378-Insertion-9 (Length: 606)

Name: NF4378-Insertion-9
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4378-Insertion-9
NF4378-Insertion-9
[»] chr7 (3 HSPs)
chr7 (8-606)||(41689227-41689825)
chr7 (186-407)||(41682163-41682374)
chr7 (477-530)||(41682029-41682083)
[»] chr4 (3 HSPs)
chr4 (309-407)||(45096147-45096245)
chr4 (310-370)||(44669426-44669486)
chr4 (310-370)||(44688702-44688762)
[»] chr1 (1 HSPs)
chr1 (310-406)||(44005483-44005579)


Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Complemental strand, 41689825 - 41689227
Alignment:
8 ctaactgtgttgtttccgagtaaggacatttattcatgcaacttaattttcttttttgtatatttcagttggaatcataatttattttgttaattgcttg 107  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41689825 ctaactgtattgtttccgagtaaggacatttattaatgcaacttaattttcttttttgtatatttcagttggaatcataatttattttgttaattgcttg 41689726  T
108 tgtgtggtgtatgtgtatctatctgctgtagcagcatcttgatgaaattaataaaatcaaatatactgtatagtttagttaaattctactgtgtcttcat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
41689725 tgtgtggtgtatgtgtatctatctgctgtagcagcatcttgatgagattaataaaatcaaatatactttatagtttagttaaattctactgtgtcttcat 41689626  T
208 tcattgttgtttatttacgcagcaatgcaatgatgacgaataagaagctcaatcacgatcttcaaatggagaccgttagcactcgactgccattgcccgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
41689625 tcattgttgtttatttacgcagcaatgcaatgatgacgaataagaagctcaatcacgatcttcaaatggagaccgttagcactcgactgccattgcctgt 41689526  T
308 cttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca 407  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41689525 cttgccggaagaactcatccttgagatcctcctcagacttctggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca 41689426  T
408 accgctgaaccaagcttgaaccaccaacaattgcttgtttccaatatatgtgaactcaacaactgcaggatctattcttaccctttaagccattgttcga 507  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41689425 accgctgagccaagcttgaaccaccaacaattgcttgtttccaatatatgtgaactcaacaactgcaggatctattcttaccctttaagccattgttcga 41689326  T
508 aaactcattaacctgtgttgaacctggtagcttcacagtcactacgtctcgcaatattctaggttcatgcaatgggttgttgtgtatgtatattagctc 606  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
41689325 aaactcattaacccgtgttgaacctggtagcttcacagtcactacgtctcgcaatattctaggttcatgctatgggttgttgtgtatgtatattagctc 41689227  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 186 - 407
Target Start/End: Complemental strand, 41682374 - 41682163
Alignment:
186 ttaaattctactgtgtcttcattcattgttgtttatttacgcagcaatgcaatgatgacgaataagaagctcaatcacgatcttcaaatggagaccgtta 285  Q
    ||||||||| |||||| | |||||||| ||||||||  | ||||||||| ||||||||  | ||||||||||||||||||||||| |||||| || |       
41682374 ttaaattctgctgtgtttccattcattattgtttatgaa-gcagcaatggaatgatgagaagtaagaagctcaatcacgatcttccaatgga-actg--- 41682280  T
286 gcactcgactgccattgcccgtcttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaa 385  Q
         | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||    
41682279 -----ccattgccattgcctgtcttgccggaagaactcatccttgagatcctcctcagacttccagtgacttccctccttcaatttatgtgcgtgtccaa 41682185  T
386 atcatggaaaaccctaatctca 407  Q
    ||||||||||||||||||||||    
41682184 atcatggaaaaccctaatctca 41682163  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 530
Target Start/End: Complemental strand, 41682083 - 41682029
Alignment:
477 atctattcttacccttt-aagccattgttcgaaaactcattaacctgtgttgaac 530  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
41682083 atctattcttaccctttgaagccattgttcgaaaactcattgacccgtgttgaac 41682029  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 407
Target Start/End: Complemental strand, 45096245 - 45096147
Alignment:
309 ttgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctca 407  Q
    |||||||||||||||||| | || ||||||||| ||||| ||||||  || ||| ||||||  | ||||| || |||| | |||||||||||| |||||    
45096245 ttgccggaagaactcatcgtggaaatcctcctccgactttcggtgaaatctctccttcaatacaagtgtgtgtgcaaaacctggaaaaccctactctca 45096147  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 44669486 - 44669426
Alignment:
310 tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatt 370  Q
    ||||||||||| ||||| ||||||| |||||  ||||||||||||  |||||| |||||||    
44669486 tgccggaagaaatcatcgttgagatactccttcgacttccggtgagatccctccttcaatt 44669426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 44688762 - 44688702
Alignment:
310 tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatt 370  Q
    ||||||||||| ||||| ||||||| |||||  ||||||||||||  |||||| |||||||    
44688762 tgccggaagaaatcatcgttgagatactccttcgacttccggtgagatccctccttcaatt 44688702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 406
Target Start/End: Complemental strand, 44005579 - 44005483
Alignment:
310 tgccggaagaactcatccttgagatcctcctcagacttccggtgacttccctctttcaatttatgtgtgcgtccaaatcatggaaaaccctaatctc 406  Q
    ||||||||||||||||| |||| |||||  | |  ||||||||||  |||||| |||||| || ||| |  | |||||| |||||||||||||||||    
44005579 tgccggaagaactcatcgttgatatccttttgaagcttccggtgagatccctccttcaatgtaagtgcgtttgcaaatcttggaaaaccctaatctc 44005483  T

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