View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4378_high_1 (Length: 637)

Name: NF4378_high_1
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4378_high_1
NF4378_high_1
[»] chr2 (11 HSPs)
chr2 (5-622)||(36452282-36452894)
chr2 (157-229)||(37153924-37153996)
chr2 (158-229)||(7833325-7833396)
chr2 (158-229)||(44587673-44587744)
chr2 (160-229)||(25903729-25903798)
chr2 (155-224)||(45651020-45651089)
chr2 (171-223)||(4860275-4860326)
chr2 (160-228)||(8996794-8996862)
chr2 (188-224)||(12486065-12486101)
chr2 (189-217)||(41120030-41120058)
chr2 (157-205)||(41464756-41464804)
[»] chr1 (12 HSPs)
chr1 (155-249)||(101516-101610)
chr1 (155-248)||(101492-101584)
chr1 (155-248)||(40212293-40212386)
chr1 (159-239)||(35944074-35944154)
chr1 (157-220)||(22819176-22819239)
chr1 (155-223)||(39514974-39515042)
chr1 (166-234)||(50105685-50105753)
chr1 (199-246)||(897091-897138)
chr1 (189-221)||(8174165-8174197)
chr1 (156-248)||(22819174-22819266)
chr1 (155-219)||(35944090-35944154)
chr1 (156-224)||(51590471-51590539)
[»] chr4 (18 HSPs)
chr4 (411-619)||(19087204-19087412)
chr4 (157-229)||(12766883-12766955)
chr4 (155-229)||(54357924-54357998)
chr4 (155-216)||(6724914-6724975)
chr4 (158-266)||(50533369-50533475)
chr4 (161-220)||(10554940-10554999)
chr4 (155-220)||(12766884-12766949)
chr4 (160-224)||(20114104-20114168)
chr4 (189-224)||(21861120-21861155)
chr4 (189-224)||(21916983-21917018)
chr4 (157-220)||(56491115-56491178)
chr4 (158-224)||(26066412-26066478)
chr4 (155-205)||(54673350-54673400)
chr4 (160-229)||(4698668-4698737)
chr4 (155-224)||(20459055-20459124)
chr4 (188-224)||(15794799-15794835)
chr4 (158-206)||(30206525-30206573)
chr4 (173-229)||(45828473-45828529)
[»] chr8 (18 HSPs)
chr8 (157-220)||(30112380-30112443)
chr8 (158-221)||(27976764-27976827)
chr8 (158-221)||(28034033-28034096)
chr8 (158-224)||(27976765-27976831)
chr8 (158-224)||(28034034-28034100)
chr8 (160-249)||(325222-325311)
chr8 (155-224)||(9420626-9420695)
chr8 (198-257)||(41175193-41175252)
chr8 (155-229)||(14547793-14547867)
chr8 (159-224)||(27870980-27871045)
chr8 (158-219)||(27870980-27871041)
chr8 (188-221)||(28872189-28872222)
chr8 (158-222)||(27789320-27789384)
chr8 (156-220)||(43409877-43409941)
chr8 (155-217)||(1364161-1364223)
chr8 (158-220)||(10107319-10107377)
chr8 (188-224)||(289152-289188)
chr8 (160-224)||(10396831-10396895)
[»] chr3 (9 HSPs)
chr3 (155-246)||(45361988-45362079)
chr3 (162-224)||(36750790-36750852)
chr3 (155-224)||(28406506-28406575)
chr3 (155-224)||(32711242-32711311)
chr3 (160-229)||(48593187-48593256)
chr3 (158-220)||(32711245-32711307)
chr3 (157-246)||(45362013-45362101)
chr3 (165-229)||(1755893-1755957)
chr3 (189-229)||(26331248-26331288)
[»] chr7 (11 HSPs)
chr7 (155-229)||(47681557-47681631)
chr7 (155-220)||(47612330-47612395)
chr7 (155-220)||(35436262-35436327)
chr7 (157-254)||(37002870-37002967)
chr7 (158-222)||(7430087-7430151)
chr7 (161-249)||(37489783-37489871)
chr7 (158-229)||(37489812-37489883)
chr7 (155-209)||(28838165-28838219)
chr7 (155-229)||(35436256-35436330)
chr7 (155-224)||(40362009-40362078)
chr7 (197-257)||(26422114-26422173)
[»] chr5 (2 HSPs)
chr5 (157-229)||(12442276-12442348)
chr5 (157-246)||(6761051-6761140)
[»] scaffold0025 (1 HSPs)
scaffold0025 (155-229)||(65984-66058)
[»] chr6 (6 HSPs)
chr6 (155-220)||(20703440-20703505)
chr6 (160-224)||(1158284-1158348)
chr6 (161-213)||(2284822-2284874)
chr6 (165-224)||(29938661-29938720)
chr6 (155-229)||(6686855-6686929)
chr6 (156-229)||(20703434-20703507)
[»] scaffold0032 (1 HSPs)
scaffold0032 (155-217)||(47270-47332)


Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 5 - 622
Target Start/End: Original strand, 36452282 - 36452894
Alignment:
Q  5 tacgtaactcattcatttcattcttcatgatatatatcacttttataatttttattgtctcaaaattattctcattcaaaatatacttcaatatctcaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36452282 tacgtaactcattcatttcattcttcatgatatatatcacttttataatttttattgtctcaaaattattctcattcaaaatatacttcaatatctcaca 36452381  T
Q  105 acactagaaataaatataaaattagctatgaagaaaaatatt-cnnnnnnnaggttcattgaataagtaatgtatctggttaacaatatagaccagatac 203  Q
    ||||||||||||    ||||||||||||||||||||  | || |       ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  36452382 acactagaaata----taaaattagctatgaagaaatttttttctttttttaggttcattaaataagtaatgtatctggttaacaatatagatcagatac 36452477  T
Q  204 attaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccgaatgtagtacatgtctaagattgacactgtcattcatgtaaatatt 303  Q
    || ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  36452478 atcaattattcaatgaatctagaaaactaatcttttcatat--atatgagaccgaatgtagtacatgtctaagggtgacactttcattcatgtaaatatt 36452575  T
Q  304 ttctaagatattataacacatatctaagcttttcatatatatgatgacaatgtatatcttgcttgtaatcagcatttgcaggggagagatgtcgtggaga 403  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36452576 ttctaagatattataacacatgtctaagcttttcatatatatgatgacaatgtatatcttgcttgtaatcagcatttgcaggggagagatgtcgtggaga 36452675  T
Q  404 cacggaacaatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggt 503  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36452676 cacggaacaatggtttttcttttcaccaagacaagatagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggt 36452775  T
Q  504 tctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatgatgttttacataggaaaagctccatctggaaggaaaaccaaat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36452776 tctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatggtgttttacataggaaaagctccatctggaaggaaaaccaaat 36452875  T
Q  604 ggaagatgcatgaatataa 622  Q
    |||||||||||||||||||    
T  36452876 ggaagatgcatgaatataa 36452894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 37153996 - 37153924
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||||||||||||||| |||  | |||||  | |||| |||||||| |||||||||||||||| ||||    
T  37153996 gttcattgaataagtaatgtacctgacttacaatgaaaaccatatacattatttattcaatgaatctaaaaaa 37153924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 7833325 - 7833396
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||||| | ||||||||| || | |||||||| |||||||||||| |||| ||| |||||| ||||    
T  7833325 ttcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatctaaaaaa 7833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 44587744 - 44587673
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||| ||| |||||| |||| | |||||||||||| |||||| | |||||||||||| ||| ||||    
T  44587744 ttcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaacctaaaaaa 44587673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25903729 - 25903798
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||| |||||||||| ||| |||||  |||  |||||||||||||||| |||| ||||| ||||    
T  25903729 cattgaataattaatgtatctcgtttacaatgaagagtagatacattaattattaaatgtatctaaaaaa 25903798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 45651020 - 45651089
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||| ||||||||| | ||| ||||| |  | |||||||||||||||||| |||||||||| |||||||    
T  45651020 aggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatcta 45651089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 4860326 - 4860275
Alignment:
Q  171 taatgtatctggttaacaatatagaccagatacattaattattcaatgaatct 223  Q
    |||||||||||||| | | |||||||||||||||| | |||||||||||||||    
T  4860326 taatgtatctggtttata-tatagaccagatacatcagttattcaatgaatct 4860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 8996794 - 8996862
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaa 228  Q
    |||||||||| |||||||||| ||  | |||| |||| | ||||||| ||||||||||| |||||||||    
T  8996794 cattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaa 8996862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 12486065 - 12486101
Alignment:
Q  188 aatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  12486065 aatatagaccaaatacatcaattattcaatgaatcta 12486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 41120030 - 41120058
Alignment:
Q  189 atatagaccagatacattaattattcaat 217  Q
    |||||||||||||||||||||||||||||    
T  41120030 atatagaccagatacattaattattcaat 41120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 41464756 - 41464804
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacat 205  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||||    
T  41464756 gttcattgaataattaatgtatctcgttataaatatagactagatacat 41464804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 101516 - 101610
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 249  Q
    ||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||    
T  101516 aggttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattattcaatgaacctacgaaaagaatcttttcgtatatata 101610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 101584 - 101492
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 248  Q
    ||||||||||||||| |||||||||||||| ||| | || |||||||||||||||||||||||||| ||| ||||  ||||||||| |||||||    
T  101584 aggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaaccta-aaaaagaatcttttcttatatat 101492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 40212386 - 40212293
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 248  Q
    |||| |||||||||| |||||||| |  || ||||||||||||||||| |||||||||||||| ||  ||||||| |||| ||||| |||||||    
T  40212386 aggtccattgaataattaatgtattttttttacaatatagaccagatatattaattattcaataaacttagaaaaataatattttcttatatat 40212293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 35944154 - 35944074
Alignment:
Q  159 tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatctttt 239  Q
    ||||||||||| ||||||||||| || ||||| |||| |||||||||||||||||||| ||| ||| ||||  ||||||||    
T  35944154 tcattgaataattaatgtatctgctttacaatgtagatcagatacattaattattcaacgaacctaaaaaatgaatctttt 35944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 22819239 - 22819176
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||  ||||||||||| || |||||  |||||| |||||||||||||||||||||    
T  22819239 gttcattgaatagttaatgtatctgatttacaatgaagaccatatacattaattattcaatgaa 22819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 39514974 - 39515042
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatct 223  Q
    |||||| |||||||| |||||||||||||| | |||||| | |||||||| || ||||| |||||||||    
T  39514974 aggttcgttgaataactaatgtatctggtttataatatatatcagatacaatagttatttaatgaatct 39515042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 50105753 - 50105685
Alignment:
Q  166 ataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaat 234  Q
    |||| |||||||||| ||| | | |||||| |||||||||| ||||||||||||||||| |||| ||||    
T  50105753 ataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaattaat 50105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 897091 - 897138
Alignment:
Q  199 gatacattaattattcaatgaatctagaaaactaatcttttcatatat 246  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  897091 gatacattaattattcaatgtatctaaaaaaataatcttttcttatat 897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 8174165 - 8174197
Alignment:
Q  189 atatagaccagatacattaattattcaatgaat 221  Q
    ||||||||||||||||||||| |||||||||||    
T  8174165 atatagaccagatacattaatcattcaatgaat 8174197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 22819174 - 22819266
Alignment:
Q  156 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 248  Q
    |||||||||||||| |||||||| ||||   || | || | |||||||||||| |||||||||||  || ||||  ||||||||| |||||||    
T  22819174 ggttcattgaataattaatgtatatggtcttcattgtaaatcagatacattaactattcaatgaacgtaaaaaaagaatcttttcttatatat 22819266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 35944090 - 35944154
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga 219  Q
    |||||| |||||||| ||||||||||| |  ||| | || | |||||||||||||||||||||||    
T  35944090 aggttcgttgaataattaatgtatctgatctacattgtaaagcagatacattaattattcaatga 35944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 51590471 - 51590539
Alignment:
Q  156 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||| |||||| |||||||||| ||||  ||||||||| |||||||| | |||  |||||||||||    
T  51590471 ggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttacacaatgaatcta 51590539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 411 - 619
Target Start/End: Complemental strand, 19087412 - 19087204
Alignment:
Q  411 caatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggttctccta 510  Q
    ||||||||||||||||||||| | |||||||||||    || ||||| ||||| || ||||| ||  ||||||| || ||||| || || |||||||||     
T  19087412 caatggtttttcttttcaccaggtcaagagagagaagcaaggggagggagacctaatagaactactgcttgtggatactggaaggcaacaggttctcctg 19087313  T
Q  511 gctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatgatgttttacataggaaaagctccatctggaaggaaaaccaaatggaagat 610  Q
    | || ||||| |||||  | |||||||| |||||  | | |||||||||| | || || | |||||||||||||  |||||||||||| |||||||||||    
T  19087312 gttatgtttattcttcagataacaaagttattggggtgaagaaaaccatggttttctataaaggaaaagctccaagtggaaggaaaacaaaatggaagat 19087213  T
Q  611 gcatgaata 619  Q
    | |||||||    
T  19087212 gaatgaata 19087204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 12766883 - 12766955
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  12766883 gttcattgaataattaatgtatctactttacaatgtagaccagatacattaattattcaatgaacctaaaaaa 12766955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 54357998 - 54357924
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| ||||    
T  54357998 aggttcatttaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa 54357924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6724975 - 6724914
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaa 216  Q
    ||||||||||||||| |||| |||||| ||  |||| |||||||||||||||||||||||||    
T  6724975 aggttcattgaataattaatatatctgtttttcaatgtagaccagatacattaattattcaa 6724914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 50533369 - 50533475
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 257  Q
    |||||| ||||| |||| |||||| || ||||| ||||||||||||||||| || |||||||| ||| |||| |||| |||||   ||||| ||||||||    
T  50533369 ttcattaaataattaatatatctgctttacaatgtagaccagatacattaactactcaatgaacctaaaaaaataatattttc--ttatatttgagaccg 50533466  T
Q  258 aatgtagta 266  Q
    |||| ||||    
T  50533467 aatgaagta 50533475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 10554940 - 10554999
Alignment:
Q  161 attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||| ||||||||||  || |||||  ||||||||||||||||||||||||||||    
T  10554940 attgaataattaatgtatctactttacaatgaagaccagatacattaattattcaatgaa 10554999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 12766949 - 12766884
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||||| |||||||||||||  ||| | || |  |||||||||||||||||||||||    
T  12766949 aggttcattgaataattaatgtatctggtctacattgtaaagtagatacattaattattcaatgaa 12766884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 20114104 - 20114168
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||||||| | |||||| ||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  20114104 cattgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta 20114168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 21861120 - 21861155
Alignment:
Q  189 atatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21861120 atatagaccagatacattaattatttaatgaatcta 21861155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 21916983 - 21917018
Alignment:
Q  189 atatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21916983 atatagaccagatacattaattatttaatgaatcta 21917018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 56491178 - 56491115
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||| ||||||| || ||||  ||||||||| |||||||||| |||| |||||||    
T  56491178 gttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa 56491115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 26066412 - 26066478
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||| | ||||| ||||||||||    
T  26066412 ttcattgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatcta 26066478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 54673350 - 54673400
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacat 205  Q
    ||||||||||||||||||||| |||| ||||  ||||||||| ||||||||    
T  54673350 aggttcattgaataagtaatgcatctcgttataaatatagactagatacat 54673400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 4698668 - 4698737
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||| | |||||||||||| | | | ||||||| |||||| |||||||||||| ||||| ||||    
T  4698668 cattgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaa 4698737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 20459055 - 20459124
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||| ||||| |||| ||| || || | ||| ||||||||||||||||| || ||||||||||||    
T  20459055 aggttcattaaataattaatatatatgttttaaaatgtagaccagatacattaactactcaatgaatcta 20459124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 15794835 - 15794799
Alignment:
Q  188 aatatagaccagatacattaattattcaatgaatcta 224  Q
    |||| |||||||||||||||||||||||||| |||||    
T  15794835 aataaagaccagatacattaattattcaatgtatcta 15794799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 30206573 - 30206525
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacatt 206  Q
    |||||||||||| | |||||||||||| | ||||||||||| |||||||    
T  30206573 ttcattgaataattgatgtatctggtttataatatagaccaaatacatt 30206525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 45828473 - 45828529
Alignment:
Q  173 atgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||| ||||| | | ||||||||| |||||||||||| |||||||||||| ||||    
T  45828473 atgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaaa 45828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 30112443 - 30112380
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||| ||||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  30112443 gttcattgaataattaatgtatctatttaacaatgtagaccaaatacattaattattcaatgaa 30112380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 27976827 - 27976764
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat 221  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||    
T  27976827 ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 27976764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 28034096 - 28034033
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat 221  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||    
T  28034096 ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 28034033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 27976765 - 27976831
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||| ||||| ||||| |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  27976765 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta 27976831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 28034034 - 28034100
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||| ||||| ||||| |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  28034034 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta 28034100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 325311 - 325222
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 249  Q
    |||||||||| |||||||||| ||| |||||  |||| |||||||||||||||| |||| ||||| ||||  ||| ||||| ||||||||    
T  325311 cattgaataattaatgtatctcgtttacaatgaagactagatacattaattattaaatgtatctaaaaaaagaatattttcttatatata 325222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 9420695 - 9420626
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||| |||||||| ||||||| || ||||  |||||||||||||||||||| |||| |||||||||||    
T  9420695 aggttctttgaataattaatgtacctcgttataaatatagaccagatacattacttatacaatgaatcta 9420626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 41175252 - 41175193
Alignment:
Q  198 agatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 257  Q
    |||||| |||||||||||||||||||| ||||  || |||||| ||||||||||||||||    
T  41175252 agatacgttaattattcaatgaatctaaaaaaggaaacttttcttatatatatgagaccg 41175193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 14547867 - 14547793
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||| ||||    
T  14547867 aggttcattaaataattaatgtatctgctttacaatgtagaccagatagattaactactcaatgaacctaaaaaa 14547793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 27870980 - 27871045
Alignment:
Q  159 tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||| ||||| ||| | |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  27870980 tcattaaataattaaagcatctggtctataatgtagaccagatacattaattattcaatgaatcta 27871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 27871041 - 27870980
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga 219  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| | ||||||||| |||||    
T  27871041 ttcattgaataattaatgtatctggtctacattatagaccagatgctttaattatttaatga 27870980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 28872189 - 28872222
Alignment:
Q  188 aatatagaccagatacattaattattcaatgaat 221  Q
    ||||||||||||||||||||||||||||||||||    
T  28872189 aatatagaccagatacattaattattcaatgaat 28872222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 27789384 - 27789320
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc 222  Q
    |||||||||||| | |||||| |||| || | |||| ||||||||||| ||||||||||||||||    
T  27789384 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 27789320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 43409941 - 43409877
Alignment:
Q  156 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    |||||||||||||| ||||||| || ||||  ||||||||| |||||||||| |||| |||||||    
T  43409941 ggttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa 43409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 1364223 - 1364161
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat 217  Q
    ||||||||||||||| |||||||| | ||| ||| | ||| ||| ||||||||||||||||||    
T  1364223 aggttcattgaataaataatgtatttagtttacattgtagtccaaatacattaattattcaat 1364161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 10107319 - 10107377
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    |||||||||||| |||||||| ||||    |||||||||||||||||| | ||||||||||||    
T  10107319 ttcattgaataattaatgtatatggt----aatatagaccagatacatcagttattcaatgaa 10107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 289188 - 289152
Alignment:
Q  188 aatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  289188 aatatagaccaaatacattaaatattcaatgaatcta 289152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 10396895 - 10396831
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||| || | |||||| ||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  10396895 cattgaacaatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta 10396831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 45362079 - 45361988
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 246  Q
    ||||| ||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||  || ||||  ||||||||| |||||    
T  45362079 aggttaattgaataattaatgtatctgctttacaatgtagaccagatacattaattactcaatgaacttaaaaaatgaatcttttcttatat 45361988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 36750790 - 36750852
Alignment:
Q  162 ttgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||||| ||||||||||| || ||||| |||| |||||||||||| || ||||||||||||    
T  36750790 ttgaataattaatgtatctgctttacaatgtagatcagatacattaactactcaatgaatcta 36750852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 28406575 - 28406506
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||||||||| | ||||| | |||  | ||||||||||| ||||||||||||||||| |||||||    
T  28406575 aggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaacgaatcta 28406506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 32711242 - 32711311
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||||||||||||| | |||||| |||   | | |||||||||||||||| ||||||||||||||||||    
T  32711242 aggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatcta 32711311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 48593187 - 48593256
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||| | ||||||| |||  | ||||||||||| |||||| |||||||||||||||||| ||||    
T  48593187 cattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaaa 48593256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 32711307 - 32711245
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    |||||||||||| | |||||||||||  | ||||||| ||| |||||| ||||||||||||||    
T  32711307 ttcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 45362013 - 45362101
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 246  Q
    ||||||||| ||| |||||||||||||  ||| | || | ||||||||||||||||||||| || ||| ||||  ||||||||| |||||    
T  45362013 gttcattgagtaattaatgtatctggtctacattgtaaagcagatacattaattattcaattaaccta-aaaaagaatcttttcttatat 45362101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 1755957 - 1755893
Alignment:
Q  165 aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||| |||||||||||||    | ||| ||||| |||||||||||||| |||||||||||||||    
T  1755957 aataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctagaaaa 1755893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 26331288 - 26331248
Alignment:
Q  189 atatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  26331288 atatagaccagatacattagtcattcaatgaacctagaaaa 26331248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 47681557 - 47681631
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||| ||| ||||| ||||||||||| || ||||||| ||||||||||||||| || |||||||||||| ||||    
T  47681557 aggtttattaaataattaatgtatctgctttacaatatcgaccagatacattaactactcaatgaatctaaaaaa 47681631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 47612330 - 47612395
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||||| |||||||||| ||||  ||||||||| |||||||||| |||| |||||||    
T  47612330 aggttcattgaataattaatgtatctcgttataaatatagactagatacattacttatacaatgaa 47612395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 35436262 - 35436327
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||||| | ||||||||||| || | |||| || |||||||| ||||||||||||||    
T  35436262 aggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaa 35436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 37002967 - 37002870
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgaga 254  Q
    ||||||| ||||| |||||||| |  || ||||| ||||| | ||| ||||||||||||||||| ||| ||||  ||| ||||| |||||||||||||    
T  37002967 gttcattaaataaataatgtatttattttacaatgtagacaaaatatattaattattcaatgaacctataaaaagaatattttcttatatatatgaga 37002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 7430087 - 7430151
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc 222  Q
    |||| ||||||| | |||||| ||||| |||||||||||||||||||| | ||||| ||||||||    
T  7430087 ttcagtgaataatttatgtatttggtttacaatatagaccagatacatcagttatttaatgaatc 7430151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 37489871 - 37489783
Alignment:
Q  161 attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 249  Q
    ||||||||| ||||||||||| || ||||| |  || ||||| |||||||||||||||||| ||  ||| |||| ||||| ||||||||    
T  37489871 attgaataattaatgtatctgttttacaatgtgaactagatatattaattattcaatgaatttaagaaaataatattttcttatatata 37489783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 37489812 - 37489883
Alignment:
Q  158 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||||| |||| ||||| ||| ||| | || | ||||||||||||||||||||| |||||| ||||    
T  37489812 ttcattgaataattaatatatctagttcacattgtaaaacagatacattaattattcaatcaatctaaaaaa 37489883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 28838219 - 28838165
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaat 209  Q
    |||| |||||||||| |||||||||| ||| |||||  |||||||||||||||||    
T  28838219 aggtacattgaataattaatgtatctcgtttacaatgaagaccagatacattaat 28838165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 35436330 - 35436256
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||||||||| | |||||||| ||  | ||||| |||||||||||| | |||||||||||| ||| ||||    
T  35436330 aggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaacctaaaaaa 35436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 40362078 - 40362009
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||| ||||||| | |||||||| ||||  |||||||| | || |||||| ||||||||||||||||||    
T  40362078 aggtttattgaatgattaatgtatttggtctacaatataaatcaaatacatcaattattcaatgaatcta 40362009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 26422114 - 26422173
Alignment:
Q  197 cagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 257  Q
    ||||||||||||||||||||| || ||| ||||  ||||||| | ||||||||||||||||    
T  26422114 cagatacattaattattcaattaaccta-aaaaagaatctttccttatatatatgagaccg 26422173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 12442276 - 12442348
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| ||||    
T  12442276 gttcattaaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa 12442348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 6761140 - 6761051
Alignment:
Q  157 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 246  Q
    ||||||||||||| |||||||| | ||| ||| | ||| ||| ||| ||||||||||||||||| ||| |||| || |||| || |||||    
T  6761140 gttcattgaataaataatgtatttagtttacattgtagtccaaatatattaattattcaatgaacctaaaaaaatattcttctcttatat 6761051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 66058 - 65984
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||||||||| | ||||||  |||| | ||||||||| |||||||| |||| ||||||||||||| ||||    
T  66058 aggttcattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaatgaatctaaaaaa 65984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 20703440 - 20703505
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 220  Q
    ||||||||||||||  |||||||| ||||  | ||||||||||| ||||||||| |||||||||||    
T  20703440 aggttcattgaatatttaatgtatttggtctataatatagaccaaatacattaaatattcaatgaa 20703505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 1158348 - 1158284
Alignment:
Q  160 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    |||||||||| | |||||| ||||  | ||||||||||  |||||||||||||||||||||||||    
T  1158348 cattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatcta 1158284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 2284822 - 2284874
Alignment:
Q  161 attgaataagtaatgtatctggttaacaatatagaccagatacattaattatt 213  Q
    ||||||||| ||||||||||| || | |||||||| |||||||||||||||||    
T  2284822 attgaataattaatgtatctgatttataatatagatcagatacattaattatt 2284874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 29938661 - 29938720
Alignment:
Q  165 aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 224  Q
    ||||| |||||||||| ||  |||||| |||| ||||||||||||||||||||| |||||    
T  29938661 aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatcta 29938720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 6686855 - 6686929
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    ||||||||||||||| | |||||| | ||| ||| | ||| ||| ||||||||||||||||||||| ||| ||||    
T  6686855 aggttcattgaataaatgatgtatttagtttacattgtagtccaaatacattaattattcaatgaacctaaaaaa 6686929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 20703507 - 20703434
Alignment:
Q  156 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 229  Q
    |||||||||||||  |||||||| ||||  | | ||||||||| ||||||||| ||||||||||| ||| ||||    
T  20703507 ggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaa 20703434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 47270 - 47332
Alignment:
Q  155 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat 217  Q
    ||||||||||||||| |||| | |||| || | ||| ||||||| ||||||||||||||||||    
T  47270 aggttcattgaataattaatatttctgttttaaaatgtagaccaaatacattaattattcaat 47332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University