View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4378_high_1 (Length: 637)
Name: NF4378_high_1
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4378_high_1 |
 |  |
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[»] scaffold0025 (1 HSPs) |
 |  |  |
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[»] scaffold0032 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 5 - 622
Target Start/End: Original strand, 36452282 - 36452894
Alignment:
Q |
5 |
tacgtaactcattcatttcattcttcatgatatatatcacttttataatttttattgtctcaaaattattctcattcaaaatatacttcaatatctcaca |
104 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
36452282 |
tacgtaactcattcatttcattcttcatgatatatatcacttttataatttttattgtctcaaaattattctcattcaaaatatacttcaatatctcaca |
36452381 |
T |
 |
Q |
105 |
acactagaaataaatataaaattagctatgaagaaaaatatt-cnnnnnnnaggttcattgaataagtaatgtatctggttaacaatatagaccagatac |
203 |
Q |
|
|
|||||||||||| |||||||||||||||||||| | || | ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
36452382 |
acactagaaata----taaaattagctatgaagaaatttttttctttttttaggttcattaaataagtaatgtatctggttaacaatatagatcagatac |
36452477 |
T |
 |
Q |
204 |
attaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccgaatgtagtacatgtctaagattgacactgtcattcatgtaaatatt |
303 |
Q |
|
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
T |
36452478 |
atcaattattcaatgaatctagaaaactaatcttttcatat--atatgagaccgaatgtagtacatgtctaagggtgacactttcattcatgtaaatatt |
36452575 |
T |
 |
Q |
304 |
ttctaagatattataacacatatctaagcttttcatatatatgatgacaatgtatatcttgcttgtaatcagcatttgcaggggagagatgtcgtggaga |
403 |
Q |
|
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
36452576 |
ttctaagatattataacacatgtctaagcttttcatatatatgatgacaatgtatatcttgcttgtaatcagcatttgcaggggagagatgtcgtggaga |
36452675 |
T |
 |
Q |
404 |
cacggaacaatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggt |
503 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
36452676 |
cacggaacaatggtttttcttttcaccaagacaagatagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggt |
36452775 |
T |
 |
Q |
504 |
tctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatgatgttttacataggaaaagctccatctggaaggaaaaccaaat |
603 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
36452776 |
tctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatggtgttttacataggaaaagctccatctggaaggaaaaccaaat |
36452875 |
T |
 |
Q |
604 |
ggaagatgcatgaatataa |
622 |
Q |
|
|
||||||||||||||||||| |
|
|
T |
36452876 |
ggaagatgcatgaatataa |
36452894 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 37153996 - 37153924
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||||||||||| ||| | ||||| | |||| |||||||| |||||||||||||||| |||| |
|
|
T |
37153996 |
gttcattgaataagtaatgtacctgacttacaatgaaaaccatatacattatttattcaatgaatctaaaaaa |
37153924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 7833325 - 7833396
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||||||||| | ||||||||| || | |||||||| |||||||||||| |||| ||| |||||| |||| |
|
|
T |
7833325 |
ttcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatctaaaaaa |
7833396 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 44587744 - 44587673
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||||||| ||| |||||| |||| | |||||||||||| |||||| | |||||||||||| ||| |||| |
|
|
T |
44587744 |
ttcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaacctaaaaaa |
44587673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25903729 - 25903798
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||||||| |||||||||| ||| ||||| ||| |||||||||||||||| |||| ||||| |||| |
|
|
T |
25903729 |
cattgaataattaatgtatctcgtttacaatgaagagtagatacattaattattaaatgtatctaaaaaa |
25903798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 45651020 - 45651089
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||| ||||||||| | ||| ||||| | | |||||||||||||||||| |||||||||| ||||||| |
|
|
T |
45651020 |
aggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatcta |
45651089 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 4860326 - 4860275
Alignment:
Q |
171 |
taatgtatctggttaacaatatagaccagatacattaattattcaatgaatct |
223 |
Q |
|
|
|||||||||||||| | | |||||||||||||||| | ||||||||||||||| |
|
|
T |
4860326 |
taatgtatctggtttata-tatagaccagatacatcagttattcaatgaatct |
4860275 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 8996794 - 8996862
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaa |
228 |
Q |
|
|
|||||||||| |||||||||| || | |||| |||| | ||||||| ||||||||||| ||||||||| |
|
|
T |
8996794 |
cattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaa |
8996862 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 12486065 - 12486101
Alignment:
Q |
188 |
aatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||||| |||||| |||||||||||||||||| |
|
|
T |
12486065 |
aatatagaccaaatacatcaattattcaatgaatcta |
12486101 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 41120030 - 41120058
Alignment:
Q |
189 |
atatagaccagatacattaattattcaat |
217 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
41120030 |
atatagaccagatacattaattattcaat |
41120058 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 41464756 - 41464804
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacat |
205 |
Q |
|
|
||||||||||||| |||||||||| |||| ||||||||| |||||||| |
|
|
T |
41464756 |
gttcattgaataattaatgtatctcgttataaatatagactagatacat |
41464804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 101516 - 101610
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata |
249 |
Q |
|
|
||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| ||| ||| ||||||||| |||||||| |
|
|
T |
101516 |
aggttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattattcaatgaacctacgaaaagaatcttttcgtatatata |
101610 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 101584 - 101492
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat |
248 |
Q |
|
|
||||||||||||||| |||||||||||||| ||| | || |||||||||||||||||||||||||| ||| |||| ||||||||| ||||||| |
|
|
T |
101584 |
aggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaaccta-aaaaagaatcttttcttatatat |
101492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 40212386 - 40212293
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat |
248 |
Q |
|
|
|||| |||||||||| |||||||| | || ||||||||||||||||| |||||||||||||| || ||||||| |||| ||||| ||||||| |
|
|
T |
40212386 |
aggtccattgaataattaatgtattttttttacaatatagaccagatatattaattattcaataaacttagaaaaataatattttcttatatat |
40212293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 35944154 - 35944074
Alignment:
Q |
159 |
tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatctttt |
239 |
Q |
|
|
||||||||||| ||||||||||| || ||||| |||| |||||||||||||||||||| ||| ||| |||| |||||||| |
|
|
T |
35944154 |
tcattgaataattaatgtatctgctttacaatgtagatcagatacattaattattcaacgaacctaaaaaatgaatctttt |
35944074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 22819239 - 22819176
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
|||||||||||| ||||||||||| || ||||| |||||| ||||||||||||||||||||| |
|
|
T |
22819239 |
gttcattgaatagttaatgtatctgatttacaatgaagaccatatacattaattattcaatgaa |
22819176 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 39514974 - 39515042
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatct |
223 |
Q |
|
|
|||||| |||||||| |||||||||||||| | |||||| | |||||||| || ||||| ||||||||| |
|
|
T |
39514974 |
aggttcgttgaataactaatgtatctggtttataatatatatcagatacaatagttatttaatgaatct |
39515042 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 50105753 - 50105685
Alignment:
Q |
166 |
ataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaat |
234 |
Q |
|
|
|||| |||||||||| ||| | | |||||| |||||||||| ||||||||||||||||| |||| |||| |
|
|
T |
50105753 |
ataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaattaat |
50105685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 897091 - 897138
Alignment:
Q |
199 |
gatacattaattattcaatgaatctagaaaactaatcttttcatatat |
246 |
Q |
|
|
|||||||||||||||||||| ||||| |||| |||||||||| ||||| |
|
|
T |
897091 |
gatacattaattattcaatgtatctaaaaaaataatcttttcttatat |
897138 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 8174165 - 8174197
Alignment:
Q |
189 |
atatagaccagatacattaattattcaatgaat |
221 |
Q |
|
|
||||||||||||||||||||| ||||||||||| |
|
|
T |
8174165 |
atatagaccagatacattaatcattcaatgaat |
8174197 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 22819174 - 22819266
Alignment:
Q |
156 |
ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat |
248 |
Q |
|
|
|||||||||||||| |||||||| |||| || | || | |||||||||||| ||||||||||| || |||| ||||||||| ||||||| |
|
|
T |
22819174 |
ggttcattgaataattaatgtatatggtcttcattgtaaatcagatacattaactattcaatgaacgtaaaaaaagaatcttttcttatatat |
22819266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 35944090 - 35944154
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga |
219 |
Q |
|
|
|||||| |||||||| ||||||||||| | ||| | || | ||||||||||||||||||||||| |
|
|
T |
35944090 |
aggttcgttgaataattaatgtatctgatctacattgtaaagcagatacattaattattcaatga |
35944154 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 51590471 - 51590539
Alignment:
Q |
156 |
ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||| |||||| |||||||||| |||| ||||||||| |||||||| | ||| ||||||||||| |
|
|
T |
51590471 |
ggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttacacaatgaatcta |
51590539 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 411 - 619
Target Start/End: Complemental strand, 19087412 - 19087204
Alignment:
Q |
411 |
caatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggttctccta |
510 |
Q |
|
|
||||||||||||||||||||| | ||||||||||| || ||||| ||||| || ||||| || ||||||| || ||||| || || ||||||||| |
|
|
T |
19087412 |
caatggtttttcttttcaccaggtcaagagagagaagcaaggggagggagacctaatagaactactgcttgtggatactggaaggcaacaggttctcctg |
19087313 |
T |
 |
Q |
511 |
gctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatgatgttttacataggaaaagctccatctggaaggaaaaccaaatggaagat |
610 |
Q |
|
|
| || ||||| ||||| | |||||||| ||||| | | |||||||||| | || || | ||||||||||||| |||||||||||| ||||||||||| |
|
|
T |
19087312 |
gttatgtttattcttcagataacaaagttattggggtgaagaaaaccatggttttctataaaggaaaagctccaagtggaaggaaaacaaaatggaagat |
19087213 |
T |
 |
Q |
611 |
gcatgaata |
619 |
Q |
|
|
| ||||||| |
|
|
T |
19087212 |
gaatgaata |
19087204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 12766883 - 12766955
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
T |
12766883 |
gttcattgaataattaatgtatctactttacaatgtagaccagatacattaattattcaatgaacctaaaaaa |
12766955 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 54357998 - 54357924
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| |||| |
|
|
T |
54357998 |
aggttcatttaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa |
54357924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 6724975 - 6724914
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaa |
216 |
Q |
|
|
||||||||||||||| |||| |||||| || |||| ||||||||||||||||||||||||| |
|
|
T |
6724975 |
aggttcattgaataattaatatatctgtttttcaatgtagaccagatacattaattattcaa |
6724914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 50533369 - 50533475
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg |
257 |
Q |
|
|
|||||| ||||| |||| |||||| || ||||| ||||||||||||||||| || |||||||| ||| |||| |||| ||||| ||||| |||||||| |
|
|
T |
50533369 |
ttcattaaataattaatatatctgctttacaatgtagaccagatacattaactactcaatgaacctaaaaaaataatattttc--ttatatttgagaccg |
50533466 |
T |
 |
Q |
258 |
aatgtagta |
266 |
Q |
|
|
|||| |||| |
|
|
T |
50533467 |
aatgaagta |
50533475 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 10554940 - 10554999
Alignment:
Q |
161 |
attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||| |
|
|
T |
10554940 |
attgaataattaatgtatctactttacaatgaagaccagatacattaattattcaatgaa |
10554999 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 12766949 - 12766884
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
||||||||||||||| ||||||||||||| ||| | || | ||||||||||||||||||||||| |
|
|
T |
12766949 |
aggttcattgaataattaatgtatctggtctacattgtaaagtagatacattaattattcaatgaa |
12766884 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 20114104 - 20114168
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||||||| | |||||| ||||| | ||||||||||| |||||||| ||||||||| |||||| |
|
|
T |
20114104 |
cattgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta |
20114168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 21861120 - 21861155
Alignment:
Q |
189 |
atatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||||||||||||||||||| |||||||||| |
|
|
T |
21861120 |
atatagaccagatacattaattatttaatgaatcta |
21861155 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 21916983 - 21917018
Alignment:
Q |
189 |
atatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||||||||||||||||||| |||||||||| |
|
|
T |
21916983 |
atatagaccagatacattaattatttaatgaatcta |
21917018 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 56491178 - 56491115
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
||||||||||||| ||||||| || |||| ||||||||| |||||||||| |||| ||||||| |
|
|
T |
56491178 |
gttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa |
56491115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 26066412 - 26066478
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||||||||| | ||||||| ||| | |||||||||||||||||| | ||||| |||||||||| |
|
|
T |
26066412 |
ttcattgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatcta |
26066478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 54673350 - 54673400
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacat |
205 |
Q |
|
|
||||||||||||||||||||| |||| |||| ||||||||| |||||||| |
|
|
T |
54673350 |
aggttcattgaataagtaatgcatctcgttataaatatagactagatacat |
54673400 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 4698668 - 4698737
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||||||| | |||||||||||| | | | ||||||| |||||| |||||||||||| ||||| |||| |
|
|
T |
4698668 |
cattgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaa |
4698737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 20459055 - 20459124
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||| ||||| |||| ||| || || | ||| ||||||||||||||||| || |||||||||||| |
|
|
T |
20459055 |
aggttcattaaataattaatatatatgttttaaaatgtagaccagatacattaactactcaatgaatcta |
20459124 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 15794835 - 15794799
Alignment:
Q |
188 |
aatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||| |||||||||||||||||||||||||| ||||| |
|
|
T |
15794835 |
aataaagaccagatacattaattattcaatgtatcta |
15794799 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 30206573 - 30206525
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacatt |
206 |
Q |
|
|
|||||||||||| | |||||||||||| | ||||||||||| ||||||| |
|
|
T |
30206573 |
ttcattgaataattgatgtatctggtttataatatagaccaaatacatt |
30206525 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 45828473 - 45828529
Alignment:
Q |
173 |
atgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||| ||||| | | ||||||||| |||||||||||| |||||||||||| |||| |
|
|
T |
45828473 |
atgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaaa |
45828529 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 30112443 - 30112380
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||||| |
|
|
T |
30112443 |
gttcattgaataattaatgtatctatttaacaatgtagaccaaatacattaattattcaatgaa |
30112380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 27976827 - 27976764
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat |
221 |
Q |
|
|
|||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||| ||||||| |
|
|
T |
27976827 |
ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat |
27976764 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 28034096 - 28034033
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat |
221 |
Q |
|
|
|||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||| ||||||| |
|
|
T |
28034096 |
ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat |
28034033 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 27976765 - 27976831
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||| ||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
T |
27976765 |
ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta |
27976831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 28034034 - 28034100
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||| ||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
T |
28034034 |
ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta |
28034100 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 325311 - 325222
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata |
249 |
Q |
|
|
|||||||||| |||||||||| ||| ||||| |||| |||||||||||||||| |||| ||||| |||| ||| ||||| |||||||| |
|
|
T |
325311 |
cattgaataattaatgtatctcgtttacaatgaagactagatacattaattattaaatgtatctaaaaaaagaatattttcttatatata |
325222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 9420695 - 9420626
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||| |||||||| ||||||| || |||| |||||||||||||||||||| |||| ||||||||||| |
|
|
T |
9420695 |
aggttctttgaataattaatgtacctcgttataaatatagaccagatacattacttatacaatgaatcta |
9420626 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 41175252 - 41175193
Alignment:
Q |
198 |
agatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg |
257 |
Q |
|
|
|||||| |||||||||||||||||||| |||| || |||||| |||||||||||||||| |
|
|
T |
41175252 |
agatacgttaattattcaatgaatctaaaaaaggaaacttttcttatatatatgagaccg |
41175193 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 14547867 - 14547793
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||| |||| |
|
|
T |
14547867 |
aggttcattaaataattaatgtatctgctttacaatgtagaccagatagattaactactcaatgaacctaaaaaa |
14547793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 27870980 - 27871045
Alignment:
Q |
159 |
tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||| ||||| ||| | ||||||| | ||| ||||||||||||||||||||||||||||||||| |
|
|
T |
27870980 |
tcattaaataattaaagcatctggtctataatgtagaccagatacattaattattcaatgaatcta |
27871045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 27871041 - 27870980
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga |
219 |
Q |
|
|
|||||||||||| ||||||||||||| ||| |||||||||||| | ||||||||| ||||| |
|
|
T |
27871041 |
ttcattgaataattaatgtatctggtctacattatagaccagatgctttaattatttaatga |
27870980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 28872189 - 28872222
Alignment:
Q |
188 |
aatatagaccagatacattaattattcaatgaat |
221 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
28872189 |
aatatagaccagatacattaattattcaatgaat |
28872222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 27789384 - 27789320
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc |
222 |
Q |
|
|
|||||||||||| | |||||| |||| || | |||| ||||||||||| |||||||||||||||| |
|
|
T |
27789384 |
ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc |
27789320 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 43409941 - 43409877
Alignment:
Q |
156 |
ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
|||||||||||||| ||||||| || |||| ||||||||| |||||||||| |||| ||||||| |
|
|
T |
43409941 |
ggttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa |
43409877 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 1364223 - 1364161
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat |
217 |
Q |
|
|
||||||||||||||| |||||||| | ||| ||| | ||| ||| |||||||||||||||||| |
|
|
T |
1364223 |
aggttcattgaataaataatgtatttagtttacattgtagtccaaatacattaattattcaat |
1364161 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 10107319 - 10107377
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
|||||||||||| |||||||| |||| |||||||||||||||||| | |||||||||||| |
|
|
T |
10107319 |
ttcattgaataattaatgtatatggt----aatatagaccagatacatcagttattcaatgaa |
10107377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 289188 - 289152
Alignment:
Q |
188 |
aatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||||| ||||||||| ||||||||||||||| |
|
|
T |
289188 |
aatatagaccaaatacattaaatattcaatgaatcta |
289152 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 10396895 - 10396831
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||| || | |||||| ||||| | ||||||||||| |||||||| ||||||||| |||||| |
|
|
T |
10396895 |
cattgaacaatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta |
10396831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 45362079 - 45361988
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat |
246 |
Q |
|
|
||||| ||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||| || |||| ||||||||| ||||| |
|
|
T |
45362079 |
aggttaattgaataattaatgtatctgctttacaatgtagaccagatacattaattactcaatgaacttaaaaaatgaatcttttcttatat |
45361988 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 36750790 - 36750852
Alignment:
Q |
162 |
ttgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||||| ||||||||||| || ||||| |||| |||||||||||| || |||||||||||| |
|
|
T |
36750790 |
ttgaataattaatgtatctgctttacaatgtagatcagatacattaactactcaatgaatcta |
36750852 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 28406575 - 28406506
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||||||||| | ||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| |
|
|
T |
28406575 |
aggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaacgaatcta |
28406506 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 32711242 - 32711311
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||||||||||||| | |||||| ||| | | |||||||||||||||| |||||||||||||||||| |
|
|
T |
32711242 |
aggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatcta |
32711311 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 48593187 - 48593256
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||||||| | ||||||| ||| | ||||||||||| |||||| |||||||||||||||||| |||| |
|
|
T |
48593187 |
cattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaaa |
48593256 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 32711307 - 32711245
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
|||||||||||| | ||||||||||| | ||||||| ||| |||||| |||||||||||||| |
|
|
T |
32711307 |
ttcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa |
32711245 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 45362013 - 45362101
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat |
246 |
Q |
|
|
||||||||| ||| ||||||||||||| ||| | || | ||||||||||||||||||||| || ||| |||| ||||||||| ||||| |
|
|
T |
45362013 |
gttcattgagtaattaatgtatctggtctacattgtaaagcagatacattaattattcaattaaccta-aaaaagaatcttttcttatat |
45362101 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 1755957 - 1755893
Alignment:
Q |
165 |
aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||| ||||||||||||| | ||| ||||| |||||||||||||| ||||||||||||||| |
|
|
T |
1755957 |
aataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctagaaaa |
1755893 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 26331288 - 26331248
Alignment:
Q |
189 |
atatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||||||||| | |||||||||| |||||||| |
|
|
T |
26331288 |
atatagaccagatacattagtcattcaatgaacctagaaaa |
26331248 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 47681557 - 47681631
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||| ||| ||||| ||||||||||| || ||||||| ||||||||||||||| || |||||||||||| |||| |
|
|
T |
47681557 |
aggtttattaaataattaatgtatctgctttacaatatcgaccagatacattaactactcaatgaatctaaaaaa |
47681631 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 47612330 - 47612395
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
||||||||||||||| |||||||||| |||| ||||||||| |||||||||| |||| ||||||| |
|
|
T |
47612330 |
aggttcattgaataattaatgtatctcgttataaatatagactagatacattacttatacaatgaa |
47612395 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 35436262 - 35436327
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
||||||||||||||| | ||||||||||| || | |||| || |||||||| |||||||||||||| |
|
|
T |
35436262 |
aggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaa |
35436327 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 37002967 - 37002870
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgaga |
254 |
Q |
|
|
||||||| ||||| |||||||| | || ||||| ||||| | ||| ||||||||||||||||| ||| |||| ||| ||||| ||||||||||||| |
|
|
T |
37002967 |
gttcattaaataaataatgtatttattttacaatgtagacaaaatatattaattattcaatgaacctataaaaagaatattttcttatatatatgaga |
37002870 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 7430087 - 7430151
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc |
222 |
Q |
|
|
|||| ||||||| | |||||| ||||| |||||||||||||||||||| | ||||| |||||||| |
|
|
T |
7430087 |
ttcagtgaataatttatgtatttggtttacaatatagaccagatacatcagttatttaatgaatc |
7430151 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 37489871 - 37489783
Alignment:
Q |
161 |
attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata |
249 |
Q |
|
|
||||||||| ||||||||||| || ||||| | || ||||| |||||||||||||||||| || ||| |||| ||||| |||||||| |
|
|
T |
37489871 |
attgaataattaatgtatctgttttacaatgtgaactagatatattaattattcaatgaatttaagaaaataatattttcttatatata |
37489783 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 37489812 - 37489883
Alignment:
Q |
158 |
ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
|||||||||||| |||| ||||| ||| ||| | || | ||||||||||||||||||||| |||||| |||| |
|
|
T |
37489812 |
ttcattgaataattaatatatctagttcacattgtaaaacagatacattaattattcaatcaatctaaaaaa |
37489883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 28838219 - 28838165
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaat |
209 |
Q |
|
|
|||| |||||||||| |||||||||| ||| ||||| ||||||||||||||||| |
|
|
T |
28838219 |
aggtacattgaataattaatgtatctcgtttacaatgaagaccagatacattaat |
28838165 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 35436330 - 35436256
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||||| | |||||||| || | ||||| |||||||||||| | |||||||||||| ||| |||| |
|
|
T |
35436330 |
aggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaacctaaaaaa |
35436256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 40362078 - 40362009
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||| ||||||| | |||||||| |||| |||||||| | || |||||| |||||||||||||||||| |
|
|
T |
40362078 |
aggtttattgaatgattaatgtatttggtctacaatataaatcaaatacatcaattattcaatgaatcta |
40362009 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 26422114 - 26422173
Alignment:
Q |
197 |
cagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg |
257 |
Q |
|
|
||||||||||||||||||||| || ||| |||| ||||||| | |||||||||||||||| |
|
|
T |
26422114 |
cagatacattaattattcaattaaccta-aaaaagaatctttccttatatatatgagaccg |
26422173 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 12442276 - 12442348
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| |||| |
|
|
T |
12442276 |
gttcattaaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa |
12442348 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 6761140 - 6761051
Alignment:
Q |
157 |
gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat |
246 |
Q |
|
|
||||||||||||| |||||||| | ||| ||| | ||| ||| ||| ||||||||||||||||| ||| |||| || |||| || ||||| |
|
|
T |
6761140 |
gttcattgaataaataatgtatttagtttacattgtagtccaaatatattaattattcaatgaacctaaaaaaatattcttctcttatat |
6761051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 66058 - 65984
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||||| | |||||| |||| | ||||||||| |||||||| |||| ||||||||||||| |||| |
|
|
T |
66058 |
aggttcattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaatgaatctaaaaaa |
65984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 20703440 - 20703505
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa |
220 |
Q |
|
|
|||||||||||||| |||||||| |||| | ||||||||||| ||||||||| ||||||||||| |
|
|
T |
20703440 |
aggttcattgaatatttaatgtatttggtctataatatagaccaaatacattaaatattcaatgaa |
20703505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 1158348 - 1158284
Alignment:
Q |
160 |
cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
|||||||||| | |||||| |||| | |||||||||| ||||||||||||||||||||||||| |
|
|
T |
1158348 |
cattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatcta |
1158284 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 2284822 - 2284874
Alignment:
Q |
161 |
attgaataagtaatgtatctggttaacaatatagaccagatacattaattatt |
213 |
Q |
|
|
||||||||| ||||||||||| || | |||||||| ||||||||||||||||| |
|
|
T |
2284822 |
attgaataattaatgtatctgatttataatatagatcagatacattaattatt |
2284874 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 29938661 - 29938720
Alignment:
Q |
165 |
aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta |
224 |
Q |
|
|
||||| |||||||||| || |||||| |||| ||||||||||||||||||||| ||||| |
|
|
T |
29938661 |
aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatcta |
29938720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 6686855 - 6686929
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||||| | |||||| | ||| ||| | ||| ||| ||||||||||||||||||||| ||| |||| |
|
|
T |
6686855 |
aggttcattgaataaatgatgtatttagtttacattgtagtccaaatacattaattattcaatgaacctaaaaaa |
6686929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 20703507 - 20703434
Alignment:
Q |
156 |
ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa |
229 |
Q |
|
|
||||||||||||| |||||||| |||| | | ||||||||| ||||||||| ||||||||||| ||| |||| |
|
|
T |
20703507 |
ggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaa |
20703434 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 47270 - 47332
Alignment:
Q |
155 |
aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat |
217 |
Q |
|
|
||||||||||||||| |||| | |||| || | ||| ||||||| |||||||||||||||||| |
|
|
T |
47270 |
aggttcattgaataattaatatttctgttttaaaatgtagaccaaatacattaattattcaat |
47332 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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