View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4378_low_4 (Length: 231)
Name: NF4378_low_4
Description: NF4378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4378_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 30099489 - 30099705
Alignment:
| Q |
1 |
tgttctacttgtttacaataacactttatcttcatgcaactcattgaacttgttatctcaacttaacaaaaaagtgattattctctgtgatgactcattg |
100 |
Q |
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| T |
30099489 |
tgttctacttgtttacaataacactttatcttcatgcaactcattgaacttgttatctcaacttaacaaaaaagtgattattctctgtgatgactcattg |
30099588 |
T |
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| Q |
101 |
tcaaacagaaacaaaacctcggtgtttaaccaaatcaatgttgttacagaagccaatctgttaggggcagtgtttgtctctgatagtcctcagttaattg |
200 |
Q |
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| T |
30099589 |
tcaaacagaaacaaaacctcagtgtttaaccaaatcaatgttgttacagaagccaatctgttaggggcagtgtttgtctctgatagtcctcagttaatcg |
30099688 |
T |
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| Q |
201 |
atttaggacgtatctac |
217 |
Q |
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| T |
30099689 |
atttaggacgtatctac |
30099705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 30091309 - 30091214
Alignment:
| Q |
122 |
gtgtttaaccaaatcaatgttgttacagaagccaatctgttaggggcagtgtttgtctctgatagtcctcagttaattgatttaggacgtatctac |
217 |
Q |
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| T |
30091309 |
gtgtttgatcaaatcgatgttgttacacaaaccaatatgttaggggcagtgtttctctctgatagtcctgaattaattgatttaagacatatctac |
30091214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 30091414 - 30091353
Alignment:
| Q |
8 |
cttgtttacaataacactttatcttcatgcaactcattgaacttgttatctcaacttaacaa |
69 |
Q |
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| T |
30091414 |
cttgtttacgataacactttatcttcatgcaattcagtgaagcgtttatctcaagttaacaa |
30091353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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