View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379-Insertion-1 (Length: 1100)
Name: NF4379-Insertion-1
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 842; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 28 - 974
Target Start/End: Complemental strand, 23909682 - 23908738
Alignment:
| Q |
28 |
gataatttacaatgtgtatcgatgtgtttacgttgtgctagttgttggttcaggtgttcttattactgtgaaatatggaaatttgcaaaatgttccttac |
127 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23909682 |
gataatttacaatgtgtatcgatgtgttttcgttgtactagttgttggttcaggtgttcttattactgtgaaatatggaaatttgcaaaatgttccttac |
23909583 |
T |
|
| Q |
128 |
actaagcgaaaatatttgcttctttggtcaaatgcgcgagataggatggctggggacagtagttttgaaaataagaagttagattttaaggaggatttat |
227 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23909582 |
actaagcgaaaacatttgcttctttggtcaaatgcgcgagataggatggctggggacagtagttttgaaaataagaagttagattttaaggaggatttat |
23909483 |
T |
|
| Q |
228 |
tgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatctttgatgcattgaagagagacttgagtaaaaagaatatgtggcgtga |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23909482 |
tgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatttttgatgcattgaagagagacttgagtaaaaagaatatgtggcgtga |
23909383 |
T |
|
| Q |
328 |
tgatttagggaagagtaggaaaaaggcgaatcaacgtcagtctcatcagccttgtacgtcgcatttagacggattgaattgggatattttggtggtgaat |
427 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23909382 |
tgatttagggaagagtaggaaaaaggcgaatcaacgtcagtctcatcagccttgtacgtcgcatttagacggattgaattggggtattttggtggtgaat |
23909283 |
T |
|
| Q |
428 |
gacaacactattgctaatgcctactcctatcctaatgggaaggtaatggtatttacaggtttgcttgagcttttaaccagtgatgatttagcgactctta |
527 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
23909282 |
gacaacactattgctaatgcctactcctatcctaatgggaaggtaatggtatttacaggtttgcttgagcttttaaccagtgatgacttagcgactctta |
23909183 |
T |
|
| Q |
528 |
ttgcacatgaggtattggattgatttgtttaactcattaatacaactttttggattgacttaattaaatttatctacttctataagcacttatgagactg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23909182 |
ttgcacatgaggtattggattgatttgtttaactcattaatacaactttttggattgacttaattaaatttatctacttctataagcacttatgagactg |
23909083 |
T |
|
| Q |
628 |
attgatagagattctagaaagaatgtatgacatttgaataagttgtttggatagcttattttagaaaacacttaattaagttatgtattcaaacaaggcc |
727 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23909082 |
attgatagagattctagaaagaatgtatgacatttgaataagttgtttggatagtttattttagaaaacacttaattaagttatgtattcaaacaaggcc |
23908983 |
T |
|
| Q |
728 |
gctatatatttctgcattttaatatatttaagacataaatctaacatttttcagcttgataattaggttggacatactgttgctagacatgcagctgagg |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23908982 |
gctatatatttctgcattttaatatatttaagacataaatctaacatttttcagcttgataattaggttggacatactgttgctagacatgcagctgagg |
23908883 |
T |
|
| Q |
828 |
gccagacaaactatatgnnnnnnnatcattcaacaactgatattacttcctttcgtctcttttccgtctcttattgtcaacttaatagcagcggcgttcc |
927 |
Q |
| |
|
||||||| |||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23908882 |
accagacagactatatg-ttttttatcatccaacaattgatattacttcctttcatctcttttccgtctcttattgtcaacttaatagcagc-gcgttcc |
23908785 |
T |
|
| Q |
928 |
ataagtcttcttttctcgagaacggtaatgatt-cttccttatctact |
974 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
23908784 |
ataatgcttcttttctcgag-acggtaatgattccttccttatctact |
23908738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 892 - 1062
Target Start/End: Complemental strand, 23908708 - 23908535
Alignment:
| Q |
892 |
cgtctcttattgtcaacttaatagcagcggcgttccataagtcttcttttctcgagaacggtaatgatt-cttccttatctac-tgattaaa--tgattc |
987 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||| | ||| |
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|
| T |
23908708 |
cgtctcttattgtcaacttaatagcagc-gcgttccataatgcttcttttctcgag-acggtaatgattccttccttatctacttgattaaaatggtttc |
23908611 |
T |
|
| Q |
988 |
aaataaatctgatctggga--tttcattcgt--aaaaaggcaattcattaatgtgaactttcatgaggcattcgatagc |
1062 |
Q |
| |
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|||| |||||||||||||| |||||| ||| |||||||| ||||||| |||||| ||||||||||||||| |||||| |
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|
| T |
23908610 |
aaat-aatctgatctgggaattttcatccgtaaaaaaaggc-attcatt-atgtgacctttcatgaggcatttgatagc |
23908535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 21960323 - 21960220
Alignment:
| Q |
225 |
tattgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatctttgatgcattgaagagagacttgagtaaaaagaatatgtggcg |
324 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||| | || || |||||||||| |||||||| ||||| ||||| | |
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|
| T |
21960323 |
tattgcctgcaatgcaccctgaaagtgtgagagttaggatgatagcgaatgatattgtcgaggcgttgaagagagggttgagtaaggagaatgtgtggag |
21960224 |
T |
|
| Q |
325 |
tgat |
328 |
Q |
| |
|
|||| |
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|
| T |
21960223 |
tgat |
21960220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 21960040 - 21959993
Alignment:
| Q |
382 |
tacgtcgcatttagacggattgaattgggatattttggtggtgaatga |
429 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||||||||| |
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|
| T |
21960040 |
tacgtcgcatttggatggattgaattgggagattttggtggtgaatga |
21959993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 904446 - 904547
Alignment:
| Q |
227 |
ttgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatctttgatgcattgaagagagacttgagtaaaaagaatatgtggcgtg |
326 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||||||| || ||| ||| |||| || |||||||||| |||||||| ||||| ||||| ||| |
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|
| T |
904446 |
ttgcctgcaatgcaccctgaaagtgtaagagtgaggatgattgcaaatgatattgttgaagctttgaagagagggttgagtaaggagaatgtgtggagtg |
904545 |
T |
|
| Q |
327 |
at |
328 |
Q |
| |
|
|| |
|
|
| T |
904546 |
at |
904547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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