View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379-Insertion-1 (Length: 1100)

Name: NF4379-Insertion-1
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379-Insertion-1
NF4379-Insertion-1
[»] chr6 (4 HSPs)
chr6 (28-974)||(23908738-23909682)
chr6 (892-1062)||(23908535-23908708)
chr6 (225-328)||(21960220-21960323)
chr6 (382-429)||(21959993-21960040)
[»] chr3 (1 HSPs)
chr3 (227-328)||(904446-904547)


Alignment Details
Target: chr6 (Bit Score: 842; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 28 - 974
Target Start/End: Complemental strand, 23909682 - 23908738
Alignment:
28 gataatttacaatgtgtatcgatgtgtttacgttgtgctagttgttggttcaggtgttcttattactgtgaaatatggaaatttgcaaaatgttccttac 127  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23909682 gataatttacaatgtgtatcgatgtgttttcgttgtactagttgttggttcaggtgttcttattactgtgaaatatggaaatttgcaaaatgttccttac 23909583  T
128 actaagcgaaaatatttgcttctttggtcaaatgcgcgagataggatggctggggacagtagttttgaaaataagaagttagattttaaggaggatttat 227  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23909582 actaagcgaaaacatttgcttctttggtcaaatgcgcgagataggatggctggggacagtagttttgaaaataagaagttagattttaaggaggatttat 23909483  T
228 tgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatctttgatgcattgaagagagacttgagtaaaaagaatatgtggcgtga 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
23909482 tgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatttttgatgcattgaagagagacttgagtaaaaagaatatgtggcgtga 23909383  T
328 tgatttagggaagagtaggaaaaaggcgaatcaacgtcagtctcatcagccttgtacgtcgcatttagacggattgaattgggatattttggtggtgaat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
23909382 tgatttagggaagagtaggaaaaaggcgaatcaacgtcagtctcatcagccttgtacgtcgcatttagacggattgaattggggtattttggtggtgaat 23909283  T
428 gacaacactattgctaatgcctactcctatcctaatgggaaggtaatggtatttacaggtttgcttgagcttttaaccagtgatgatttagcgactctta 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
23909282 gacaacactattgctaatgcctactcctatcctaatgggaaggtaatggtatttacaggtttgcttgagcttttaaccagtgatgacttagcgactctta 23909183  T
528 ttgcacatgaggtattggattgatttgtttaactcattaatacaactttttggattgacttaattaaatttatctacttctataagcacttatgagactg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23909182 ttgcacatgaggtattggattgatttgtttaactcattaatacaactttttggattgacttaattaaatttatctacttctataagcacttatgagactg 23909083  T
628 attgatagagattctagaaagaatgtatgacatttgaataagttgtttggatagcttattttagaaaacacttaattaagttatgtattcaaacaaggcc 727  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
23909082 attgatagagattctagaaagaatgtatgacatttgaataagttgtttggatagtttattttagaaaacacttaattaagttatgtattcaaacaaggcc 23908983  T
728 gctatatatttctgcattttaatatatttaagacataaatctaacatttttcagcttgataattaggttggacatactgttgctagacatgcagctgagg 827  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23908982 gctatatatttctgcattttaatatatttaagacataaatctaacatttttcagcttgataattaggttggacatactgttgctagacatgcagctgagg 23908883  T
828 gccagacaaactatatgnnnnnnnatcattcaacaactgatattacttcctttcgtctcttttccgtctcttattgtcaacttaatagcagcggcgttcc 927  Q
     ||||||| ||||||||       ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
23908882 accagacagactatatg-ttttttatcatccaacaattgatattacttcctttcatctcttttccgtctcttattgtcaacttaatagcagc-gcgttcc 23908785  T
928 ataagtcttcttttctcgagaacggtaatgatt-cttccttatctact 974  Q
    ||||  |||||||||||||| |||||||||||| ||||||||||||||    
23908784 ataatgcttcttttctcgag-acggtaatgattccttccttatctact 23908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 892 - 1062
Target Start/End: Complemental strand, 23908708 - 23908535
Alignment:
892 cgtctcttattgtcaacttaatagcagcggcgttccataagtcttcttttctcgagaacggtaatgatt-cttccttatctac-tgattaaa--tgattc 987  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||| ||||||||||||| ||||||||   | |||    
23908708 cgtctcttattgtcaacttaatagcagc-gcgttccataatgcttcttttctcgag-acggtaatgattccttccttatctacttgattaaaatggtttc 23908611  T
988 aaataaatctgatctggga--tttcattcgt--aaaaaggcaattcattaatgtgaactttcatgaggcattcgatagc 1062  Q
    |||| ||||||||||||||  |||||| |||  |||||||| ||||||| |||||| ||||||||||||||| ||||||    
23908610 aaat-aatctgatctgggaattttcatccgtaaaaaaaggc-attcatt-atgtgacctttcatgaggcatttgatagc 23908535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 21960323 - 21960220
Alignment:
225 tattgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatctttgatgcattgaagagagacttgagtaaaaagaatatgtggcg 324  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||  |||  | || || ||||||||||  ||||||||  ||||| ||||| |    
21960323 tattgcctgcaatgcaccctgaaagtgtgagagttaggatgatagcgaatgatattgtcgaggcgttgaagagagggttgagtaaggagaatgtgtggag 21960224  T
325 tgat 328  Q
    ||||    
21960223 tgat 21960220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 21960040 - 21959993
Alignment:
382 tacgtcgcatttagacggattgaattgggatattttggtggtgaatga 429  Q
    |||||||||||| || |||||||||||||| |||||||||||||||||    
21960040 tacgtcgcatttggatggattgaattgggagattttggtggtgaatga 21959993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 904446 - 904547
Alignment:
227 ttgcctgaaatacaccctgaaagtgtgagagtgaggatgatagcgaatcgtatctttgatgcattgaagagagacttgagtaaaaagaatatgtggcgtg 326  Q
    ||||||| ||| |||||||||||||| |||||||||||||| || |||  |||  |||| || ||||||||||  ||||||||  ||||| ||||| |||    
904446 ttgcctgcaatgcaccctgaaagtgtaagagtgaggatgattgcaaatgatattgttgaagctttgaagagagggttgagtaaggagaatgtgtggagtg 904545  T
327 at 328  Q
    ||    
904546 at 904547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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