View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4379-Insertion-3 (Length: 1031)
Name: NF4379-Insertion-3
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379-Insertion-3 |
 | |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 954; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 954; E-Value: 0
Query Start/End: Original strand, 7 - 1031
Target Start/End: Complemental strand, 22416295 - 22415272
Alignment:
| Q |
7 |
aacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagcccttcactaacttaataaatttctttgctttggatggctcaaaaaactcaac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416295 |
aacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagcccttcactaacttaataaatttctttgctttggatggctcaaaaaactcaac |
22416196 |
T |
|
| Q |
107 |
cccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctcatccatcaattgcactaactctttagcacgatcaaccaatagatcccca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22416195 |
cccatgaaaaccttcttcctgaaaatctttgacaacttccacacccttctcatccatcaattgcactaactctttagcacgatcagccaatagatcccca |
22416096 |
T |
|
| Q |
207 |
ccgttaatactcaccaataccctccacccttgatcctttatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22416095 |
ccgttaatactcaccaataccctccacccttgatcctttatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattac |
22415996 |
T |
|
| Q |
307 |
gatcaactccaataggtaatgccaaatcccaacacaaatcactaacacacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22415995 |
gatcaactccaataggtaatgccaaatcccaacacaaatcactaacgcacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctatt |
22415896 |
T |
|
| Q |
407 |
ggtcccaccaaaaaatggttgacgcaatatcaacccttggatcttcaatggctcaaaatcattcaccttttcaactacacgtaaccctgcatggtatgca |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
22415895 |
ggtcccaccaaaaaatggttgacgcaatatcaacccttggatcttcaatggctcaaaatcattcaccttttcaagtacacgtagccctgcatggtatgca |
22415796 |
T |
|
| Q |
507 |
atggtagctccagcactatttcccattaggtaacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgctt |
606 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22415795 |
atggtagctccagcactattacccattaggtaacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgctt |
22415696 |
T |
|
| Q |
607 |
ccatagcatcatcatatgccgccggtagccggtgctccggtgcgaggcgataatctaccgaagcgacaactgcttcgacagtatcagccatatcaacaca |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| |
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|
| T |
22415695 |
ccatagcatcatcatatgccgccggtagccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcaacagtatccgccatatcaacaca |
22415596 |
T |
|
| Q |
707 |
taaatcatggaagttggtggaggctgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaggtttgaaaca |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
22415595 |
taaatcatggaagttggtggaggctgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaagtttgaaaca |
22415496 |
T |
|
| Q |
807 |
tttgttgcttttttaggtaggaataatcgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaag |
906 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415495 |
tttgttgcttttttaggtaggaataaccgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaag |
22415396 |
T |
|
| Q |
907 |
gtgaggtgtgtggatcttcaaaatatcgagtaagtgtatcattgggatggtgggtggattttggaggagttggtaaggatcggttgtaggtggtggatgc |
1006 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22415395 |
gtgaggtgtgtggatcttcaaaatatcgagtaagtgtatcattgggatggt-gttggatttt-gaggagttggtaaggatcggttgtaggtggtggatgc |
22415298 |
T |
|
| Q |
1007 |
atggtttga-tagacatagtgtgtgg |
1031 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
22415297 |
atggtttgattagacatagtgtgtgg |
22415272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 24 - 954
Target Start/End: Complemental strand, 22400444 - 22399514
Alignment:
| Q |
24 |
tgactctaagcatcgaaagtggaaatgaagcccttcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttctt |
123 |
Q |
| |
|
|||| |||||||||||| ||| ||||| || ||||| | || |||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||| |
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|
| T |
22400444 |
tgaccctaagcatcgaactaggagatgaaacctttcaccacctcaataaagttctttgctttggatagctcaaaaaactcaactccatgaaaaccatctt |
22400345 |
T |
|
| Q |
124 |
cctgaaaatctttgacaacttccacacccttctcatccatcaattgcactaactctttagcacgatcaaccaatagatccccaccgttaatactcaccaa |
223 |
Q |
| |
|
| |||||||| || || |||||||||||||| || |||| ||||| ||| ||||| ||| ||||||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
22400344 |
cttgaaaatccttcaccacttccacacccttttcctccaacaatttcaccaactccttattacgatcaaccaatggatctccaccattcatactcaccaa |
22400245 |
T |
|
| Q |
224 |
taccctccacccttgatcctttatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattacgatcaactccaataggt |
323 |
Q |
| |
|
||||||||| | |||||||| |||||| | | ||||||||||||| |||| |||||| || ||||| |||||||||||| ||| | ||| ||||| ||| |
|
|
| T |
22400244 |
caccctccactcatgatccttaatcttagcaagtttttcatcaacaccattcccaacccttagattggaatactcatgatcacggttaacaccaattggt |
22400145 |
T |
|
| Q |
324 |
aatgccaaatcccaacacaaatcactaacacacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatg |
423 |
Q |
| |
|
|| || || ||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
22400144 |
aacgctaactcccacatcaaatcactaacacacaaaggaaaaacaggatcattctcaagtcttaactctgactcagtcctattggtcccaccaaaaaatg |
22400045 |
T |
|
| Q |
424 |
gttgacgcaatatcaacccttggatcttcaatggctcaaaatcattcaccttttcaactacacgtaaccctgcatggtatgcaatggtagctccagcact |
523 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||||| |||||||| || ||||| ||| |||||||||| |
|
|
| T |
22400044 |
gttgacgcaatatcaacccttgaattttcaacggctcaagatcattcatcttttcaactacacgtagtcctgcatgatacgcaattgtacctccagcact |
22399945 |
T |
|
| Q |
524 |
atttcccattaggtaacacttagaatagtcaacatatttagtcaaccattcatcttgacttgatctaatcaaactcaatgcttccatagcatcatcatat |
623 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22399944 |
atttcccattagaaaacattttgaaaagtcaacatatttagtcaaccattcatcatcacttgacctaatcaaactcaatgcttccatagcatcatcataa |
22399845 |
T |
|
| Q |
624 |
gccgccggtagccggtgctccggtgcgaggcgataatctaccgaagcgacaactgcttcgacagtatcagccatatcaacacataaatcatggaagttgg |
723 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| ||| |||| |||| ||||| | | |
|
|
| T |
22399844 |
gccgccggcaaccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaaattgtggaacattg |
22399745 |
T |
|
| Q |
724 |
tggaggctgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaggtttgaaacatttgttgcttttttagg |
823 |
Q |
| |
|
|||||||||||||| | || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22399744 |
tggaggctgcacttagtacaatgaagccacttccatgaaagaaaacaataagtggtagtagcttgttgtttaggtttgaaacatttgttgcttttttagg |
22399645 |
T |
|
| Q |
824 |
taggaataatcgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgaggtgtgtggatct |
923 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22399644 |
tagaaataatcgaagccatgtttggtttgattggttgatggtgagatctttggtgagaacagaaagagaagtgtctaatgaaggtgaggtgtgtggatct |
22399545 |
T |
|
| Q |
924 |
tcaaaatatcgagtaagtgtatcattgggat |
954 |
Q |
| |
|
|||| || |||||| |||||||| ||||||| |
|
|
| T |
22399544 |
tcaagatttcgagtgagtgtatcgttgggat |
22399514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 492 - 559
Target Start/End: Complemental strand, 22492815 - 22492748
Alignment:
| Q |
492 |
cctgcatggtatgcaatggtagctccagcactatttcccattaggtaacacttagaatagtcaacata |
559 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || |||||||||||||| |||||||| |
|
|
| T |
22492815 |
cctgcatggtaagcaatggtagcaccagcactttttcccataagataacacttagaataatcaacata |
22492748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 472
Target Start/End: Complemental strand, 22496540 - 22496116
Alignment:
| Q |
45 |
gaaatgaagcccttcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaactt |
144 |
Q |
| |
|
|||||||| ||||| | ||||| ||| |||||||| || || |||| ||| || |||| | |||||| |||| ||||| | ||| ||||| ||||| | |
|
|
| T |
22496540 |
gaaatgaaacccttaattaactcaatcaatttcttagccttcaatggatcataatactctattccatgacaaccatcttcatcaaagtctttcacaacat |
22496441 |
T |
|
| Q |
145 |
ccacacccttctcatccatcaattgcactaactctttagcacgatcaaccaatagatccccaccgttaatactcaccaataccctccacccttgatcctt |
244 |
Q |
| |
|
|||||||| || ||||||||||| | |||||||| |||||||||||| | |||||||||| || ||||||||| || |||| | | ||| | |
|
|
| T |
22496440 |
gaacacccttttcctccatcaattgtgccaactctttctcacgatcaaccactggatccccaccatttccactcaccaacactttccattcaaggtccct |
22496341 |
T |
|
| Q |
245 |
tatcttatccaatttttcatcaacatcatttccaaccgttggattgcaatactcatgattacgatcaactccaataggtaatgccaaatcccaacacaaa |
344 |
Q |
| |
|
||||||||| || ||| |||| | ||| |||||| ||||||||||||||||||||| ||||||| | || || || | ||| || ||||| ||| |
|
|
| T |
22496340 |
tatcttatcaaacttt---tcaaaactattcccaacccttggattgcaatactcatgatcacgatcagcacctattggaagtgctaactcccacattaaa |
22496244 |
T |
|
| Q |
345 |
tcactaacacacaaaggaaaatttggatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatggttgacgcaatatcaaccctt |
444 |
Q |
| |
|
||| ||||||| || |||| || ||||||| ||||| |||| || |||| || || | |||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
22496243 |
tcagtaacacataatggaaggatttgatcattctcaagcttcaattcagatttggttctttctttcccaccaaagaatggttggcgcaatattaaccctt |
22496144 |
T |
|
| Q |
445 |
ggatcttcaatggctcaaaatcattcac |
472 |
Q |
| |
|
| ||||| | |||||||| ||| ||||| |
|
|
| T |
22496143 |
gaatcttaagtggctcaagatccttcac |
22496116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 46138587 - 46138629
Alignment:
| Q |
276 |
ccaaccgttggattgcaatactcatgattacgatcaactccaa |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
46138587 |
ccaaccgttggattacaatactcatgatcacggtcaactccaa |
46138629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 267784 - 267743
Alignment:
| Q |
410 |
cccaccaaaaaatggttgacgcaatatcaacccttggatctt |
451 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
267784 |
cccaccaaaaaatggttggtgcaatatcaaccctttgatctt |
267743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 370 - 451
Target Start/End: Complemental strand, 277526 - 277445
Alignment:
| Q |
370 |
gatcattttcaagtctcaactctgattcagtcctattggtcccaccaaaaaatggttgacgcaatatcaacccttggatctt |
451 |
Q |
| |
|
|||||||||| |||||||| || || | ||||| | || ||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
277526 |
gatcattttcgagtctcaattccgaatttgtcctttgggagccaccaaaaaatggttggtgcaatatcaaccctttgatctt |
277445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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