View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4379-Insertion-4 (Length: 900)
Name: NF4379-Insertion-4
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4379-Insertion-4 |
 |  |
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[»] scaffold0038 (3 HSPs) |
 |  |  |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 45937567 - 45937931
Alignment:
Q |
8 |
caatcaactatcaacttcaaatttttaaagccgtatcagtttattagcttatttacattaccttttgacatctaccagaattttgttcacctaattaagt |
107 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
45937567 |
caatcaactatcaacttcaaatttttaaagccgtatcagtttattagcttatttacattaccttttgacatctaccagaattttgttcacctaattaagt |
45937666 |
T |
 |
Q |
108 |
tcattttcaatgatgcaaggaaattaccactacatggtatgagttttagactagtatctaaataccaaaaatagataaaactaacgattttacataaatt |
207 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
45937667 |
tcattttcaatgatgcaaggaaattaccactacatggtatgagttttagactagtatctaaatactaaaaatagataaaactaacgattttacataaatt |
45937766 |
T |
 |
Q |
208 |
acatattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagg |
307 |
Q |
|
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
45937767 |
acatattagaatattaatcaataactgttgttcagaatctggagtgcaacttttgaacatgagcttctgaagtgcagcttttgatgtcttcaaaagcagg |
45937866 |
T |
 |
Q |
308 |
gtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
|| ||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||| |
|
|
T |
45937867 |
gtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggagtttgttac |
45937931 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 381 - 527
Target Start/End: Original strand, 45937963 - 45938112
Alignment:
Q |
381 |
tgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaac---tttgtgttattttcatcttgcttagaaacaacttat |
477 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
T |
45937963 |
tgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaacaactttatgttattttcatcttgcttagaaacatcttat |
45938062 |
T |
 |
Q |
478 |
ttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
T |
45938063 |
ttttcataagcacttccgctgtgcatagaacatagggaattgttctaaca |
45938112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 217 - 372
Target Start/End: Original strand, 297012 - 297167
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaa |
316 |
Q |
|
|
|||||||||||||||||||||||||| |||| |||| ||||| ||||||| | ||||||| ||||||||||||||||||||| || | | ||||||||| |
|
|
T |
297012 |
aatattaatcaataactgttgttcagcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctgatgtcttcagaaactgagtttagtaa |
297111 |
T |
 |
Q |
317 |
taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
|||||||| ||| ||||||| |||||||| |||||| |||||||||||||||||| |
|
|
T |
297112 |
caaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttac |
297167 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 217 - 372
Target Start/End: Original strand, 293118 - 293274
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatga-gcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagta |
315 |
Q |
|
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| || |||| ||| ||| ||||| ||||||||||| || | | |||||||| |
|
|
T |
293118 |
aatattaatcaataactgttgttcagcttctgaagtgcagcttctgaacaagaagcttttgatgtgtagcttttgatgtcttcagaaactgagtttagta |
293217 |
T |
 |
Q |
316 |
ataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
| |||| ||| ||| ||||||| |||||||| |||||| |||||||| ||||||||| |
|
|
T |
293218 |
acaaacattggttagcgtgttaaccaaggtagttagtttgttagaggggtttgttac |
293274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 22582480 - 22582380
Alignment:
Q |
271 |
cttctgaagtgcagcttctgatgtcttcaaaagcagg---gtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagttt |
367 |
Q |
|
|
|||||||||| || |||||||||||||||||||||| || ||||||||||||||| ||| ||||||| |||||||| |||||| ||||||||||||| |
|
|
T |
22582480 |
cttctgaagtacaacttctgatgtcttcaaaagcagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt |
22582381 |
T |
 |
Q |
368 |
g |
368 |
Q |
|
|
| |
|
|
T |
22582380 |
g |
22582380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 37186984 - 37186829
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaa |
316 |
Q |
|
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| || |||||| |
|
|
T |
37186984 |
aatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgcagcttctgatgtctttagaagcagagtctagtaa |
37186885 |
T |
 |
Q |
317 |
taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
||||| ||| || |||||| ||| |||| |||||| |||||||||||||||||| |
|
|
T |
37186884 |
taaacattggctatagtgttaaccagggtagttagtttgttagaggagtttgttac |
37186829 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 37786825 - 37786745
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga |
291 |
Q |
|
|
||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||| |
|
|
T |
37786825 |
tattggaatattaatcaataactgttgtttagaatctgaagtgcagcttctgaacatgagcttctgaagtgatgcttctga |
37786745 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 37791295 - 37791193
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||||| | ||||| |||||||| |||||| |||||||||||||| |
|
|
T |
37791295 |
agcttctgatgtgcagcttctgatgtcttcagaagcagagtt-agtaaccaaccttgattagcatgttaaccaaggtagttagtttgttagaggagtttg |
37791197 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
37791196 |
ttac |
37791193 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 37791381 - 37791301
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga |
291 |
Q |
|
|
||||| ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||| | |||||| |
|
|
T |
37791381 |
tattggaatattaatcaataactgttgttcagaatatgaagtgcaacttctgaacatgagcttctgaagtgctgtttctga |
37791301 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 37786725 - 37786622
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| ||||||||| ||||||||||| |||||| || |||||| ||||||| ||| ||||||| ||| |||| |||||| ||||||||| |||| |
|
|
T |
37786725 |
agcttctgatgtgcagcttttgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttg |
37786626 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
37786625 |
ttac |
37786622 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 11096119 - 11096220
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||| ||| ||| ||||||||||||||||| ||| || | |||||| |||| ||| ||| ||||||| ||||||| |||||| |||||||||||||| |
|
|
T |
11096119 |
agcttttgatgtgtagcttctgatgtcttcagaaggag--tctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgttagaggagtttg |
11096216 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
11096217 |
ttac |
11096220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 446 - 527
Target Start/End: Complemental strand, 37791063 - 37790983
Alignment:
Q |
446 |
tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
|||||||||||||||||| ||||| ||||||||| |||| ||| |||||||| ||||||||||||| | |||||||||||| |
|
|
T |
37791063 |
tgttattttcatcttgctcttaaacagcttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca |
37790983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 399 - 528
Target Start/End: Original strand, 5715442 - 5715575
Alignment:
Q |
399 |
atcaataaaaattcattagttttc--tctcttcagtttttacaac---tttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttc |
493 |
Q |
|
|
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
T |
5715442 |
atcaataaaaattcattagtttttcttctcttcagtttttacaacaactttatgttattt-catcttgcttagaaacaacttatttttcataagcacttt |
5715540 |
T |
 |
Q |
494 |
cgctgtgcatagaacatagtgaattgttctaacat |
528 |
Q |
|
|
| ||||||||||||||||||||||||||||||||| |
|
|
T |
5715541 |
cactgtgcatagaacatagtgaattgttctaacat |
5715575 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 5725805 - 5725716
Alignment:
Q |
437 |
acaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
|||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
5725805 |
acaactttatgttattt-catcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaaca |
5725716 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 5707100 - 5707180
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga |
291 |
Q |
|
|
||||| ||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||| |
|
|
T |
5707100 |
tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga |
5707180 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 53011149 - 53011251
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| ||||||||| ||||||||||| |||||| || |||||| |||| ||| ||| ||||||| |||||||| |||||| ||||||||| |||| |
|
|
T |
53011149 |
agcttctgatgtgcagcttatgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggattttg |
53011248 |
T |
 |
Q |
369 |
tta |
371 |
Q |
|
|
||| |
|
|
T |
53011249 |
tta |
53011251 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 53008257 - 53008360
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
|||||||||||| |||||||||||||||||| |||||| || |||||| |||| ||| ||| ||| ||| |||| || |||||| |||||||||||||| |
|
|
T |
53008257 |
agcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaaccaaactagttagtttgttagaggagtttg |
53008356 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
53008357 |
ttac |
53008360 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 56563179 - 56563256
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggta |
346 |
Q |
|
|
||||| ||||||||||||||||||||||||| |||||| || || ||| |||||||| ||| ||||||| |||||||| |
|
|
T |
56563179 |
agcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaaggta |
56563256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 50911747 - 50911794
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaa |
264 |
Q |
|
|
|||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
T |
50911747 |
aatattaatcaataactgttgttcagaagctggagtgcagcttctgaa |
50911794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 50935544 - 50935591
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaa |
264 |
Q |
|
|
|||||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
T |
50935544 |
aatattaatcaataactgttgttcagaagctggagtgcaacttctgaa |
50935591 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 5715325 - 5715386
Alignment:
Q |
311 |
tagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
|||||| |||||||| ||| ||||||| ||| ||||||||| |||||||||||||||||| |
|
|
T |
5715325 |
tagtaacaaaccttggttagcgtgttaaccagaataattagtttgttagaggagtttgttac |
5715386 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 7e-36; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 28920473 - 28920312
Alignment:
Q |
210 |
atattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggt |
309 |
Q |
|
|
|||||| ||||||||||||||| | |||||||||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||| || |
|
|
T |
28920473 |
atattggaatattaatcaataattattgttcagaatctgaagtgcagcttctgaacatgagtttctaaagtgcagcttctgatgtcttcagaagcatagt |
28920374 |
T |
 |
Q |
310 |
ttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta |
371 |
Q |
|
|
||||||| || |||| ||| | ||||| ||| |||| |||||| |||||||||||||||| |
|
|
T |
28920373 |
ctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgtta |
28920312 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 18649575 - 18649486
Alignment:
Q |
437 |
acaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
|||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
T |
18649575 |
acaactttatgttattt-catcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaaca |
18649486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 4315552 - 4315655
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||||||||||||||||||| ||||| |||||| || |||||| |||| ||| ||| ||||||| |||||||| |||||| |||||||||||||| |
|
|
T |
4315552 |
agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg |
4315651 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
4315652 |
ttac |
4315655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 18641173 - 18641093
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga |
291 |
Q |
|
|
||||| ||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||| |
|
|
T |
18641173 |
tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga |
18641093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 531671 - 531568
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| |||| ||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| | |||||| |||||| ||||||||||||| |
|
|
T |
531671 |
agcttctgatatgcaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttg |
531572 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
531571 |
ttac |
531568 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 32813593 - 32813681
Alignment:
Q |
284 |
gcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
|||| ||||||||| | |||||| | |||||| |||||||| ||| ||||||| | |||||| |||||| |||||||||||||||||| |
|
|
T |
32813593 |
gcttttgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgttagaggagtttgttac |
32813681 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 55418408 - 55418476
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgtta |
337 |
Q |
|
|
||||||| ||| |||||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| |
|
|
T |
55418408 |
agcttctaaagaacagcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgtta |
55418476 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 446 - 525
Target Start/End: Complemental strand, 41925196 - 41925118
Alignment:
Q |
446 |
tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaa |
525 |
Q |
|
|
|||||||||||||||||| ||||||||||||||| |||| ||| |||||||| ||||||||||||| | |||||||||| |
|
|
T |
41925196 |
tgttattttcatcttgctcttaaacaacttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaa |
41925118 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 271 - 527
Target Start/End: Original strand, 29960346 - 29960601
Alignment:
Q |
271 |
cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttaga-------gga |
363 |
Q |
|
|
||||||||| ||||||| ||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||| |||| | | |
|
|
T |
29960346 |
cttctgaagggcagcttatgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtctagtt |
29960445 |
T |
 |
Q |
364 |
gtttgt-tactca----tgtgttgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaactttgtgttattttcatc |
458 |
Q |
|
|
|| | | |||||| ||||||||||||||||| ||||||||||||||||||||||||| | || |||||||| ||||||||||||| |
|
|
T |
29960446 |
gtatatatactcacttatgtgttgtaaataagta----cgatcaataaaaattcattagtttt-----taca------acaactttttgttattttcatc |
29960530 |
T |
 |
Q |
459 |
ttgct--tagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
T |
29960531 |
ttgctcttagaaataacttatttttcataagcacttccgctgtgcatagaacatagtgaattgttctaaca |
29960601 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 302270 - 302350
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga |
291 |
Q |
|
|
||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||| |
|
|
T |
302270 |
tattggaatatgaatcaataactgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctga |
302350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 21794631 - 21794528
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| ||||||||||||||||||||| |||||| || |||||| ||||| || ||| ||||||| |||||||| |||||| |||||||||||||| |
|
|
T |
21794631 |
agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgttaaccaaggtagttagtttgttagaggagtttg |
21794532 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
21794531 |
ttac |
21794528 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 45485929 - 45485826
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||||||||||||||||||||||||| || ||| || ||| || |||||||| ||| ||||||| |||||||| |||||| |||||||||||||| |
|
|
T |
45485929 |
agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg |
45485830 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
45485829 |
ttac |
45485826 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 29960258 - 29960336
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttct |
289 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||| |
|
|
T |
29960258 |
tattggaatattaatcaataactgttgtttagaatttggagtgcagcttctgaacatgagcttctgaagtgctgcttct |
29960336 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 302372 - 302473
Alignment:
Q |
271 |
cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtt |
370 |
Q |
|
|
||||||| ||||||||||||||||||||| |||||| || |||||| ||||||| ||| ||||||| ||| |||| |||||| |||||||||||||||| |
|
|
T |
302372 |
cttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgtt |
302471 |
T |
 |
Q |
371 |
ac |
372 |
Q |
|
|
|| |
|
|
T |
302472 |
ac |
302473 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 295734 - 295837
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| ||||||||||||||||||||| |||||| || |||||| ||||||||||| |||||| ||| | || |||||| |||||||||||||| |
|
|
T |
295734 |
agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagtttg |
295833 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
295834 |
ttac |
295837 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 39190843 - 39190688
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaa |
316 |
Q |
|
|
||||||||||||||||||||| ||||| ||| |||||||| | || |||| || ||||||||||||| ||||| |||||||| | | || |||||| |
|
|
T |
39190843 |
aatattaatcaataactgttgctcagactcttaagtgcagcctctggacatcagactctgaagtgcagcgtctgaagtcttcaacatctaagtctagtaa |
39190744 |
T |
 |
Q |
317 |
taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
|||| ||| ||| | ||||| |||||||| |||||| |||||||||||||||||| |
|
|
T |
39190743 |
caaactttggttagcatgttaaccaaggtagttagtttgttagaggagtttgttac |
39190688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 43081778 - 43081675
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||||| ||||||||||||||||||||| |||||| || ||||||||||| ||| ||| | ||||| | |||||| |||||| |||| ||||||||| |
|
|
T |
43081778 |
agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgttataggagtttg |
43081679 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
43081678 |
ttac |
43081675 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 18163923 - 18164026
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
|||||||||| ||| |||||||||||||| | ||| || || ||||||||| | ||| ||| ||||||| |||||||| |||||| |||||||||||||| |
|
|
T |
18163923 |
agcttctgaaatgctgcttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgttagaggagtttg |
18164022 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
18164023 |
ttac |
18164026 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 295654 - 295728
Alignment:
Q |
217 |
aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga |
291 |
Q |
|
|
|||||||||| |||||||||||| ||||| || |||||||||| |||||||||||||||||||| |||| ||||| |
|
|
T |
295654 |
aatattaatcgataactgttgtttagaatttgaagtgcagcttctgaacatgagcttctgaagtacagcgtctga |
295728 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 13273295 - 13273380
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagtta |
358 |
Q |
|
|
||||||||||||||||||||| |||||| |||||| || |||||| |||||||| ||| ||||||| |||||||| |||||| |||| |
|
|
T |
13273295 |
agcttctgaagtgcagcttct----tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta |
13273380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 295921 - 296000
Alignment:
Q |
446 |
tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
|||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||||||||| | |||||||||||| |
|
|
T |
295921 |
tgttattttcatcttgctcttaaacaacttatttt--ataagcactttccgctgtgcatagaacatagcg-attgttctaaca |
296000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 527
Target Start/End: Original strand, 302558 - 302636
Alignment:
Q |
448 |
ttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
|||||||||||||||| | ||||| ||||||||| |||| ||| |||||||| ||||||||||||| | |||||||||||| |
|
|
T |
302558 |
ttattttcatcttgctcataaacatcttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca |
302636 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 44541575 - 44541492
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgt |
294 |
Q |
|
|
||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
T |
44541575 |
tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgt |
44541492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 44541453 - 44541400
Alignment:
Q |
319 |
aaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
||||||||||| |||||| ||| |||| |||||| |||||||||||||||||| |
|
|
T |
44541453 |
aaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttac |
44541400 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 49344 - 49474
Alignment:
Q |
245 |
tctggagtgcagcttttgaacatgag---cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagcca |
341 |
Q |
|
|
|||| |||||||||| ||||||| || ||||| | |||| |||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| ||| |
|
|
T |
49344 |
tctgaagtgcagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaacca |
49443 |
T |
 |
Q |
342 |
aggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
||||| |||||| ||||||| |||||||||| |
|
|
T |
49444 |
aggtagttagtttgttagagaagtttgttac |
49474 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 49262 - 49337
Alignment:
Q |
219 |
tattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgt |
294 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
49262 |
tattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt |
49337 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 49537 - 49628
Alignment:
Q |
402 |
aataaaaattcattagttttctctcttcagtttt--tacaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacactt |
492 |
Q |
|
|
|||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||| |||||||||||||| ||||| |
|
|
T |
49537 |
aataaaaattcattagttttctctcttcagttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt |
49628 |
T |
 |
Back To:
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Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 28249182 - 28249312
Alignment:
Q |
245 |
tctggagtgcagcttttgaacatgag---cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagcca |
341 |
Q |
|
|
|||| |||||||||| ||||||| || ||||| | |||| |||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| ||| |
|
|
T |
28249182 |
tctgaagtgcagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaacca |
28249281 |
T |
 |
Q |
342 |
aggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
||||| |||||| ||||||| |||||||||| |
|
|
T |
28249282 |
aggtagttagtttgttagagaagtttgttac |
28249312 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 28249100 - 28249175
Alignment:
Q |
219 |
tattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgt |
294 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
28249100 |
tattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt |
28249175 |
T |
 |
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Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 28249375 - 28249466
Alignment:
Q |
402 |
aataaaaattcattagttttctctcttcagtttt--tacaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacactt |
492 |
Q |
|
|
|||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||| |||||||||||||| ||||| |
|
|
T |
28249375 |
aataaaaattcattagttttctctcttcagttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt |
28249466 |
T |
 |
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Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 31888483 - 31888586
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
||||||| ||||||||||||||||||||||| ||||| || |||||| |||||||| ||| ||||||| | |||||| |||||| ||||||| |||||| |
|
|
T |
31888483 |
agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgttagagaagtttg |
31888582 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
31888583 |
ttac |
31888586 |
T |
 |
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Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 7501496 - 7501407
Alignment:
Q |
283 |
agcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac |
372 |
Q |
|
|
||||||||||||||||| |||||| || |||||| |||||||| ||| ||||||| ||||| || |||||| |||||||||||||||||| |
|
|
T |
7501496 |
agcttctgatgtcttcacaagcagagtctagtaacaaaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttac |
7501407 |
T |
 |
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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 9507626 - 9507726
Alignment:
Q |
272 |
ttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta |
371 |
Q |
|
|
||||||||| || ||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| |||||||| |||||| |||| |||||||||||| |
|
|
T |
9507626 |
ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttaaaggagtttgtta |
9507725 |
T |
 |
Q |
372 |
c |
372 |
Q |
|
|
| |
|
|
T |
9507726 |
c |
9507726 |
T |
 |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 34854045 - 34854146
Alignment:
Q |
271 |
cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtt |
370 |
Q |
|
|
||||||| ||||||||| ||||||||||| |||||| || ||||||||||| ||| ||| ||||||| |||||||| ||| || |||||||||||||||| |
|
|
T |
34854045 |
cttctgatgtgcagcttttgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgttagaggagtttgtt |
34854144 |
T |
 |
Q |
371 |
ac |
372 |
Q |
|
|
|| |
|
|
T |
34854145 |
ac |
34854146 |
T |
 |
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Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 689961 - 690036
Alignment:
Q |
211 |
tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagctt |
287 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||| |
|
|
T |
689961 |
tattggaatattaatcaataactgttgttcagaatctgaagtgcagc-ttcgaacatgagcttctgaagtgctgctt |
690036 |
T |
 |
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Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 32090199 - 32090299
Alignment:
Q |
272 |
ttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta |
371 |
Q |
|
|
||||||||| |||||||||||||||||| ||| || | |||||| |||||| | ||| ||||||| |||| ||| |||||| ||||||||||||||||| |
|
|
T |
32090199 |
ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta |
32090298 |
T |
 |
Q |
372 |
c |
372 |
Q |
|
|
| |
|
|
T |
32090299 |
c |
32090299 |
T |
 |
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Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 9503641 - 9503744
Alignment:
Q |
269 |
agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg |
368 |
Q |
|
|
|||||||||||| || |||||| ||||||| |||||| || ||||||||||| ||| ||| ||||||| |||| || |||||| |||||||||||||| |
|
|
T |
9503641 |
agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgttagaggagtttg |
9503740 |
T |
 |
Q |
369 |
ttac |
372 |
Q |
|
|
|||| |
|
|
T |
9503741 |
ttac |
9503744 |
T |
 |
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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 690202 - 690282
Alignment:
Q |
446 |
tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca |
527 |
Q |
|
|
||||||||||||||| ||| ||||||||||| ||| |||| ||| |||||||| ||||||||||||| | |||||||||||| |
|
|
T |
690202 |
tgttattttcatcttacttttaaacaacttatattt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca |
690282 |
T |
 |
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