View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379-Insertion-4 (Length: 900)

Name: NF4379-Insertion-4
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379-Insertion-4
NF4379-Insertion-4
[»] chr7 (5 HSPs)
chr7 (8-372)||(45937567-45937931)
chr7 (381-527)||(45937963-45938112)
chr7 (217-372)||(297012-297167)
chr7 (217-372)||(293118-293274)
chr7 (271-368)||(22582380-22582480)
[»] chr8 (7 HSPs)
chr8 (217-372)||(37186829-37186984)
chr8 (211-291)||(37786745-37786825)
chr8 (269-372)||(37791193-37791295)
chr8 (211-291)||(37791301-37791381)
chr8 (269-372)||(37786622-37786725)
chr8 (269-372)||(11096119-11096220)
chr8 (446-527)||(37790983-37791063)
[»] chr4 (9 HSPs)
chr4 (399-528)||(5715442-5715575)
chr4 (437-527)||(5725716-5725805)
chr4 (211-291)||(5707100-5707180)
chr4 (269-371)||(53011149-53011251)
chr4 (269-372)||(53008257-53008360)
chr4 (269-346)||(56563179-56563256)
chr4 (217-264)||(50911747-50911794)
chr4 (217-264)||(50935544-50935591)
chr4 (311-372)||(5715325-5715386)
[»] chr3 (8 HSPs)
chr3 (210-371)||(28920312-28920473)
chr3 (437-527)||(18649486-18649575)
chr3 (269-372)||(4315552-4315655)
chr3 (211-291)||(18641093-18641173)
chr3 (269-372)||(531568-531671)
chr3 (284-372)||(32813593-32813681)
chr3 (269-337)||(55418408-55418476)
chr3 (446-525)||(41925118-41925196)
[»] chr2 (14 HSPs)
chr2 (271-527)||(29960346-29960601)
chr2 (211-291)||(302270-302350)
chr2 (269-372)||(21794528-21794631)
chr2 (269-372)||(45485826-45485929)
chr2 (211-289)||(29960258-29960336)
chr2 (271-372)||(302372-302473)
chr2 (269-372)||(295734-295837)
chr2 (217-372)||(39190688-39190843)
chr2 (269-372)||(43081675-43081778)
chr2 (269-372)||(18163923-18164026)
chr2 (217-291)||(295654-295728)
chr2 (269-358)||(13273295-13273380)
chr2 (446-527)||(295921-296000)
chr2 (448-527)||(302558-302636)
[»] chr1 (2 HSPs)
chr1 (211-294)||(44541492-44541575)
chr1 (319-372)||(44541400-44541453)
[»] scaffold0038 (3 HSPs)
scaffold0038 (245-372)||(49344-49474)
scaffold0038 (219-294)||(49262-49337)
scaffold0038 (402-492)||(49537-49628)
[»] chr6 (5 HSPs)
chr6 (245-372)||(28249182-28249312)
chr6 (219-294)||(28249100-28249175)
chr6 (402-492)||(28249375-28249466)
chr6 (269-372)||(31888483-31888586)
chr6 (283-372)||(7501407-7501496)
[»] chr5 (6 HSPs)
chr5 (272-372)||(9507626-9507726)
chr5 (271-372)||(34854045-34854146)
chr5 (211-287)||(689961-690036)
chr5 (272-372)||(32090199-32090299)
chr5 (269-372)||(9503641-9503744)
chr5 (446-527)||(690202-690282)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 45937567 - 45937931
Alignment:
Q  8 caatcaactatcaacttcaaatttttaaagccgtatcagtttattagcttatttacattaccttttgacatctaccagaattttgttcacctaattaagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45937567 caatcaactatcaacttcaaatttttaaagccgtatcagtttattagcttatttacattaccttttgacatctaccagaattttgttcacctaattaagt 45937666  T
Q  108 tcattttcaatgatgcaaggaaattaccactacatggtatgagttttagactagtatctaaataccaaaaatagataaaactaacgattttacataaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45937667 tcattttcaatgatgcaaggaaattaccactacatggtatgagttttagactagtatctaaatactaaaaatagataaaactaacgattttacataaatt 45937766  T
Q  208 acatattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagg 307  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45937767 acatattagaatattaatcaataactgttgttcagaatctggagtgcaacttttgaacatgagcttctgaagtgcagcttttgatgtcttcaaaagcagg 45937866  T
Q  308 gtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    || ||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||    
T  45937867 gtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggagtttgttac 45937931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 381 - 527
Target Start/End: Original strand, 45937963 - 45938112
Alignment:
Q  381 tgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaac---tttgtgttattttcatcttgcttagaaacaacttat 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||| |||||    
T  45937963 tgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaacaactttatgttattttcatcttgcttagaaacatcttat 45938062  T
Q  478 ttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  45938063 ttttcataagcacttccgctgtgcatagaacatagggaattgttctaaca 45938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 217 - 372
Target Start/End: Original strand, 297012 - 297167
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaa 316  Q
    ||||||||||||||||||||||||||  |||| |||| ||||| ||||||| | ||||||| ||||||||||||||||||||| || | | |||||||||    
T  297012 aatattaatcaataactgttgttcagcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctgatgtcttcagaaactgagtttagtaa 297111  T
Q  317 taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
     |||||||| ||| ||||||| |||||||| |||||| ||||||||||||||||||    
T  297112 caaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttac 297167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 217 - 372
Target Start/End: Original strand, 293118 - 293274
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatga-gcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagta 315  Q
    ||||||||||||||||||||||||||  |||| |||||||||| |||||| || |||| ||| ||| ||||| ||||||||||| || | | ||||||||    
T  293118 aatattaatcaataactgttgttcagcttctgaagtgcagcttctgaacaagaagcttttgatgtgtagcttttgatgtcttcagaaactgagtttagta 293217  T
Q  316 ataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    | |||| ||| ||| ||||||| |||||||| |||||| |||||||| |||||||||    
T  293218 acaaacattggttagcgtgttaaccaaggtagttagtttgttagaggggtttgttac 293274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 22582480 - 22582380
Alignment:
Q  271 cttctgaagtgcagcttctgatgtcttcaaaagcagg---gtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagttt 367  Q
    |||||||||| || ||||||||||||||||||||||    || ||||||||||||||| ||| ||||||| |||||||| |||||| |||||||||||||    
T  22582480 cttctgaagtacaacttctgatgtcttcaaaagcagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 22582381  T
Q  368 g 368  Q
    |    
T  22582380 g 22582380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 37186984 - 37186829
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaa 316  Q
    ||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| || ||||||    
T  37186984 aatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgcagcttctgatgtctttagaagcagagtctagtaa 37186885  T
Q  317 taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    ||||| |||  ||  |||||| ||| |||| |||||| ||||||||||||||||||    
T  37186884 taaacattggctatagtgttaaccagggtagttagtttgttagaggagtttgttac 37186829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 37786825 - 37786745
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga 291  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||  ||||||||    
T  37786825 tattggaatattaatcaataactgttgtttagaatctgaagtgcagcttctgaacatgagcttctgaagtgatgcttctga 37786745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 37791295 - 37791193
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| |||||  ||||||||||| | ||||| |||||||| |||||| ||||||||||||||    
T  37791295 agcttctgatgtgcagcttctgatgtcttcagaagcagagtt-agtaaccaaccttgattagcatgttaaccaaggtagttagtttgttagaggagtttg 37791197  T
Q  369 ttac 372  Q
    ||||    
T  37791196 ttac 37791193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 37791381 - 37791301
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga 291  Q
    ||||| ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||| | ||||||    
T  37791381 tattggaatattaatcaataactgttgttcagaatatgaagtgcaacttctgaacatgagcttctgaagtgctgtttctga 37791301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 37786725 - 37786622
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||| ||||||||| ||||||||||| |||||| || ||||||  ||||||| ||| ||||||| ||| |||| |||||| ||||||||| ||||    
T  37786725 agcttctgatgtgcagcttttgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttg 37786626  T
Q  369 ttac 372  Q
    ||||    
T  37786625 ttac 37786622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 11096119 - 11096220
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||| ||| ||| ||||||||||||||||| ||| ||  | |||||| |||| ||| ||| |||||||  ||||||| |||||| ||||||||||||||    
T  11096119 agcttttgatgtgtagcttctgatgtcttcagaaggag--tctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgttagaggagtttg 11096216  T
Q  369 ttac 372  Q
    ||||    
T  11096217 ttac 11096220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 446 - 527
Target Start/End: Complemental strand, 37791063 - 37790983
Alignment:
Q  446 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    ||||||||||||||||||   ||||| ||||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  37791063 tgttattttcatcttgctcttaaacagcttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca 37790983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 399 - 528
Target Start/End: Original strand, 5715442 - 5715575
Alignment:
Q  399 atcaataaaaattcattagttttc--tctcttcagtttttacaac---tttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttc 493  Q
    |||||||||||||||||||||||   |||||||||||||||||||   ||| |||||||| |||||||||||||||||||||||||||||||| |||||     
T  5715442 atcaataaaaattcattagtttttcttctcttcagtttttacaacaactttatgttattt-catcttgcttagaaacaacttatttttcataagcacttt 5715540  T
Q  494 cgctgtgcatagaacatagtgaattgttctaacat 528  Q
    | |||||||||||||||||||||||||||||||||    
T  5715541 cactgtgcatagaacatagtgaattgttctaacat 5715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 5725805 - 5725716
Alignment:
Q  437 acaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  5725805 acaactttatgttattt-catcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaaca 5725716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 5707100 - 5707180
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga 291  Q
    ||||| ||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||    
T  5707100 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 5707180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 53011149 - 53011251
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||| ||||||||| ||||||||||| |||||| || |||||| |||| ||| ||| ||||||| |||||||| |||||| ||||||||| ||||    
T  53011149 agcttctgatgtgcagcttatgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggattttg 53011248  T
Q  369 tta 371  Q
    |||    
T  53011249 tta 53011251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 53008257 - 53008360
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    |||||||||||| |||||||||||||||||| |||||| || |||||| |||| ||| ||| ||| ||| ||||  || |||||| ||||||||||||||    
T  53008257 agcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaaccaaactagttagtttgttagaggagtttg 53008356  T
Q  369 ttac 372  Q
    ||||    
T  53008357 ttac 53008360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 56563179 - 56563256
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggta 346  Q
    ||||| ||||||||||||||||||||||||| |||||| || || ||| |||||||| ||| ||||||| ||||||||    
T  56563179 agcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaaggta 56563256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 50911747 - 50911794
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaa 264  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  50911747 aatattaatcaataactgttgttcagaagctggagtgcagcttctgaa 50911794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 50935544 - 50935591
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaa 264  Q
    |||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  50935544 aatattaatcaataactgttgttcagaagctggagtgcaacttctgaa 50935591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 5715325 - 5715386
Alignment:
Q  311 tagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    |||||| |||||||| ||| ||||||| |||   ||||||||| ||||||||||||||||||    
T  5715325 tagtaacaaaccttggttagcgtgttaaccagaataattagtttgttagaggagtttgttac 5715386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 7e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 28920473 - 28920312
Alignment:
Q  210 atattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggt 309  Q
    |||||| ||||||||||||||| | |||||||||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||  ||    
T  28920473 atattggaatattaatcaataattattgttcagaatctgaagtgcagcttctgaacatgagtttctaaagtgcagcttctgatgtcttcagaagcatagt 28920374  T
Q  310 ttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta 371  Q
     ||||||| || |||| ||| | ||||| ||| |||| ||||||  ||||||||||||||||    
T  28920373 ctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgtta 28920312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 18649575 - 18649486
Alignment:
Q  437 acaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  18649575 acaactttatgttattt-catcttgcttagaaacaacttattttttataagcacttctgctgtgcatagaacatagtgaattgttctaaca 18649486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 4315552 - 4315655
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||||||||||||||||||| ||||| |||||| || |||||| |||| ||| ||| ||||||| |||||||| |||||| ||||||||||||||    
T  4315552 agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 4315651  T
Q  369 ttac 372  Q
    ||||    
T  4315652 ttac 4315655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 18641173 - 18641093
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga 291  Q
    ||||| ||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||    
T  18641173 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 18641093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 531671 - 531568
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    |||||||||  |||| ||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| | |||||| ||||||  |||||||||||||    
T  531671 agcttctgatatgcaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttg 531572  T
Q  369 ttac 372  Q
    ||||    
T  531571 ttac 531568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 32813593 - 32813681
Alignment:
Q  284 gcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    |||| ||||||||| | ||||||  | |||||| |||||||| ||| ||||||| | |||||| |||||| ||||||||||||||||||    
T  32813593 gcttttgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgttagaggagtttgttac 32813681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 55418408 - 55418476
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgtta 337  Q
    ||||||| |||  |||||||||||||||||| |||||| || ||||||||||||||| ||| |||||||    
T  55418408 agcttctaaagaacagcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgtta 55418476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 446 - 525
Target Start/End: Complemental strand, 41925196 - 41925118
Alignment:
Q  446 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaa 525  Q
    ||||||||||||||||||   ||||||||||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||    
T  41925196 tgttattttcatcttgctcttaaacaacttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaa 41925118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 271 - 527
Target Start/End: Original strand, 29960346 - 29960601
Alignment:
Q  271 cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttaga-------gga 363  Q
    ||||||||| ||||||| ||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||| |||| |       |      
T  29960346 cttctgaagggcagcttatgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtctagtt 29960445  T
Q  364 gtttgt-tactca----tgtgttgtaaataagtatcaacgatcaataaaaattcattagttttctctcttcagtttttacaactttgtgttattttcatc 458  Q
    || | | ||||||    |||||||||||||||||    |||||||||||||||||||||||||     | ||      |||||||| |||||||||||||    
T  29960446 gtatatatactcacttatgtgttgtaaataagta----cgatcaataaaaattcattagtttt-----taca------acaactttttgttattttcatc 29960530  T
Q  459 ttgct--tagaaacaacttatttttcataaacacttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    |||||  |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29960531 ttgctcttagaaataacttatttttcataagcacttccgctgtgcatagaacatagtgaattgttctaaca 29960601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 302270 - 302350
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga 291  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  302270 tattggaatatgaatcaataactgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctga 302350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 21794631 - 21794528
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||| ||||||||||||||||||||| |||||| || |||||| ||||| || ||| ||||||| |||||||| |||||| ||||||||||||||    
T  21794631 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 21794532  T
Q  369 ttac 372  Q
    ||||    
T  21794531 ttac 21794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 45485929 - 45485826
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||||||||||||||||||||||||| || ||| || ||| || |||||||| ||| ||||||| |||||||| |||||| ||||||||||||||    
T  45485929 agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 45485830  T
Q  369 ttac 372  Q
    ||||    
T  45485829 ttac 45485826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 29960258 - 29960336
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttct 289  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  29960258 tattggaatattaatcaataactgttgtttagaatttggagtgcagcttctgaacatgagcttctgaagtgctgcttct 29960336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 302372 - 302473
Alignment:
Q  271 cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtt 370  Q
    ||||||| ||||||||||||||||||||| |||||| || ||||||  ||||||| ||| ||||||| ||| |||| |||||| ||||||||||||||||    
T  302372 cttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgtt 302471  T
Q  371 ac 372  Q
    ||    
T  302472 ac 302473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 295734 - 295837
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||| ||||||||||||||||||||| |||||| || ||||||  |||||||||||  |||||| ||| | || |||||| ||||||||||||||    
T  295734 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagtttg 295833  T
Q  369 ttac 372  Q
    ||||    
T  295834 ttac 295837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 39190843 - 39190688
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaa 316  Q
    ||||||||||||||||||||| ||||| |||  |||||||| | || |||| ||  ||||||||||||| ||||| |||||||| | |   || ||||||    
T  39190843 aatattaatcaataactgttgctcagactcttaagtgcagcctctggacatcagactctgaagtgcagcgtctgaagtcttcaacatctaagtctagtaa 39190744  T
Q  317 taaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
     |||| ||| ||| | ||||| |||||||| |||||| ||||||||||||||||||    
T  39190743 caaactttggttagcatgttaaccaaggtagttagtttgttagaggagtttgttac 39190688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 43081778 - 43081675
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||||| ||||||||||||||||||||| |||||| || ||||||||||| ||| ||| | ||||| | |||||| |||||| |||| |||||||||    
T  43081778 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgttataggagtttg 43081679  T
Q  369 ttac 372  Q
    ||||    
T  43081678 ttac 43081675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 18163923 - 18164026
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    |||||||||| ||| |||||||||||||| | ||| || || ||||||||| | ||| ||| ||||||| |||||||| |||||| ||||||||||||||    
T  18163923 agcttctgaaatgctgcttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 18164022  T
Q  369 ttac 372  Q
    ||||    
T  18164023 ttac 18164026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 295654 - 295728
Alignment:
Q  217 aatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctga 291  Q
    |||||||||| |||||||||||| ||||| || |||||||||| |||||||||||||||||||| |||| |||||    
T  295654 aatattaatcgataactgttgtttagaatttgaagtgcagcttctgaacatgagcttctgaagtacagcgtctga 295728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 13273295 - 13273380
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagtta 358  Q
    |||||||||||||||||||||    |||||| |||||| || |||||| |||||||| ||| ||||||| |||||||| |||||| ||||    
T  13273295 agcttctgaagtgcagcttct----tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 13273380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 295921 - 296000
Alignment:
Q  446 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    ||||||||||||||||||   ||||||||||||||  |||| ||| |||||||||||||||||||||| | ||||||||||||    
T  295921 tgttattttcatcttgctcttaaacaacttatttt--ataagcactttccgctgtgcatagaacatagcg-attgttctaaca 296000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 527
Target Start/End: Original strand, 302558 - 302636
Alignment:
Q  448 ttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    |||||||||||||||| | ||||| ||||||||| |||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  302558 ttattttcatcttgctcataaacatcttattttt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca 302636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 44541575 - 44541492
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgt 294  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  44541575 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgt 44541492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 44541453 - 44541400
Alignment:
Q  319 aaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    |||||||||||  |||||| ||| |||| |||||| ||||||||||||||||||    
T  44541453 aaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttac 44541400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 49344 - 49474
Alignment:
Q  245 tctggagtgcagcttttgaacatgag---cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagcca 341  Q
    |||| |||||||||| ||||||| ||   ||||| | |||| |||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||    
T  49344 tctgaagtgcagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaacca 49443  T
Q  342 aggtaattagttagttagaggagtttgttac 372  Q
    ||||| |||||| ||||||| ||||||||||    
T  49444 aggtagttagtttgttagagaagtttgttac 49474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 49262 - 49337
Alignment:
Q  219 tattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgt 294  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||  ||||||||||||    
T  49262 tattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt 49337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 49537 - 49628
Alignment:
Q  402 aataaaaattcattagttttctctcttcagtttt--tacaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacactt 492  Q
    ||||||||||||||||||||||||||||||||||   | |||||| ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  49537 aataaaaattcattagttttctctcttcagttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt 49628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 28249182 - 28249312
Alignment:
Q  245 tctggagtgcagcttttgaacatgag---cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagcca 341  Q
    |||| |||||||||| ||||||| ||   ||||| | |||| |||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||    
T  28249182 tctgaagtgcagcttctgaacatcagaaacttctaatgtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaacca 28249281  T
Q  342 aggtaattagttagttagaggagtttgttac 372  Q
    ||||| |||||| ||||||| ||||||||||    
T  28249282 aggtagttagtttgttagagaagtttgttac 28249312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 28249100 - 28249175
Alignment:
Q  219 tattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagcttctgatgt 294  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||  ||||||||||||    
T  28249100 tattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt 28249175  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 28249375 - 28249466
Alignment:
Q  402 aataaaaattcattagttttctctcttcagtttt--tacaactttgtgttattttcatcttgcttagaaacaacttatttttcataaacactt 492  Q
    ||||||||||||||||||||||||||||||||||   | |||||| ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  28249375 aataaaaattcattagttttctctcttcagttttacaataactttatgtta-tttcatcttgcttagaaacagcttatttttcataagcactt 28249466  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 31888483 - 31888586
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    ||||||| ||||||||||||||||||||||| |||||  || |||||| |||||||| ||| ||||||| | |||||| |||||| ||||||| ||||||    
T  31888483 agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgttagagaagtttg 31888582  T
Q  369 ttac 372  Q
    ||||    
T  31888583 ttac 31888586  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 7501496 - 7501407
Alignment:
Q  283 agcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgttac 372  Q
    ||||||||||||||||| |||||| || |||||| |||||||| ||| ||||||| ||||| || |||||| ||||||||||||||||||    
T  7501496 agcttctgatgtcttcacaagcagagtctagtaacaaaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttac 7501407  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 9507626 - 9507726
Alignment:
Q  272 ttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta 371  Q
    ||||||||| || ||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| |||||||| |||||| |||| ||||||||||||    
T  9507626 ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttaaaggagtttgtta 9507725  T
Q  372 c 372  Q
    |    
T  9507726 c 9507726  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 34854045 - 34854146
Alignment:
Q  271 cttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtt 370  Q
    ||||||| ||||||||| ||||||||||| |||||| || ||||||||||| ||| ||| ||||||| |||||||| ||| || ||||||||||||||||    
T  34854045 cttctgatgtgcagcttttgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgttagaggagtttgtt 34854144  T
Q  371 ac 372  Q
    ||    
T  34854145 ac 34854146  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 689961 - 690036
Alignment:
Q  211 tattgcaatattaatcaataactgttgttcagaatctggagtgcagcttttgaacatgagcttctgaagtgcagctt 287  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  689961 tattggaatattaatcaataactgttgttcagaatctgaagtgcagc-ttcgaacatgagcttctgaagtgctgctt 690036  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 32090199 - 32090299
Alignment:
Q  272 ttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttgtta 371  Q
    ||||||||| |||||||||||||||||| ||| ||  | |||||| |||||| | ||| ||||||| |||| ||| |||||| |||||||||||||||||    
T  32090199 ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta 32090298  T
Q  372 c 372  Q
    |    
T  32090299 c 32090299  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 9503641 - 9503744
Alignment:
Q  269 agcttctgaagtgcagcttctgatgtcttcaaaagcagggtttagtaataaaccttgattaacgtgttagccaaggtaattagttagttagaggagtttg 368  Q
    |||||||||||| ||  |||||| ||||||| |||||| || ||||||||||| ||| ||| |||||||  |||| || |||||| ||||||||||||||    
T  9503641 agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgttagaggagtttg 9503740  T
Q  369 ttac 372  Q
    ||||    
T  9503741 ttac 9503744  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 690202 - 690282
Alignment:
Q  446 tgttattttcatcttgcttagaaacaacttatttttcataaacac-ttccgctgtgcatagaacatagtgaattgttctaaca 527  Q
    ||||||||||||||| |||  ||||||||||| ||| |||| ||| |||||||| ||||||||||||| | ||||||||||||    
T  690202 tgttattttcatcttacttttaaacaacttatattt-ataagcactttccgctgcgcatagaacatagcg-attgttctaaca 690282  T

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