View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379-Insertion-5 (Length: 546)
Name: NF4379-Insertion-5
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 40623708 - 40623325
Alignment:
| Q |
8 |
cataacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaa |
107 |
Q |
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| T |
40623708 |
cataacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaa |
40623609 |
T |
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| Q |
108 |
attcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtga |
207 |
Q |
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| T |
40623608 |
attcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtga |
40623509 |
T |
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| Q |
208 |
gaattcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcgg |
307 |
Q |
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| T |
40623508 |
gaattcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcgg |
40623409 |
T |
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| Q |
308 |
aatcaggtttcgccgtcgccgtcgtcgccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc |
400 |
Q |
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| T |
40623408 |
aatcaggtttcgccgtcg---------ccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc |
40623325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 40623246 - 40623179
Alignment:
| Q |
479 |
tcagtagtaagaataatgttaggtcatcactacattattcctaaaatttcgatagatttcttcctcat |
546 |
Q |
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| T |
40623246 |
tcagtagtaagaataatgttaggtcatcactacattattcctaaaatttcgatagatttctttctcat |
40623179 |
T |
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