View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379-Insertion-5 (Length: 546)

Name: NF4379-Insertion-5
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379-Insertion-5
NF4379-Insertion-5
[»] chr4 (2 HSPs)
chr4 (8-400)||(40623325-40623708)
chr4 (479-546)||(40623179-40623246)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 40623708 - 40623325
Alignment:
8 cataacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623708 cataacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaa 40623609  T
108 attcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623608 attcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtga 40623509  T
208 gaattcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623508 gaattcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcgg 40623409  T
308 aatcaggtttcgccgtcgccgtcgtcgccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc 400  Q
    ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623408 aatcaggtttcgccgtcg---------ccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc 40623325  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 40623246 - 40623179
Alignment:
479 tcagtagtaagaataatgttaggtcatcactacattattcctaaaatttcgatagatttcttcctcat 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
40623246 tcagtagtaagaataatgttaggtcatcactacattattcctaaaatttcgatagatttctttctcat 40623179  T

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