View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379-Insertion-6 (Length: 477)
Name: NF4379-Insertion-6
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 16957708 - 16957352
Alignment:
| Q |
8 |
cttgtgaccaaattattggtttgagatgtctgactacattatccttgtcatatgtggccataatataattccatgccgtccaccgtttctagtttcaatt |
107 |
Q |
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| T |
16957708 |
cttgtgaccaaattattggtttgagatgtctgactacattatccttgtcatatgtggccataatataattccatcccgtccaccgtttctagtttcaatt |
16957609 |
T |
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| Q |
108 |
agcaaggannnnnnncttcttacaaaactagggttagaatttacaagttgatatatatatacaaattgaagtgcggtgctgtcagtgtggtaaatatgta |
207 |
Q |
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| T |
16957608 |
agcaaggatttttttcttcttacaaaactagggttagaatttacaagttgatatatatatgcaaattgaagtgcggtgctgtcagtgtggtaaatatgta |
16957509 |
T |
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| Q |
208 |
tctctacaaatagggtaatttttgtcatacgtatggggcctgagtagtagcattccacactctcctgaatcattttgtcctgtttatttgtcttctttag |
307 |
Q |
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| T |
16957508 |
tctctacaaatagggtaatttttgtcatacgtatggggcctgagtagtagcattccacactctcctgaatcattttgtcctgtttatttgtcttctttag |
16957409 |
T |
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| Q |
308 |
gtgtctcaaaggaaatcacgtggatgtcttatatgtgttgttaggctgtaatctctc |
364 |
Q |
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| T |
16957408 |
gtgtctcaaaggaaatcacgtggatgtcttatatgtgttgttaggctgtaatctctc |
16957352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 408 - 477
Target Start/End: Complemental strand, 16957308 - 16957239
Alignment:
| Q |
408 |
acggtggaccaccaaatgtttaaacttatagaggcaatcgacgttgattctcaaaaacaaaagttcatga |
477 |
Q |
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| T |
16957308 |
acggtggaccaccaaatgtttaaacttatagaggcaatcgacgtcgattctcaaaaacaaaagttcatga |
16957239 |
T |
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