View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379-Insertion-6 (Length: 477)

Name: NF4379-Insertion-6
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379-Insertion-6
NF4379-Insertion-6
[»] chr2 (2 HSPs)
chr2 (8-364)||(16957352-16957708)
chr2 (408-477)||(16957239-16957308)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 16957708 - 16957352
Alignment:
8 cttgtgaccaaattattggtttgagatgtctgactacattatccttgtcatatgtggccataatataattccatgccgtccaccgtttctagtttcaatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
16957708 cttgtgaccaaattattggtttgagatgtctgactacattatccttgtcatatgtggccataatataattccatcccgtccaccgtttctagtttcaatt 16957609  T
108 agcaaggannnnnnncttcttacaaaactagggttagaatttacaagttgatatatatatacaaattgaagtgcggtgctgtcagtgtggtaaatatgta 207  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
16957608 agcaaggatttttttcttcttacaaaactagggttagaatttacaagttgatatatatatgcaaattgaagtgcggtgctgtcagtgtggtaaatatgta 16957509  T
208 tctctacaaatagggtaatttttgtcatacgtatggggcctgagtagtagcattccacactctcctgaatcattttgtcctgtttatttgtcttctttag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16957508 tctctacaaatagggtaatttttgtcatacgtatggggcctgagtagtagcattccacactctcctgaatcattttgtcctgtttatttgtcttctttag 16957409  T
308 gtgtctcaaaggaaatcacgtggatgtcttatatgtgttgttaggctgtaatctctc 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16957408 gtgtctcaaaggaaatcacgtggatgtcttatatgtgttgttaggctgtaatctctc 16957352  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 408 - 477
Target Start/End: Complemental strand, 16957308 - 16957239
Alignment:
408 acggtggaccaccaaatgtttaaacttatagaggcaatcgacgttgattctcaaaaacaaaagttcatga 477  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
16957308 acggtggaccaccaaatgtttaaacttatagaggcaatcgacgtcgattctcaaaaacaaaagttcatga 16957239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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