View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379-Insertion-7 (Length: 290)
Name: NF4379-Insertion-7
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 48235213 - 48235495
Alignment:
| Q |
8 |
gtttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttggcatcagagctttaagcttgaaagctctcatcgatccaatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235213 |
gtttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttggcatcagagctttaagcttgaaagctctcatcgatccaatc |
48235312 |
T |
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| Q |
108 |
atgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235313 |
atgtcatccgctgccaacacaaaccagaaaaatgacattcccactatagtttatgtcaagttggacagagacaactatccattatggaaatcattggttc |
48235412 |
T |
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| Q |
208 |
ttccattgatcagaggctgcaaacttgatgtctacatgttggggacaaaagcatgcccagatcaattcatcacatcaggtgaa |
290 |
Q |
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| T |
48235413 |
ttccattgatcagaggctacaaacttgatgtctacatgttggggacaaaagcatgcccagatcagttcatcacatcaggtgaa |
48235495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 2304674 - 2304955
Alignment:
| Q |
9 |
tttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttggcatcagagctttaagcttgaaagctctcatcgatccaatca |
108 |
Q |
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| T |
2304674 |
tttaagcacagttgctgcaatggaatatatatcacattattcaccattttctatcttggtatcagagctttaagcttgaaagctctcatcgatccaatca |
2304773 |
T |
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| Q |
109 |
tgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggttct |
208 |
Q |
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| T |
2304774 |
tgtcatccgctgccaacaccaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggttct |
2304873 |
T |
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| Q |
209 |
tccattgatcagaggctgcaaacttgatgtctacatgttggggacaaaagcatgcccagatcaattcatcacatcaggtgaa |
290 |
Q |
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| T |
2304874 |
tccattaatcagaggctgcaaacttgatgtctacatattggggacaaaagcatgcccaaatcagttcatcacatcaggtgaa |
2304955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 2314260 - 2314317
Alignment:
| Q |
9 |
tttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttg |
66 |
Q |
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| T |
2314260 |
tttaagcacagttgctgcaatggaatatatatcacattattcaccattttctatcttg |
2314317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 25814523 - 25814673
Alignment:
| Q |
57 |
ttctatcttggcatcagagct-ttaagcttgaaagctctc-atcgatccaatcatgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaat |
154 |
Q |
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|||| |||||||||||||||| ||||||||||| ||||| ||| || | |||||||| |||||| ||| ||||||| || ||||| || || ||| |
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| T |
25814523 |
ttctttcttggcatcagagctcttaagcttgaaggctcttgatccatttagccatgtcattcgctgcaaactcaaaccaaaagaatgaactcccttcaag |
25814622 |
T |
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| Q |
155 |
agtttctgtcaagttggacagagacaactatccattatggaaatcattggt |
205 |
Q |
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| T |
25814623 |
catttctgtcaagctggacagagaaaactatcctctgtggaaatcattggt |
25814673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 29226970 - 29226872
Alignment:
| Q |
107 |
catgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggt |
205 |
Q |
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| T |
29226970 |
catgtcatccgctgccaattcaaaccacaaaaatgaacttccatccactgtttctgtcaagttggacagagacaactatccattatggaaatcaatggt |
29226872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 29340269 - 29340171
Alignment:
| Q |
107 |
catgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggt |
205 |
Q |
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| T |
29340269 |
catgtcatccgctgccaattcaaaccacaaaaatgaacttccatccactgtttctgtcaagttggacagagacaactatccattatggaaatcaatggt |
29340171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 24645494 - 24645442
Alignment:
| Q |
9 |
tttaagcacagttgctgcaatagaatatatatcatattattcaccattttcta |
61 |
Q |
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| T |
24645494 |
tttaagcacagttgctgcaatggaatagatgtcacattattcaccattttcta |
24645442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 29461569 - 29461531
Alignment:
| Q |
57 |
ttctatcttggcatcagagctttaagcttgaaagctctc |
95 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
29461569 |
ttctttcttggcatcagagctttaagcttgaaagctctc |
29461531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 34770190 - 34770152
Alignment:
| Q |
57 |
ttctatcttggcatcagagctttaagcttgaaagctctc |
95 |
Q |
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|||| |||||| ||||||||||||||||||||||||||| |
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| T |
34770190 |
ttctttcttggtatcagagctttaagcttgaaagctctc |
34770152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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