View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379-Insertion-7 (Length: 290)

Name: NF4379-Insertion-7
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379-Insertion-7
NF4379-Insertion-7
[»] chr7 (1 HSPs)
chr7 (8-290)||(48235213-48235495)
[»] chr8 (3 HSPs)
chr8 (9-290)||(2304674-2304955)
chr8 (9-66)||(2314260-2314317)
chr8 (57-205)||(25814523-25814673)
[»] chr2 (2 HSPs)
chr2 (107-205)||(29226872-29226970)
chr2 (107-205)||(29340171-29340269)
[»] chr1 (2 HSPs)
chr1 (9-61)||(24645442-24645494)
chr1 (57-95)||(29461531-29461569)
[»] chr6 (1 HSPs)
chr6 (57-95)||(34770152-34770190)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 48235213 - 48235495
Alignment:
8 gtttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttggcatcagagctttaagcttgaaagctctcatcgatccaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48235213 gtttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttggcatcagagctttaagcttgaaagctctcatcgatccaatc 48235312  T
108 atgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggttc 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
48235313 atgtcatccgctgccaacacaaaccagaaaaatgacattcccactatagtttatgtcaagttggacagagacaactatccattatggaaatcattggttc 48235412  T
208 ttccattgatcagaggctgcaaacttgatgtctacatgttggggacaaaagcatgcccagatcaattcatcacatcaggtgaa 290  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
48235413 ttccattgatcagaggctacaaacttgatgtctacatgttggggacaaaagcatgcccagatcagttcatcacatcaggtgaa 48235495  T

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Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 2304674 - 2304955
Alignment:
9 tttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttggcatcagagctttaagcttgaaagctctcatcgatccaatca 108  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
2304674 tttaagcacagttgctgcaatggaatatatatcacattattcaccattttctatcttggtatcagagctttaagcttgaaagctctcatcgatccaatca 2304773  T
109 tgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggttct 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2304774 tgtcatccgctgccaacaccaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggttct 2304873  T
209 tccattgatcagaggctgcaaacttgatgtctacatgttggggacaaaagcatgcccagatcaattcatcacatcaggtgaa 290  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
2304874 tccattaatcagaggctgcaaacttgatgtctacatattggggacaaaagcatgcccaaatcagttcatcacatcaggtgaa 2304955  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 2314260 - 2314317
Alignment:
9 tttaagcacagttgctgcaatagaatatatatcatattattcaccattttctatcttg 66  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
2314260 tttaagcacagttgctgcaatggaatatatatcacattattcaccattttctatcttg 2314317  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 25814523 - 25814673
Alignment:
57 ttctatcttggcatcagagct-ttaagcttgaaagctctc-atcgatccaatcatgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaat 154  Q
    |||| |||||||||||||||| ||||||||||| |||||  ||| ||  |  |||||||| |||||| ||| ||||||| || ||||| || ||  |||     
25814523 ttctttcttggcatcagagctcttaagcttgaaggctcttgatccatttagccatgtcattcgctgcaaactcaaaccaaaagaatgaactcccttcaag 25814622  T
155 agtttctgtcaagttggacagagacaactatccattatggaaatcattggt 205  Q
      ||||||||||| |||||||||| ||||||||  | ||||||||||||||    
25814623 catttctgtcaagctggacagagaaaactatcctctgtggaaatcattggt 25814673  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 29226970 - 29226872
Alignment:
107 catgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggt 205  Q
    ||||||||||||||||||  ||||||| |||||||| |||||  | |  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
29226970 catgtcatccgctgccaattcaaaccacaaaaatgaacttccatccactgtttctgtcaagttggacagagacaactatccattatggaaatcaatggt 29226872  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 29340269 - 29340171
Alignment:
107 catgtcatccgctgccaacacaaaccagaaaaatgaccttcccacaatagtttctgtcaagttggacagagacaactatccattatggaaatcattggt 205  Q
    ||||||||||||||||||  ||||||| |||||||| |||||  | |  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
29340269 catgtcatccgctgccaattcaaaccacaaaaatgaacttccatccactgtttctgtcaagttggacagagacaactatccattatggaaatcaatggt 29340171  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 24645494 - 24645442
Alignment:
9 tttaagcacagttgctgcaatagaatatatatcatattattcaccattttcta 61  Q
    ||||||||||||||||||||| ||||| || ||| ||||||||||||||||||    
24645494 tttaagcacagttgctgcaatggaatagatgtcacattattcaccattttcta 24645442  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 29461569 - 29461531
Alignment:
57 ttctatcttggcatcagagctttaagcttgaaagctctc 95  Q
    |||| ||||||||||||||||||||||||||||||||||    
29461569 ttctttcttggcatcagagctttaagcttgaaagctctc 29461531  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 34770190 - 34770152
Alignment:
57 ttctatcttggcatcagagctttaagcttgaaagctctc 95  Q
    |||| |||||| |||||||||||||||||||||||||||    
34770190 ttctttcttggtatcagagctttaagcttgaaagctctc 34770152  T

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