View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379_high_1 (Length: 414)

Name: NF4379_high_1
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379_high_1
NF4379_high_1
[»] chr8 (1 HSPs)
chr8 (5-396)||(14304828-14305219)
[»] chr6 (1 HSPs)
chr6 (17-392)||(16401738-16402113)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Complemental strand, 14305219 - 14304828
Alignment:
5 ggtagattattctgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaac 104  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14305219 ggtaaattatgctgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaac 14305120  T
105 agattctacaaagcaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaac 204  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14305119 aaattctacaaagtaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaac 14305020  T
205 cattgtgccgaatagaagaccgagaattggaagatcgattgcggtgtaagcttcgtccggacttataattctgaatattaccataagcattgcacctaat 304  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
14305019 cattgtgccgaatagaagaccaagaatcggaagatcgattgcggcgtaagcttcgtccggacttataactctgaatattaccataagcatcgcacctaat 14304920  T
305 agggatcctgctgttctaccaattggtagaaaaggaactgcaggaaaaactgctaatatccagaaaattgcaaaggcaattgaacctagaac 396  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
14304919 agggatcctgctgttctaccaattggtagaaaaggaactgctggaaaaactgctaatatccagaaaattgcaaaggcaattgaacctagaac 14304828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 16401738 - 16402113
Alignment:
17 tgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaacagattctacaaa 116  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||  ||||||||||||||||||||||| |||||||||||||    
16401738 tgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagctgaaatcaagcagattctacaaa 16401837  T
117 gcaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaaccattgtgccgaa 216  Q
    | ||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
16401838 gtaaatcctttgctcctttacttttccaagaaagtaattttcctatgtatttgaacatgtctgctctttcaagataaacactaacaaccattgtgccgaa 16401937  T
217 tagaagaccgagaattggaagatcgattgcggtgtaagcttcgtccggacttataattctgaatattaccataagcattgcacctaatagggatcctgct 316  Q
     ||||||||||||||||||||||||||||| | ||| ||||| |||||| | |||| ||  |||||||||||||||||||||||||| || |||||||||    
16401938 aagaagaccgagaattggaagatcgattgcagcgtacgcttcttccggagtaataactcgaaatattaccataagcattgcacctaaaagagatcctgct 16402037  T
317 gttctaccaattggtagaaaaggaactgcaggaaaaactgctaatatccagaaaattgcaaaggcaattgaaccta 392  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||    
16402038 gttctacctattggtagaaatggaactgctggaaaaactgctaatatccagaaaatggcaaaggctattgaaccta 16402113  T

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