View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379_high_2 (Length: 242)
Name: NF4379_high_2
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 35556587 - 35556498
Alignment:
| Q |
147 |
aagtcctttcagtacaagtagattcctataaggacctgtttggtcaagcatattaattaagcgcttattgcacaaatactgtttaagtat |
236 |
Q |
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| T |
35556587 |
aagtcctttcagtacaagtagattcctataaggacctgtttggtcaagcatattaattaagcgcttattgcacaaatactgtttaagtat |
35556498 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35556733 - 35556657
Alignment:
| Q |
1 |
ctttctgtagctatataagtattaacaatagctccaattttgaagtcagagaagttattatcaaggttaatctattt |
77 |
Q |
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| T |
35556733 |
ctttctgtagctatataagtattaacaatagctccaattttgaagtcagagaagttattatcaaggttaatctattt |
35556657 |
T |
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