View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379_low_2 (Length: 418)

Name: NF4379_low_2
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379_low_2
NF4379_low_2
[»] chr4 (2 HSPs)
chr4 (49-399)||(40623704-40624054)
chr4 (82-277)||(47392084-47392278)
[»] scaffold0848 (1 HSPs)
scaffold0848 (90-277)||(3605-3791)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 49 - 399
Target Start/End: Complemental strand, 40624054 - 40623704
Alignment:
49 gattcaacaacagcagctcccctcgcacctgcactccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacacc 148  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40624054 gattcaacagcagcagctcccctcgcacccgcactccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacacc 40623955  T
149 acattgcatcacctttactcaaattcggcctaacctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaac 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623954 acattgcatcacctttactcaaattcggcctaacctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaac 40623855  T
249 cggttcaagctcatccatattctcaccctcacgagcaaaaccagcacaaacagcaccattaacaccaacaccaacataagcaccactattactattcaaa 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
40623854 cggttcaagctcatccatattctcaccctcacgagcaaaaccagcacaaacagcaccattaacaccaacaccaacataagcaccgctattactattcaaa 40623755  T
349 aatgccaacgaattatgcaaaatattcgtcaaaacatccatcccaccataa 399  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||    
40623754 aacgccaacgaattatgcaaaatattcgtcaaaacatccatcccaccataa 40623704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 82 - 277
Target Start/End: Original strand, 47392084 - 47392278
Alignment:
82 ctccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacaccacattgcatcacctttactcaaattcggcctaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
47392084 ctccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattggcaaacaccacattgcatcac-tttactcaaattcggcctaa 47392182  T
182 cctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
47392183 cctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatacttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct 47392278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0848 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 90 - 277
Target Start/End: Complemental strand, 3791 - 3605
Alignment:
90 cacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacaccacattgcatcacctttactcaaattcggcctaacctgttgc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
3791 cacaggaatctctatagtactagctttcccaacatgaagatcactcattggcaaacaccacattgcatcac-tttactcaaattcggcctaacctgttgc 3693  T
190 aacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct 277  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
3692 aacaaacacaccatcccagccaaagaatactcctccaaatacttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct 3605  T

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