View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379_low_2 (Length: 418)
Name: NF4379_low_2
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379_low_2 |
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| [»] scaffold0848 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 49 - 399
Target Start/End: Complemental strand, 40624054 - 40623704
Alignment:
| Q |
49 |
gattcaacaacagcagctcccctcgcacctgcactccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacacc |
148 |
Q |
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| T |
40624054 |
gattcaacagcagcagctcccctcgcacccgcactccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacacc |
40623955 |
T |
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| Q |
149 |
acattgcatcacctttactcaaattcggcctaacctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaac |
248 |
Q |
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| T |
40623954 |
acattgcatcacctttactcaaattcggcctaacctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaac |
40623855 |
T |
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| Q |
249 |
cggttcaagctcatccatattctcaccctcacgagcaaaaccagcacaaacagcaccattaacaccaacaccaacataagcaccactattactattcaaa |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40623854 |
cggttcaagctcatccatattctcaccctcacgagcaaaaccagcacaaacagcaccattaacaccaacaccaacataagcaccgctattactattcaaa |
40623755 |
T |
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| Q |
349 |
aatgccaacgaattatgcaaaatattcgtcaaaacatccatcccaccataa |
399 |
Q |
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| T |
40623754 |
aacgccaacgaattatgcaaaatattcgtcaaaacatccatcccaccataa |
40623704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 82 - 277
Target Start/End: Original strand, 47392084 - 47392278
Alignment:
| Q |
82 |
ctccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacaccacattgcatcacctttactcaaattcggcctaa |
181 |
Q |
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| T |
47392084 |
ctccccggcacaggaatctctatagtactagctttcccaacatgaagatcactcattggcaaacaccacattgcatcac-tttactcaaattcggcctaa |
47392182 |
T |
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| Q |
182 |
cctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct |
277 |
Q |
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| T |
47392183 |
cctgttgcaacaaacacaccatcccagccaaagaatactcctccaaatacttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct |
47392278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0848 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0848
Description:
Target: scaffold0848; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 90 - 277
Target Start/End: Complemental strand, 3791 - 3605
Alignment:
| Q |
90 |
cacaggaatctctatagtactagctttcccaacatgaagatcactcattagcaaacaccacattgcatcacctttactcaaattcggcctaacctgttgc |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3791 |
cacaggaatctctatagtactagctttcccaacatgaagatcactcattggcaaacaccacattgcatcac-tttactcaaattcggcctaacctgttgc |
3693 |
T |
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| Q |
190 |
aacaaacacaccatcccagccaaagaatactcctccaaatgcttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3692 |
aacaaacacaccatcccagccaaagaatactcctccaaatacttcaaatcagcgaaaaccggttcaagctcatccatattctcaccct |
3605 |
T |
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