View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379_low_3 (Length: 414)
Name: NF4379_low_3
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Complemental strand, 14305219 - 14304828
Alignment:
| Q |
5 |
ggtagattattctgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaac |
104 |
Q |
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| T |
14305219 |
ggtaaattatgctgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaac |
14305120 |
T |
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| Q |
105 |
agattctacaaagcaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaac |
204 |
Q |
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| T |
14305119 |
aaattctacaaagtaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaac |
14305020 |
T |
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| Q |
205 |
cattgtgccgaatagaagaccgagaattggaagatcgattgcggtgtaagcttcgtccggacttataattctgaatattaccataagcattgcacctaat |
304 |
Q |
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| T |
14305019 |
cattgtgccgaatagaagaccaagaatcggaagatcgattgcggcgtaagcttcgtccggacttataactctgaatattaccataagcatcgcacctaat |
14304920 |
T |
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| Q |
305 |
agggatcctgctgttctaccaattggtagaaaaggaactgcaggaaaaactgctaatatccagaaaattgcaaaggcaattgaacctagaac |
396 |
Q |
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| T |
14304919 |
agggatcctgctgttctaccaattggtagaaaaggaactgctggaaaaactgctaatatccagaaaattgcaaaggcaattgaacctagaac |
14304828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 16401738 - 16402113
Alignment:
| Q |
17 |
tgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaacagattctacaaa |
116 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
16401738 |
tgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagctgaaatcaagcagattctacaaa |
16401837 |
T |
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| Q |
117 |
gcaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaaccattgtgccgaa |
216 |
Q |
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| T |
16401838 |
gtaaatcctttgctcctttacttttccaagaaagtaattttcctatgtatttgaacatgtctgctctttcaagataaacactaacaaccattgtgccgaa |
16401937 |
T |
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| Q |
217 |
tagaagaccgagaattggaagatcgattgcggtgtaagcttcgtccggacttataattctgaatattaccataagcattgcacctaatagggatcctgct |
316 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||| |||||| | |||| || |||||||||||||||||||||||||| || ||||||||| |
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| T |
16401938 |
aagaagaccgagaattggaagatcgattgcagcgtacgcttcttccggagtaataactcgaaatattaccataagcattgcacctaaaagagatcctgct |
16402037 |
T |
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| Q |
317 |
gttctaccaattggtagaaaaggaactgcaggaaaaactgctaatatccagaaaattgcaaaggcaattgaaccta |
392 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
16402038 |
gttctacctattggtagaaatggaactgctggaaaaactgctaatatccagaaaatggcaaaggctattgaaccta |
16402113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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