View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4379_low_4 (Length: 398)
Name: NF4379_low_4
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4379_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 36 - 395
Target Start/End: Original strand, 37887535 - 37887888
Alignment:
| Q |
36 |
tcatggaaaagggcaggaacaagaagagaccggttaagctctccctatcggagatcgaagcagcaaaatttctcgtacaactcagcagcggagatttcga |
135 |
Q |
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| T |
37887535 |
tcatggaaaagggcaggaacaagaagaggccggttaagctctccctatcggagatcgaagcagcaaaatttctcgtacaactcagcagcggagatttcga |
37887634 |
T |
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| Q |
136 |
agaagatcaaaacagcaataacaacagcaatagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgctgtatcatcatctactgtt |
235 |
Q |
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| T |
37887635 |
agaagatcaaaacagcaataacaa------tagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgttgtatcatcatctactgtt |
37887728 |
T |
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| Q |
236 |
ttgtcagattctgaaagttgcgttgcaagaacaaataaaaggtatcgttacgttaatattgatgagttatatagagctacatctcccttgcctcctgtta |
335 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37887729 |
ttgtcagattctgaaagttgctttgcaagaacaaataagaggtatcgttacgttaatattgatgagttatatagagctacatctcctttgcctcctgtta |
37887828 |
T |
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| Q |
336 |
aagccaggatgatcaagagaagaaagtgataactgatgaatgatgtcttaacatatatat |
395 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
37887829 |
aagccaggatgatcaagagaagaaaatgataaccgatgaatgatatcttaacatatatat |
37887888 |
T |
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