View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379_low_4 (Length: 398)

Name: NF4379_low_4
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379_low_4
NF4379_low_4
[»] chr4 (1 HSPs)
chr4 (36-395)||(37887535-37887888)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 36 - 395
Target Start/End: Original strand, 37887535 - 37887888
Alignment:
36 tcatggaaaagggcaggaacaagaagagaccggttaagctctccctatcggagatcgaagcagcaaaatttctcgtacaactcagcagcggagatttcga 135  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37887535 tcatggaaaagggcaggaacaagaagaggccggttaagctctccctatcggagatcgaagcagcaaaatttctcgtacaactcagcagcggagatttcga 37887634  T
136 agaagatcaaaacagcaataacaacagcaatagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgctgtatcatcatctactgtt 235  Q
    ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
37887635 agaagatcaaaacagcaataacaa------tagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgttgtatcatcatctactgtt 37887728  T
236 ttgtcagattctgaaagttgcgttgcaagaacaaataaaaggtatcgttacgttaatattgatgagttatatagagctacatctcccttgcctcctgtta 335  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
37887729 ttgtcagattctgaaagttgctttgcaagaacaaataagaggtatcgttacgttaatattgatgagttatatagagctacatctcctttgcctcctgtta 37887828  T
336 aagccaggatgatcaagagaagaaagtgataactgatgaatgatgtcttaacatatatat 395  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||    
37887829 aagccaggatgatcaagagaagaaaatgataaccgatgaatgatatcttaacatatatat 37887888  T

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