View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4379_low_5 (Length: 242)

Name: NF4379_low_5
Description: NF4379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4379_low_5
NF4379_low_5
[»] chr4 (2 HSPs)
chr4 (147-236)||(35556498-35556587)
chr4 (1-77)||(35556657-35556733)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 35556587 - 35556498
Alignment:
147 aagtcctttcagtacaagtagattcctataaggacctgtttggtcaagcatattaattaagcgcttattgcacaaatactgtttaagtat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35556587 aagtcctttcagtacaagtagattcctataaggacctgtttggtcaagcatattaattaagcgcttattgcacaaatactgtttaagtat 35556498  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35556733 - 35556657
Alignment:
1 ctttctgtagctatataagtattaacaatagctccaattttgaagtcagagaagttattatcaaggttaatctattt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35556733 ctttctgtagctatataagtattaacaatagctccaattttgaagtcagagaagttattatcaaggttaatctattt 35556657  T

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