View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380-Insertion-1 (Length: 1079)

Name: NF4380-Insertion-1
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380-Insertion-1
NF4380-Insertion-1
[»] chr4 (9 HSPs)
chr4 (7-1074)||(54009818-54010888)
chr4 (811-911)||(4423157-4423258)
chr4 (833-908)||(12276850-12276926)
chr4 (793-906)||(24980631-24980745)
chr4 (815-910)||(30848592-30848690)
chr4 (814-876)||(5024659-5024721)
chr4 (792-853)||(40391245-40391306)
chr4 (811-907)||(54235227-54235324)
chr4 (832-867)||(3249714-3249749)
[»] chr7 (8 HSPs)
chr7 (834-912)||(18731990-18732069)
chr7 (797-871)||(5026134-5026208)
chr7 (813-910)||(16866403-16866501)
chr7 (801-871)||(6803305-6803375)
chr7 (831-912)||(30794469-30794551)
chr7 (834-926)||(32652392-32652485)
chr7 (831-907)||(44816495-44816572)
chr7 (831-926)||(23971170-23971267)
[»] chr1 (7 HSPs)
chr1 (813-912)||(37918914-37919014)
chr1 (811-912)||(3739814-3739916)
chr1 (805-912)||(29855060-29855168)
chr1 (811-907)||(30693343-30693440)
chr1 (811-910)||(29855060-29855160)
chr1 (804-912)||(3739815-3739924)
chr1 (841-910)||(27527707-27527777)
[»] chr3 (6 HSPs)
chr3 (815-912)||(32221470-32221568)
chr3 (815-911)||(26914451-26914547)
chr3 (811-910)||(31280163-31280263)
chr3 (794-861)||(37330917-37330985)
chr3 (876-912)||(15282639-15282675)
chr3 (815-867)||(40905814-40905866)
[»] chr5 (14 HSPs)
chr5 (804-912)||(34252718-34252827)
chr5 (845-912)||(12619661-12619729)
chr5 (811-910)||(39030571-39030671)
chr5 (804-910)||(33669929-33670036)
chr5 (811-871)||(38958069-38958129)
chr5 (804-910)||(9956500-9956607)
chr5 (805-906)||(39030569-39030671)
chr5 (811-869)||(42708590-42708648)
chr5 (805-921)||(25467097-25467214)
chr5 (811-907)||(30293384-30293481)
chr5 (811-871)||(19644440-19644500)
chr5 (811-871)||(42324922-42324982)
chr5 (834-912)||(17555944-17556023)
chr5 (834-906)||(2424444-2424517)
[»] chr6 (5 HSPs)
chr6 (801-911)||(31323812-31323923)
chr6 (811-906)||(35003767-35003863)
chr6 (842-912)||(30531217-30531288)
chr6 (805-871)||(28004665-28004731)
chr6 (820-912)||(33822305-33822398)
[»] chr2 (18 HSPs)
chr2 (804-906)||(43398844-43398947)
chr2 (804-912)||(31469072-31469181)
chr2 (815-907)||(35311190-35311283)
chr2 (811-911)||(38935364-38935465)
chr2 (811-871)||(2884264-2884324)
chr2 (805-912)||(10459268-10459376)
chr2 (804-871)||(17437168-17437235)
chr2 (805-921)||(16180426-16180543)
chr2 (812-907)||(11386318-11386414)
chr2 (794-912)||(944762-944881)
chr2 (811-864)||(7932751-7932804)
chr2 (804-912)||(31469071-31469180)
chr2 (831-910)||(43042194-43042274)
chr2 (811-871)||(44726824-44726884)
chr2 (842-912)||(24037584-24037655)
chr2 (811-861)||(15660703-15660753)
chr2 (847-912)||(16564420-16564486)
chr2 (811-908)||(41374533-41374631)
[»] chr8 (9 HSPs)
chr8 (831-912)||(11114264-11114346)
chr8 (811-871)||(29111001-29111061)
chr8 (811-922)||(8777777-8777889)
chr8 (801-906)||(33557781-33557887)
chr8 (811-908)||(35901039-35901137)
chr8 (816-861)||(13209977-13210022)
chr8 (811-871)||(31236867-31236926)
chr8 (811-924)||(9548038-9548151)
chr8 (800-865)||(28725583-28725648)
[»] scaffold0097 (1 HSPs)
scaffold0097 (831-871)||(37939-37979)
[»] scaffold0126 (1 HSPs)
scaffold0126 (811-870)||(28175-28234)
[»] scaffold0009 (1 HSPs)
scaffold0009 (834-871)||(51263-51300)


Alignment Details
Target: chr4 (Bit Score: 941; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 7 - 1074
Target Start/End: Complemental strand, 54010888 - 54009818
Alignment:
Q  7 agaaacatcttttgagatgtcaactccgtggacagttctactacaacttgtgaaattagtctatgtaattgagctcgaaaataaataagaatcaactttc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010888 agaaacatattttgagatgtcaactccgtggacagttctactacaacttgtgaaattagtctatgtaattgagctcgaaaataaataagaatcaactttc 54010789  T
Q  107 caaatttagctataatataagtacgtttaaatttgagtatgaaccatgtttagaagttgagaatattaatgtaatttgcataatggttacatgtcttgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010788 caaatttagctataatataagtacgtttaaatttgagtatgaaccatgtttagaagttgagaatattaatgtaatttgcataatggttacatgtcttgat 54010689  T
Q  207 acaggcctggattgttggcaagtggataacaccaagagagcaaagttgggcaccaagtggaacccattttcatcaatttgttgtcccaccaattttatca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010688 acaggcctggattgttggcaagtggataacaccaagagagcaaagttgggcaccaagtggaacccattttcatcaatttgttgtcccaccaattttatca 54010589  T
Q  307 ttcagaagagattgtacttatggtgatctagcagccatgagattaccagaagacgtggaaggtcttggttgctgtgaggtaagcaaatcaatcaacttca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010588 ttcagaagagattgtacttatggtgatctagcagccatgagattaccagaagacgtggaaggtcttggttgctgtgaggtaagcaaatcaatcaacttca 54010489  T
Q  407 ttaatatttttcacatgtataaattgaaaaaggatattaattactatatgttggcgaatttttattgatgtagtacacaatggatagaggagtagttcat 506  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  54010488 ttaatatttttctcatgtataaattgaaaaaggatattaattactatatgttggtgaa-ttttattgatgtagtacacaatggatagaggagtagttcat 54010390  T
Q  507 gcatgccatgctggaggagtggtacatagtcttgaaggttggactcatcatgaagttggtgccttagatgttaacaggattgatcttgtgtgggaagcag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010389 gcatgccatgctggaggagtggtacatagtcttgaaggttggactcatcatgaagttggtgccttagatgttaacaggattgatcttgtgtgggaagcag 54010290  T
Q  607 cactcaaacatggcttaaggccagtttcatcaagtccacacacaaagacagattaaaaatatttgtcacaaacaagcaactttctaaagttgtgtcttaa 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54010289 cactcaaacatggcttaaggccagtttcatcaagtccacacacaaaaacagattaaaaatatttgtcataaacaagcaactttctaaagttgtgtcttaa 54010190  T
Q  707 ttatatgttttggtatactattgcatgttctgttgggattggccatcatgtgtggttgtatttattattcaagtttctttactatattactctttctgtc 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010189 ttatatgttttggtatactattgcatgttctgttgggattggccatcatgtgtggttgtatttattattcaagtttctttactatattactctttctgtc 54010090  T
Q  807 ccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaacacttatgttgatccatttttgcttatatttt 906  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  54010089 ccacaatataagcaaaaatttataaacaaaacttaatgtatttgattcaaaatttataccaaatagaacacttatgttgaccaatttttgcttatatttt 54009990  T
Q  907 gggacgcagaaagtatttttatgtttttgtatacgatcatattgatcacaaacacattgacag-tattcataatcata-cataaatgaagtttaagc-aa 1003  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||    
T  54009989 gggacgcagaaagta-ttttatg-ttttgtatacgatcatattgatcacaaacacattgacagttattcataatcataccataaatgaagtttaagcaaa 54009892  T
Q  1004 actagccagtt-acacccctcaggttgcctcatatatttttcattttgttctttat---atgaaatgtcatcctt 1074  Q
    ||||||||||| ||| ||| | | |||| |||||||||||||||||||||||||||    |||||||||||||||    
T  54009891 actagccagttcaca-cccactgattgcttcatatatttttcattttgttctttattaattgaaatgtcatcctt 54009818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 811 - 911
Target Start/End: Original strand, 4423157 - 4423258
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttggg 909  Q
    ||||||||  |||||| || || |||| ||||| |||||| |||||||||| ||||||||| | || ||||| |||||||||||||||||| ||||||||    
T  4423157 aatataagtgaaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttggg 4423256  T
Q  910 ac 911  Q
    ||    
T  4423257 ac 4423258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 833 - 908
Target Start/End: Original strand, 12276850 - 12276926
Alignment:
Q  833 caaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgg 908  Q
    ||||| |||||||||||| |||||||||||||| ||||| | | ||||||||||| | |||||||||||||||||||    
T  12276850 caaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttgg 12276926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 793 - 906
Target Start/End: Complemental strand, 24980745 - 24980631
Alignment:
Q  793 ttactctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccat 891  Q
    ||||||| |||||| || ||| ||||||||||||| | ||||||| ||||||||||| || |||||||| |  || ||| | | ||||||||||||||||    
T  24980745 ttactctctctgtctcaaaatgtaagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccat 24980646  T
Q  892 ttttgcttatatttt 906  Q
    |||| |||| |||||    
T  24980645 ttttacttacatttt 24980631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 815 - 910
Target Start/End: Complemental strand, 30848690 - 30848592
Alignment:
Q  815 taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttatacc--aaatagaaca-cttatgttgatccatttttgcttatattttggga 910  Q
    ||||||||||||  | ||||||| ||||||||||| ||||||||||| |||   | ||| | || |||||||||||||||||||||||| |||||||||    
T  30848690 taagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacattttggga 30848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 814 - 876
Target Start/End: Original strand, 5024659 - 5024721
Alignment:
Q  814 ataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca 876  Q
    ||||||||||||| ||||| |||| |||||||||||  ||||||||||||| |||||| ||||    
T  5024659 ataagcaaaaattgataaataaaagttaatgtatttatttcaaaatttatatcaaatacaaca 5024721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 792 - 853
Target Start/End: Original strand, 40391245 - 40391306
Alignment:
Q  792 attactctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggtt 853  Q
    ||||||| |||||||||| |||||||| ||||||  || ||||||| |||||||||||||||    
T  40391245 attactccttctgtcccaaaatataagtaaaaatcgatcaacaaaaattaatgtatttggtt 40391306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 811 - 907
Target Start/End: Complemental strand, 54235324 - 54235227
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttg 907  Q
    ||||||| ||||||||  | ||||||| ||||||||||||||||||||||| ||| ||||| | | | |||| ||||  |||||||||||| ||||||    
T  54235324 aatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttg 54235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 867
Target Start/End: Original strand, 3249714 - 3249749
Alignment:
Q  832 acaaaatttaatgtatttggttcaaaatttatacca 867  Q
    |||||| |||||||||||||||||||||||||||||    
T  3249714 acaaaagttaatgtatttggttcaaaatttatacca 3249749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 834 - 912
Target Start/End: Complemental strand, 18732069 - 18731990
Alignment:
Q  834 aaaatttaatgtatttggttcaaaatttataccaaatagaacactt-atgttgatccatttttgcttatattttgggacg 912  Q
    |||| ||||||||||||||||||||||||||||| ||| | || || |||||||||||||||||||||||||||||||||    
T  18732069 aaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg 18731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 797 - 871
Target Start/End: Original strand, 5026134 - 5026208
Alignment:
Q  797 tctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    ||||||||||||| ||||||||||||||||  | ||||||| ||||| ||||| || |||||||| |||||||||    
T  5026134 tctttctgtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaata 5026208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 813 - 910
Target Start/End: Complemental strand, 16866501 - 16866403
Alignment:
Q  813 tataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggga 910  Q
    ||||||||||||||  | ||||||| ||||||||||||||| ||||||| |||| |||| |   |||| | |||||| |||||||||||||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttggga 16866403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 801 - 871
Target Start/End: Original strand, 6803305 - 6803375
Alignment:
Q  801 tctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    ||||||||| ||||||||||||| ||  | ||||||| ||||||||||| ||| ||||||| |||||||||    
T  6803305 tctgtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaata 6803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 831 - 912
Target Start/End: Original strand, 30794469 - 30794551
Alignment:
Q  831 aacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttgggacg 912  Q
    ||||||||||||| |||||| |||||||||| ||||||||| |  || ||||||||||||| |||| |||| |||||| ||||    
T  30794469 aacaaaatttaatatatttgattcaaaatttgtaccaaatacattcatttatgttgatccaattttacttacattttgagacg 30794551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 834 - 926
Target Start/End: Complemental strand, 32652485 - 32652392
Alignment:
Q  834 aaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacgcagaaagtattttt 926  Q
    |||| ||||||||||||||||||| ||| ||||||||| | | | |||||||||   |||||| |||| |||||| |||||||||| |||||||    
T  32652485 aaaaattaatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttgagacgcagaaaatattttt 32652392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 831 - 907
Target Start/End: Original strand, 44816495 - 44816572
Alignment:
Q  831 aacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttg 907  Q
    ||||||| ||||||||||||||||||||||| ||||||||| | ||  |||| || || |||||||||||| ||||||    
T  44816495 aacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 831 - 926
Target Start/End: Complemental strand, 23971267 - 23971170
Alignment:
Q  831 aacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata-ttttgggacgcagaaagtattttt 926  Q
    ||||||| | ||| ||||| ||||||||||| ||||||||| | | |||||| |||||  ||||||||||||| ||||||||   |||||||||||||    
T  23971267 aacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttttgggataaagaaagtattttt 23971170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 813 - 912
Target Start/End: Complemental strand, 37919014 - 37918914
Alignment:
Q  813 tataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggac 911  Q
    ||||||| ||||||| | ||||||| | ||||||||||||| |||||||||| |||||| | | |||||||||||| |||||||||||| ||||||||||    
T  37919014 tataagcgaaaatttgtcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttgggac 37918915  T
Q  912 g 912  Q
    |    
T  37918914 g 37918914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 811 - 912
Target Start/End: Complemental strand, 3739916 - 3739814
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg 909  Q
    ||||||||||||||||  | ||||||| ||||||||||||||| ||||||| ||||||||| |   ||||  ||||| | ||||||||||||||||||||    
T  3739916 aatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttggg 3739817  T
Q  910 acg 912  Q
    |||    
T  3739816 acg 3739814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 805 - 912
Target Start/End: Original strand, 29855060 - 29855168
Alignment:
Q  805 tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatat 903  Q
    ||||| ||||||||| |||||| || ||||||| || |||||||||||| ||||||| ||| ||||| |   |||| |||||||| ||||||||||||||    
T  29855060 tcccaaaatataagcgaaaattaatcaacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatat 29855159  T
Q  904 tttgggacg 912  Q
    ||| |||||    
T  29855160 tttaggacg 29855168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 811 - 907
Target Start/End: Original strand, 30693343 - 30693440
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttg 907  Q
    |||||||  ||||||| || ||||||| |||||||||||| |||||||||| ||||||||| | ||  |||||||||| ||||||| |||| ||||||    
T  30693343 aatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttacttacattttg 30693440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 910
Target Start/End: Complemental strand, 29855160 - 29855060
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggg 909  Q
    |||||||||||||||| || ||||||| ||||||||||| || |||| |||  |||||||| | | |||| |||||||  ||||| ||||||||||||||    
T  29855160 aatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttggg 29855061  T
Q  910 a 910  Q
    |    
T  29855060 a 29855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 804 - 912
Target Start/End: Original strand, 3739815 - 3739924
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttata 902  Q
    |||||| ||||||||||||||||  | ||| ||| |||||||||||||| |||| |||  |||||||| |   |||| |||||| | |||||||||||||    
T  3739815 gtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 3739914  T
Q  903 ttttgggacg 912  Q
    |||| |||||    
T  3739915 ttttaggacg 3739924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 910
Target Start/End: Complemental strand, 27527777 - 27527707
Alignment:
Q  841 aatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggga 910  Q
    ||||||||||||||||||||||||||| ||| | | |||||| || | ||||||||  |||||||||||||    
T  27527777 aatgtatttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatattttggga 27527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 815 - 912
Target Start/End: Complemental strand, 32221568 - 32221470
Alignment:
Q  815 taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg 912  Q
    ||||||||||||  | ||||||| ||||||||||||||||||||||| ||||||||| | | | ||||| ||||| ||||||||||| |||||||||||    
T  32221568 taagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggacg 32221470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 815 - 911
Target Start/End: Complemental strand, 26914547 - 26914451
Alignment:
Q  815 taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggac 911  Q
    |||||||||||| || ||||||| ||||||||| ||||||||||||||||| ||||| | | ||||| |||| |||||||||||||| ||||||||||    
T  26914547 taagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttg-tccatttttgcttacattttgggac 26914451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 811 - 910
Target Start/End: Original strand, 31280163 - 31280263
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg 909  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||| ||| |   | |||||||||||||||||| ||||  |||||||    
T  31280163 aatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttggg 31280262  T
Q  910 a 910  Q
    |    
T  31280263 a 31280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 794 - 861
Target Start/End: Original strand, 37330917 - 37330985
Alignment:
Q  794 tactctttctgtcccacaatataagcaaaaatttataaaca-aaatttaatgtatttggttcaaaattt 861  Q
    |||||| ||||||||| ||||||| ||||||||||| || | ||||||||||||| |||||||||||||    
T  37330917 tactctctctgtcccaaaatataaacaaaaatttattaatataaatttaatgtatatggttcaaaattt 37330985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 876 - 912
Target Start/End: Complemental strand, 15282675 - 15282639
Alignment:
Q  876 acttatgttgatccatttttgcttatattttgggacg 912  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15282675 acttatgttgatccatttttgtttatattttgggacg 15282639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 867
Target Start/End: Original strand, 40905814 - 40905866
Alignment:
Q  815 taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttatacca 867  Q
    ||||||||||||  | ||||||| ||||| |||||||||||||||||||||||    
T  40905814 taagcaaaaattggtcaacaaaagttaatttatttggttcaaaatttatacca 40905866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 804 - 912
Target Start/End: Original strand, 34252718 - 34252827
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata 902  Q
    |||||| ||| ||||||||||||  | ||||||| ||||||||||||||||||||||||| ||| ||  | | ||||||||| | ||||||||||||| |    
T  34252718 gtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttaca 34252817  T
Q  903 ttttgggacg 912  Q
    ||||||||||    
T  34252818 ttttgggacg 34252827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 845 - 912
Target Start/End: Original strand, 12619661 - 12619729
Alignment:
Q  845 tatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgggacg 912  Q
    |||||| ||||||||||||| |||||| | || ||||||||||||||||||||||||||||||| ||||    
T  12619661 tatttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatattttgagacg 12619729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 910
Target Start/End: Original strand, 39030571 - 39030671
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg 909  Q
    ||||||||||||||||  | ||||||| ||||||||||||||| ||||||| ||||||||| |   |||| ||||||   ||||||||||||||||||||    
T  39030571 aatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttggg 39030670  T
Q  910 a 910  Q
    |    
T  39030671 a 39030671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 804 - 910
Target Start/End: Complemental strand, 33670036 - 33669929
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttata 902  Q
    |||||| ||| ||||||||||||  | || |||| ||||||||||||||| ||||||| ||||| ||| |   ||||||||||| ||||||||||||| |    
T  33670036 gtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttaca 33669937  T
Q  903 ttttggga 910  Q
    ||||||||    
T  33669936 ttttggga 33669929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 38958069 - 38958129
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||||||| ||||||| || ||||||| ||||||||||||||||||| ||| |||||||||    
T  38958069 aatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaata 38958129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 804 - 910
Target Start/End: Complemental strand, 9956607 - 9956500
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata 902  Q
    |||||| ||| |||| |||||||  | ||||||| |||||||||||| ||||||||||||| || ||| | | || |||||||| |||||||| |||| |    
T  9956607 gtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccatttttacttaca 9956508  T
Q  903 ttttggga 910  Q
    ||||||||    
T  9956507 ttttggga 9956500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 805 - 906
Target Start/End: Complemental strand, 39030671 - 39030569
Alignment:
Q  805 tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatat 903  Q
    ||||| ||||||||||||||||  | ||||||| |||||||||||||| |||| |||  |||||||| |   |||| |||||| | ||||||||||||||    
T  39030671 tcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatat 39030572  T
Q  904 ttt 906  Q
    |||    
T  39030571 ttt 39030569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 869
Target Start/End: Original strand, 42708590 - 42708648
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaa 869  Q
    |||||| ||||||||| || ||||||| ||||||||||| ||| |||||||||||||||    
T  42708590 aatatacgcaaaaattaatcaacaaaagttaatgtatttagttgaaaatttataccaaa 42708648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 805 - 921
Target Start/End: Complemental strand, 25467214 - 25467097
Alignment:
Q  805 tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatat 903  Q
    ||||| ||| |||| ||||||| ||  | |||| ||||||||| |||||||||||||||| |  ||| | | ||||||||| ||||||||||||||| ||    
T  25467214 tcccaaaatctaaggaaaaattgatcgataaaagttaatgtatgtggttcaaaatttatatcggatacatcaacttatgttaatccatttttgcttacat 25467115  T
Q  904 tttgggacgcagaaagta 921  Q
    |||| |||| ||| ||||    
T  25467114 tttgagacggagagagta 25467097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 811 - 907
Target Start/End: Original strand, 30293384 - 30293481
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttg 907  Q
    |||||||| |||| || || ||||||| | |||||||||| ||||||||||||| |||||| | | || ||||||||  ||||||| |||||||||||    
T  30293384 aatataagtaaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 19644500 - 19644440
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||||||| || |||| || ||||||| |||| |||||||||||||||||||||| |||||    
T  19644500 aatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaatttatactaaata 19644440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 42324982 - 42324922
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||||||| |||||||  | ||||||| |||||||||||| || |||||||||||||||||    
T  42324982 aatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaata 42324922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 834 - 912
Target Start/End: Complemental strand, 17556023 - 17555944
Alignment:
Q  834 aaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg 912  Q
    |||| ||||||||| |||||||||||||||| |||||| | | ||||| |||||  ||||||| ||||||||||| ||||    
T  17556023 aaaagttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttgagacg 17555944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 906
Target Start/End: Complemental strand, 2424517 - 2424444
Alignment:
Q  834 aaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatatttt 906  Q
    |||| ||||||||||||||||||||||| ||||| ||| | || |||||||| |   |||||||||||||||||    
T  2424517 aaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 801 - 911
Target Start/End: Original strand, 31323812 - 31323923
Alignment:
Q  801 tctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgctt 899  Q
    |||| |||| ||| ||||||||||||  | ||||||| ||||||||||| ||||||||||| ||||| ||| | | ||||||||||| | ||||||||||    
T  31323812 tctgacccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgctt 31323911  T
Q  900 atattttgggac 911  Q
    | ||||||||||    
T  31323912 acattttgggac 31323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 906
Target Start/End: Original strand, 35003767 - 35003863
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatatttt 906  Q
    |||||||| |||||||  | || |||| |||||||||||| |||||||||| ||| ||||| | | |||||||||||| |||||||||||| |||||    
T  35003767 aatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgcttacatttt 35003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 842 - 912
Target Start/End: Original strand, 30531217 - 30531288
Alignment:
Q  842 atgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgggacg 912  Q
    |||||||||||||||| ||| ||||||||| | || ||||||||||  |||||||||||| |||||||||||    
T  30531217 atgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacg 30531288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 805 - 871
Target Start/End: Complemental strand, 28004731 - 28004665
Alignment:
Q  805 tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    ||||| ||||||||  ||||||  | ||||||| ||||||||||||| ||||||||| |||||||||    
T  28004731 tcccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaata 28004665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 820 - 912
Target Start/End: Original strand, 33822305 - 33822398
Alignment:
Q  820 aaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg 912  Q
    ||||||| || ||||||| ||||| ||||| ||||||||||| || |||||| | | |||||| || |||||||||| |||| |||||| ||||    
T  33822305 aaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttgagacg 33822398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 804 - 906
Target Start/End: Complemental strand, 43398947 - 43398844
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata 902  Q
    |||||| ||| ||| ||||||||| | ||||||| ||||||||||||||||||||||| ||||||||| | | |||||| |||| |||||||| |||| |    
T  43398947 gtcccaaaatctaaacaaaaatttgttaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttaca 43398848  T
Q  903 tttt 906  Q
    ||||    
T  43398847 tttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 804 - 912
Target Start/End: Original strand, 31469072 - 31469181
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttata 902  Q
    |||||| ||||||||||||||||  | ||||||| ||||||||||||||| ||||||| || |||||| |   ||||  ||||| | |||||||||||||    
T  31469072 gtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttata 31469171  T
Q  903 ttttgggacg 912  Q
    ||||||||||    
T  31469172 ttttgggacg 31469181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 815 - 907
Target Start/End: Complemental strand, 35311283 - 35311190
Alignment:
Q  815 taagcaaaaattta-taaacaaaatttaatgtatttggttcaaaatttataccaaatagaacacttatgttgatccatttttgcttatattttg 907  Q
    |||| ||||||||| | ||||||| ||||||||||||||||||||||| ||| | ||| |  ||||||||||| ||||||||||||| ||||||    
T  35311283 taagaaaaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtacaagatatataacttatgttgacccatttttgcttacattttg 35311190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 811 - 911
Target Start/End: Complemental strand, 38935465 - 38935364
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttggg 909  Q
    ||||||| ||||||||  | ||||||| ||||||||||| ||||||||| | || |||||| | || ||||||||||  |||||||||||||||||||||    
T  38935465 aatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttggg 38935366  T
Q  910 ac 911  Q
    ||    
T  38935365 ac 38935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 2884264 - 2884324
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||||||| |||||||| | ||||||| |||||||||||||||||||||||||| ||||||    
T  2884264 aatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaata 2884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 805 - 912
Target Start/End: Original strand, 10459268 - 10459376
Alignment:
Q  805 tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatat 903  Q
    ||||| ||||||||||||||||  | ||||||| ||||||||||||||||||||||| || || ||  | | ||||||||||| | || |||||||| ||    
T  10459268 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacat 10459367  T
Q  904 tttgggacg 912  Q
    |||||||||    
T  10459368 tttgggacg 10459376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 804 - 871
Target Start/End: Complemental strand, 17437235 - 17437168
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||||| ||||||| ||||||||| | ||||||| ||||||||||| ||||||||||| |||||||||    
T  17437235 gtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaata 17437168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 805 - 921
Target Start/End: Complemental strand, 16180543 - 16180426
Alignment:
Q  805 tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatat 903  Q
    ||||| |||||||| |||| ||  | ||||||| ||||||||||||||||||||||||||   |||| | | | |||||||||   ||||||||||| ||    
T  16180543 tcccaaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacat 16180444  T
Q  904 tttgggacgcagaaagta 921  Q
    ||||||||| ||||||||    
T  16180443 tttgggacggagaaagta 16180426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 812 - 907
Target Start/End: Original strand, 11386318 - 11386414
Alignment:
Q  812 atataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttg 907  Q
    |||||| |||||||| || ||||||| ||||| |||||  |||||||||| || |||||| | || |||||||||||| | ||||||||||||||||    
T  11386318 atataaacaaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 794 - 912
Target Start/End: Original strand, 944762 - 944881
Alignment:
Q  794 tactctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatt 892  Q
    ||||||||| ||  || |||||||||||||||  || || |||| ||||||||||| ||||||||||| ||||||||| | | |||||||||||   |||    
T  944762 tactctttccgtttcaaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatt 944861  T
Q  893 tttgcttatattttgggacg 912  Q
    ||| |||| |||||| ||||    
T  944862 tttacttacattttgagacg 944881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 811 - 864
Target Start/End: Original strand, 7932751 - 7932804
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttata 864  Q
    ||||||||||||||||  | ||||||| |||| |||||||||||||||||||||    
T  7932751 aatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttata 7932804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 804 - 912
Target Start/End: Complemental strand, 31469180 - 31469071
Alignment:
Q  804 gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttata 902  Q
    |||||| ||||||||||||||||  | ||| ||| |||||||||||| | |||| |||  |||||||| |  | ||| |||||| | |||||||||||||    
T  31469180 gtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 31469081  T
Q  903 ttttgggacg 912  Q
    ||||||||||    
T  31469080 ttttgggacg 31469071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 910
Target Start/End: Original strand, 43042194 - 43042274
Alignment:
Q  831 aacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggga 910  Q
    |||||||||||||||||| ||||||||||||||| || ||| | | |||| |||| |  |||||||||||| |||||||||    
T  43042194 aacaaaatttaatgtattcggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttggga 43042274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 44726884 - 44726824
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||||||| ||||||| || ||||||| ||||||||||| ||| |||||||||| ||||||    
T  44726884 aatataagaaaaaattgatcaacaaaaattaatgtatttagtttaaaatttatatcaaata 44726824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 842 - 912
Target Start/End: Complemental strand, 24037655 - 24037584
Alignment:
Q  842 atgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg 912  Q
    |||||||| ||||||||||| ||||||||| | | |||||||||||  |||||||||||| ||||| |||||    
T  24037655 atgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacg 24037584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 861
Target Start/End: Complemental strand, 15660753 - 15660703
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaattt 861  Q
    |||||||||||||||| || |||| || |||||||||||| ||||||||||    
T  15660753 aatataagcaaaaattgatcaacacaaattaatgtatttgattcaaaattt 15660703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 847 - 912
Target Start/End: Original strand, 16564420 - 16564486
Alignment:
Q  847 tttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg 912  Q
    ||||||||||||||| ||||||||| | | |||||||||||  ||||||| |||| |||||||||||    
T  16564420 tttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacg 16564486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 908
Target Start/End: Complemental strand, 41374631 - 41374533
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgg 908  Q
    |||||||| |||||||  | ||| ||| |||||||||||| |||||| ||||||||||||| | | |||| |||| |  |||||||||||| |||||||    
T  41374631 aatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgcttacattttgg 41374533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 831 - 912
Target Start/End: Original strand, 11114264 - 11114346
Alignment:
Q  831 aacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgggacg 912  Q
    ||||||| ||||||||||  ||| ||||||||||||||||| | || |||||||||||| |||||| ||||||||||||||||    
T  11114264 aacaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggacg 11114346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 29111061 - 29111001
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    ||||||| |||||||| || ||| ||| |||||||||||||||||||||||||||||||||    
T  29111061 aatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaata 29111001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 922
Target Start/End: Original strand, 8777777 - 8777889
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg 909  Q
    ||||||| |||||||| || ||||||| ||||| ||||||||||||||||||||  ||||| |   ||||||||| |||||||||| ||||  |||| ||    
T  8777777 aatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgttaatccatttttacttaattttttgg 8777876  T
Q  910 acgcagaaagtat 922  Q
    ||| ||| |||||    
T  8777877 acgaagagagtat 8777889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 801 - 906
Target Start/End: Complemental strand, 33557887 - 33557781
Alignment:
Q  801 tctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgctt 899  Q
    ||||||| | || ||||| ||||||| || || |||| ||||||||||| ||||||||||| || |||||| | | |||||||||||||  |||||||||    
T  33557887 tctgtcctaaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgctt 33557788  T
Q  900 atatttt 906  Q
    | |||||    
T  33557787 acatttt 33557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 908
Target Start/End: Complemental strand, 35901137 - 35901039
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgg 908  Q
    |||||||||||||||   | ||||||| |||||||||| || ||||||||| ||| || || | || ||||||||||  ||||||||||||||||||||    
T  35901137 aatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 35901039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 861
Target Start/End: Original strand, 13209977 - 13210022
Alignment:
Q  816 aagcaaaaatttataaacaaaatttaatgtatttggttcaaaattt 861  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||    
T  13209977 aagcaaaaattgatcaacaaaagttaatgtatttggttcaaaattt 13210022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 31236867 - 31236926
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    ||||||||||||||| | |||| ||| ||||||||||||||| ||||||||| ||||||||    
T  31236867 aatataagcaaaaatatctaaa-aaagtttaatgtatttggtccaaaatttacaccaaata 31236926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 924
Target Start/End: Complemental strand, 9548151 - 9548038
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggg 909  Q
    ||||||| ||||||||  | ||||||| ||| | ||||||||||||||||| ||| ||||| | | |||||||||||  ||||||| |||  ||||||||    
T  9548151 aatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt-cttgcattttggg 9548053  T
Q  910 acgcagaaagtattt 924  Q
    ||| ||| |||||||    
T  9548052 acgaagagagtattt 9548038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 865
Target Start/End: Original strand, 28725583 - 28725648
Alignment:
Q  800 ttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttatac 865  Q
    |||||||||| ||| ||||||||||||  | || |||||||| |||||||| |||| |||||||||    
T  28725583 ttctgtcccaaaatgtaagcaaaaattggtcaataaaatttattgtatttgattcagaatttatac 28725648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 871
Target Start/End: Original strand, 37939 - 37979
Alignment:
Q  831 aacaaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  37939 aacaaaagttaatgtatttggtttaaaatttataccaaata 37979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 870
Target Start/End: Original strand, 28175 - 28234
Alignment:
Q  811 aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaat 870  Q
    |||||||  ||||||| || ||||||| ||||||||||||||||||||||  ||||||||    
T  28175 aatataaataaaaattgattaacaaaagttaatgtatttggttcaaaattcgtaccaaat 28234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 871
Target Start/End: Complemental strand, 51300 - 51263
Alignment:
Q  834 aaaatttaatgtatttggttcaaaatttataccaaata 871  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  51300 aaaaattaatgtatttagttcaaaatttataccaaata 51263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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