View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4380-Insertion-1 (Length: 1079)
Name: NF4380-Insertion-1
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4380-Insertion-1 |
 |  |
|
[»] scaffold0097 (1 HSPs) |
 |  |  |
|
[»] scaffold0126 (1 HSPs) |
 |  |  |
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[»] scaffold0009 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr4 (Bit Score: 941; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 7 - 1074
Target Start/End: Complemental strand, 54010888 - 54009818
Alignment:
Q |
7 |
agaaacatcttttgagatgtcaactccgtggacagttctactacaacttgtgaaattagtctatgtaattgagctcgaaaataaataagaatcaactttc |
106 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010888 |
agaaacatattttgagatgtcaactccgtggacagttctactacaacttgtgaaattagtctatgtaattgagctcgaaaataaataagaatcaactttc |
54010789 |
T |
 |
Q |
107 |
caaatttagctataatataagtacgtttaaatttgagtatgaaccatgtttagaagttgagaatattaatgtaatttgcataatggttacatgtcttgat |
206 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010788 |
caaatttagctataatataagtacgtttaaatttgagtatgaaccatgtttagaagttgagaatattaatgtaatttgcataatggttacatgtcttgat |
54010689 |
T |
 |
Q |
207 |
acaggcctggattgttggcaagtggataacaccaagagagcaaagttgggcaccaagtggaacccattttcatcaatttgttgtcccaccaattttatca |
306 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010688 |
acaggcctggattgttggcaagtggataacaccaagagagcaaagttgggcaccaagtggaacccattttcatcaatttgttgtcccaccaattttatca |
54010589 |
T |
 |
Q |
307 |
ttcagaagagattgtacttatggtgatctagcagccatgagattaccagaagacgtggaaggtcttggttgctgtgaggtaagcaaatcaatcaacttca |
406 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010588 |
ttcagaagagattgtacttatggtgatctagcagccatgagattaccagaagacgtggaaggtcttggttgctgtgaggtaagcaaatcaatcaacttca |
54010489 |
T |
 |
Q |
407 |
ttaatatttttcacatgtataaattgaaaaaggatattaattactatatgttggcgaatttttattgatgtagtacacaatggatagaggagtagttcat |
506 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010488 |
ttaatatttttctcatgtataaattgaaaaaggatattaattactatatgttggtgaa-ttttattgatgtagtacacaatggatagaggagtagttcat |
54010390 |
T |
 |
Q |
507 |
gcatgccatgctggaggagtggtacatagtcttgaaggttggactcatcatgaagttggtgccttagatgttaacaggattgatcttgtgtgggaagcag |
606 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010389 |
gcatgccatgctggaggagtggtacatagtcttgaaggttggactcatcatgaagttggtgccttagatgttaacaggattgatcttgtgtgggaagcag |
54010290 |
T |
 |
Q |
607 |
cactcaaacatggcttaaggccagtttcatcaagtccacacacaaagacagattaaaaatatttgtcacaaacaagcaactttctaaagttgtgtcttaa |
706 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
T |
54010289 |
cactcaaacatggcttaaggccagtttcatcaagtccacacacaaaaacagattaaaaatatttgtcataaacaagcaactttctaaagttgtgtcttaa |
54010190 |
T |
 |
Q |
707 |
ttatatgttttggtatactattgcatgttctgttgggattggccatcatgtgtggttgtatttattattcaagtttctttactatattactctttctgtc |
806 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54010189 |
ttatatgttttggtatactattgcatgttctgttgggattggccatcatgtgtggttgtatttattattcaagtttctttactatattactctttctgtc |
54010090 |
T |
 |
Q |
807 |
ccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaacacttatgttgatccatttttgcttatatttt |
906 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
T |
54010089 |
ccacaatataagcaaaaatttataaacaaaacttaatgtatttgattcaaaatttataccaaatagaacacttatgttgaccaatttttgcttatatttt |
54009990 |
T |
 |
Q |
907 |
gggacgcagaaagtatttttatgtttttgtatacgatcatattgatcacaaacacattgacag-tattcataatcata-cataaatgaagtttaagc-aa |
1003 |
Q |
|
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |
|
|
T |
54009989 |
gggacgcagaaagta-ttttatg-ttttgtatacgatcatattgatcacaaacacattgacagttattcataatcataccataaatgaagtttaagcaaa |
54009892 |
T |
 |
Q |
1004 |
actagccagtt-acacccctcaggttgcctcatatatttttcattttgttctttat---atgaaatgtcatcctt |
1074 |
Q |
|
|
||||||||||| ||| ||| | | |||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
54009891 |
actagccagttcaca-cccactgattgcttcatatatttttcattttgttctttattaattgaaatgtcatcctt |
54009818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 811 - 911
Target Start/End: Original strand, 4423157 - 4423258
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
|||||||| |||||| || || |||| ||||| |||||| |||||||||| ||||||||| | || ||||| |||||||||||||||||| |||||||| |
|
|
T |
4423157 |
aatataagtgaaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttggg |
4423256 |
T |
 |
Q |
910 |
ac |
911 |
Q |
|
|
|| |
|
|
T |
4423257 |
ac |
4423258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 833 - 908
Target Start/End: Original strand, 12276850 - 12276926
Alignment:
Q |
833 |
caaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgg |
908 |
Q |
|
|
||||| |||||||||||| |||||||||||||| ||||| | | ||||||||||| | ||||||||||||||||||| |
|
|
T |
12276850 |
caaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttgg |
12276926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 793 - 906
Target Start/End: Complemental strand, 24980745 - 24980631
Alignment:
Q |
793 |
ttactctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccat |
891 |
Q |
|
|
||||||| |||||| || ||| ||||||||||||| | ||||||| ||||||||||| || |||||||| | || ||| | | |||||||||||||||| |
|
|
T |
24980745 |
ttactctctctgtctcaaaatgtaagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccat |
24980646 |
T |
 |
Q |
892 |
ttttgcttatatttt |
906 |
Q |
|
|
|||| |||| ||||| |
|
|
T |
24980645 |
ttttacttacatttt |
24980631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 815 - 910
Target Start/End: Complemental strand, 30848690 - 30848592
Alignment:
Q |
815 |
taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttatacc--aaatagaaca-cttatgttgatccatttttgcttatattttggga |
910 |
Q |
|
|
|||||||||||| | ||||||| ||||||||||| ||||||||||| ||| | ||| | || |||||||||||||||||||||||| ||||||||| |
|
|
T |
30848690 |
taagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacattttggga |
30848592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 814 - 876
Target Start/End: Original strand, 5024659 - 5024721
Alignment:
Q |
814 |
ataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca |
876 |
Q |
|
|
||||||||||||| ||||| |||| ||||||||||| ||||||||||||| |||||| |||| |
|
|
T |
5024659 |
ataagcaaaaattgataaataaaagttaatgtatttatttcaaaatttatatcaaatacaaca |
5024721 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 792 - 853
Target Start/End: Original strand, 40391245 - 40391306
Alignment:
Q |
792 |
attactctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggtt |
853 |
Q |
|
|
||||||| |||||||||| |||||||| |||||| || ||||||| ||||||||||||||| |
|
|
T |
40391245 |
attactccttctgtcccaaaatataagtaaaaatcgatcaacaaaaattaatgtatttggtt |
40391306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 811 - 907
Target Start/End: Complemental strand, 54235324 - 54235227
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttg |
907 |
Q |
|
|
||||||| |||||||| | ||||||| ||||||||||||||||||||||| ||| ||||| | | | |||| |||| |||||||||||| |||||| |
|
|
T |
54235324 |
aatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttg |
54235227 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 867
Target Start/End: Original strand, 3249714 - 3249749
Alignment:
Q |
832 |
acaaaatttaatgtatttggttcaaaatttatacca |
867 |
Q |
|
|
|||||| ||||||||||||||||||||||||||||| |
|
|
T |
3249714 |
acaaaagttaatgtatttggttcaaaatttatacca |
3249749 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 834 - 912
Target Start/End: Complemental strand, 18732069 - 18731990
Alignment:
Q |
834 |
aaaatttaatgtatttggttcaaaatttataccaaatagaacactt-atgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
|||| ||||||||||||||||||||||||||||| ||| | || || ||||||||||||||||||||||||||||||||| |
|
|
T |
18732069 |
aaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg |
18731990 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 797 - 871
Target Start/End: Original strand, 5026134 - 5026208
Alignment:
Q |
797 |
tctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
||||||||||||| |||||||||||||||| | ||||||| ||||| ||||| || |||||||| ||||||||| |
|
|
T |
5026134 |
tctttctgtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaata |
5026208 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 813 - 910
Target Start/End: Complemental strand, 16866501 - 16866403
Alignment:
Q |
813 |
tataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggga |
910 |
Q |
|
|
|||||||||||||| | ||||||| ||||||||||||||| ||||||| |||| |||| | |||| | |||||| ||||||||||||||||||||| |
|
|
T |
16866501 |
tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttggga |
16866403 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 801 - 871
Target Start/End: Original strand, 6803305 - 6803375
Alignment:
Q |
801 |
tctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
||||||||| ||||||||||||| || | ||||||| ||||||||||| ||| ||||||| ||||||||| |
|
|
T |
6803305 |
tctgtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaata |
6803375 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 831 - 912
Target Start/End: Original strand, 30794469 - 30794551
Alignment:
Q |
831 |
aacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
||||||||||||| |||||| |||||||||| ||||||||| | || ||||||||||||| |||| |||| |||||| |||| |
|
|
T |
30794469 |
aacaaaatttaatatatttgattcaaaatttgtaccaaatacattcatttatgttgatccaattttacttacattttgagacg |
30794551 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 834 - 926
Target Start/End: Complemental strand, 32652485 - 32652392
Alignment:
Q |
834 |
aaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacgcagaaagtattttt |
926 |
Q |
|
|
|||| ||||||||||||||||||| ||| ||||||||| | | | ||||||||| |||||| |||| |||||| |||||||||| ||||||| |
|
|
T |
32652485 |
aaaaattaatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttgagacgcagaaaatattttt |
32652392 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 831 - 907
Target Start/End: Original strand, 44816495 - 44816572
Alignment:
Q |
831 |
aacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttg |
907 |
Q |
|
|
||||||| ||||||||||||||||||||||| ||||||||| | || |||| || || |||||||||||| |||||| |
|
|
T |
44816495 |
aacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg |
44816572 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 831 - 926
Target Start/End: Complemental strand, 23971267 - 23971170
Alignment:
Q |
831 |
aacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata-ttttgggacgcagaaagtattttt |
926 |
Q |
|
|
||||||| | ||| ||||| ||||||||||| ||||||||| | | |||||| ||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
T |
23971267 |
aacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttttgggataaagaaagtattttt |
23971170 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 813 - 912
Target Start/End: Complemental strand, 37919014 - 37918914
Alignment:
Q |
813 |
tataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggac |
911 |
Q |
|
|
||||||| ||||||| | ||||||| | ||||||||||||| |||||||||| |||||| | | |||||||||||| |||||||||||| |||||||||| |
|
|
T |
37919014 |
tataagcgaaaatttgtcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttgggac |
37918915 |
T |
 |
Q |
912 |
g |
912 |
Q |
|
|
| |
|
|
T |
37918914 |
g |
37918914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 811 - 912
Target Start/End: Complemental strand, 3739916 - 3739814
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
|||||||||||||||| | ||||||| ||||||||||||||| ||||||| ||||||||| | |||| ||||| | |||||||||||||||||||| |
|
|
T |
3739916 |
aatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttggg |
3739817 |
T |
 |
Q |
910 |
acg |
912 |
Q |
|
|
||| |
|
|
T |
3739816 |
acg |
3739814 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 805 - 912
Target Start/End: Original strand, 29855060 - 29855168
Alignment:
Q |
805 |
tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatat |
903 |
Q |
|
|
||||| ||||||||| |||||| || ||||||| || |||||||||||| ||||||| ||| ||||| | |||| |||||||| |||||||||||||| |
|
|
T |
29855060 |
tcccaaaatataagcgaaaattaatcaacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatat |
29855159 |
T |
 |
Q |
904 |
tttgggacg |
912 |
Q |
|
|
||| ||||| |
|
|
T |
29855160 |
tttaggacg |
29855168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 811 - 907
Target Start/End: Original strand, 30693343 - 30693440
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttg |
907 |
Q |
|
|
||||||| ||||||| || ||||||| |||||||||||| |||||||||| ||||||||| | || |||||||||| ||||||| |||| |||||| |
|
|
T |
30693343 |
aatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcatttttacttacattttg |
30693440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 910
Target Start/End: Complemental strand, 29855160 - 29855060
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
|||||||||||||||| || ||||||| ||||||||||| || |||| ||| |||||||| | | |||| ||||||| ||||| |||||||||||||| |
|
|
T |
29855160 |
aatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttggg |
29855061 |
T |
 |
Q |
910 |
a |
910 |
Q |
|
|
| |
|
|
T |
29855060 |
a |
29855060 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 804 - 912
Target Start/End: Original strand, 3739815 - 3739924
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| |||||||||||||||| | ||| ||| |||||||||||||| |||| ||| |||||||| | |||| |||||| | ||||||||||||| |
|
|
T |
3739815 |
gtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata |
3739914 |
T |
 |
Q |
903 |
ttttgggacg |
912 |
Q |
|
|
|||| ||||| |
|
|
T |
3739915 |
ttttaggacg |
3739924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 910
Target Start/End: Complemental strand, 27527777 - 27527707
Alignment:
Q |
841 |
aatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggga |
910 |
Q |
|
|
||||||||||||||||||||||||||| ||| | | |||||| || | |||||||| ||||||||||||| |
|
|
T |
27527777 |
aatgtatttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatattttggga |
27527707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 815 - 912
Target Start/End: Complemental strand, 32221568 - 32221470
Alignment:
Q |
815 |
taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
|||||||||||| | ||||||| ||||||||||||||||||||||| ||||||||| | | | ||||| ||||| ||||||||||| ||||||||||| |
|
|
T |
32221568 |
taagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggacg |
32221470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 815 - 911
Target Start/End: Complemental strand, 26914547 - 26914451
Alignment:
Q |
815 |
taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggac |
911 |
Q |
|
|
|||||||||||| || ||||||| ||||||||| ||||||||||||||||| ||||| | | ||||| |||| |||||||||||||| |||||||||| |
|
|
T |
26914547 |
taagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttg-tccatttttgcttacattttgggac |
26914451 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 811 - 910
Target Start/End: Original strand, 31280163 - 31280263
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
|||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||||||||| |||| ||||||| |
|
|
T |
31280163 |
aatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttggg |
31280262 |
T |
 |
Q |
910 |
a |
910 |
Q |
|
|
| |
|
|
T |
31280263 |
a |
31280263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 794 - 861
Target Start/End: Original strand, 37330917 - 37330985
Alignment:
Q |
794 |
tactctttctgtcccacaatataagcaaaaatttataaaca-aaatttaatgtatttggttcaaaattt |
861 |
Q |
|
|
|||||| ||||||||| ||||||| ||||||||||| || | ||||||||||||| ||||||||||||| |
|
|
T |
37330917 |
tactctctctgtcccaaaatataaacaaaaatttattaatataaatttaatgtatatggttcaaaattt |
37330985 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 876 - 912
Target Start/End: Complemental strand, 15282675 - 15282639
Alignment:
Q |
876 |
acttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
||||||||||||||||||||| ||||||||||||||| |
|
|
T |
15282675 |
acttatgttgatccatttttgtttatattttgggacg |
15282639 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 867
Target Start/End: Original strand, 40905814 - 40905866
Alignment:
Q |
815 |
taagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttatacca |
867 |
Q |
|
|
|||||||||||| | ||||||| ||||| ||||||||||||||||||||||| |
|
|
T |
40905814 |
taagcaaaaattggtcaacaaaagttaatttatttggttcaaaatttatacca |
40905866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 804 - 912
Target Start/End: Original strand, 34252718 - 34252827
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| ||| |||||||||||| | ||||||| ||||||||||||||||||||||||| ||| || | | ||||||||| | ||||||||||||| | |
|
|
T |
34252718 |
gtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttaca |
34252817 |
T |
 |
Q |
903 |
ttttgggacg |
912 |
Q |
|
|
|||||||||| |
|
|
T |
34252818 |
ttttgggacg |
34252827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 845 - 912
Target Start/End: Original strand, 12619661 - 12619729
Alignment:
Q |
845 |
tatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
|||||| ||||||||||||| |||||| | || ||||||||||||||||||||||||||||||| |||| |
|
|
T |
12619661 |
tatttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatattttgagacg |
12619729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 910
Target Start/End: Original strand, 39030571 - 39030671
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
|||||||||||||||| | ||||||| ||||||||||||||| ||||||| ||||||||| | |||| |||||| |||||||||||||||||||| |
|
|
T |
39030571 |
aatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttggg |
39030670 |
T |
 |
Q |
910 |
a |
910 |
Q |
|
|
| |
|
|
T |
39030671 |
a |
39030671 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 804 - 910
Target Start/End: Complemental strand, 33670036 - 33669929
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| ||| |||||||||||| | || |||| ||||||||||||||| ||||||| ||||| ||| | ||||||||||| ||||||||||||| | |
|
|
T |
33670036 |
gtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttaca |
33669937 |
T |
 |
Q |
903 |
ttttggga |
910 |
Q |
|
|
|||||||| |
|
|
T |
33669936 |
ttttggga |
33669929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 38958069 - 38958129
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||||||| ||||||| || ||||||| ||||||||||||||||||| ||| ||||||||| |
|
|
T |
38958069 |
aatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaata |
38958129 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 804 - 910
Target Start/End: Complemental strand, 9956607 - 9956500
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| ||| |||| ||||||| | ||||||| |||||||||||| ||||||||||||| || ||| | | || |||||||| |||||||| |||| | |
|
|
T |
9956607 |
gtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccatttttacttaca |
9956508 |
T |
 |
Q |
903 |
ttttggga |
910 |
Q |
|
|
|||||||| |
|
|
T |
9956507 |
ttttggga |
9956500 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 805 - 906
Target Start/End: Complemental strand, 39030671 - 39030569
Alignment:
Q |
805 |
tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatat |
903 |
Q |
|
|
||||| |||||||||||||||| | ||||||| |||||||||||||| |||| ||| |||||||| | |||| |||||| | |||||||||||||| |
|
|
T |
39030671 |
tcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatat |
39030572 |
T |
 |
Q |
904 |
ttt |
906 |
Q |
|
|
||| |
|
|
T |
39030571 |
ttt |
39030569 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 869
Target Start/End: Original strand, 42708590 - 42708648
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaa |
869 |
Q |
|
|
|||||| ||||||||| || ||||||| ||||||||||| ||| ||||||||||||||| |
|
|
T |
42708590 |
aatatacgcaaaaattaatcaacaaaagttaatgtatttagttgaaaatttataccaaa |
42708648 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 805 - 921
Target Start/End: Complemental strand, 25467214 - 25467097
Alignment:
Q |
805 |
tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatat |
903 |
Q |
|
|
||||| ||| |||| ||||||| || | |||| ||||||||| |||||||||||||||| | ||| | | ||||||||| ||||||||||||||| || |
|
|
T |
25467214 |
tcccaaaatctaaggaaaaattgatcgataaaagttaatgtatgtggttcaaaatttatatcggatacatcaacttatgttaatccatttttgcttacat |
25467115 |
T |
 |
Q |
904 |
tttgggacgcagaaagta |
921 |
Q |
|
|
|||| |||| ||| |||| |
|
|
T |
25467114 |
tttgagacggagagagta |
25467097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 811 - 907
Target Start/End: Original strand, 30293384 - 30293481
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttg |
907 |
Q |
|
|
|||||||| |||| || || ||||||| | |||||||||| ||||||||||||| |||||| | | || |||||||| ||||||| ||||||||||| |
|
|
T |
30293384 |
aatataagtaaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg |
30293481 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 19644500 - 19644440
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||||||| || |||| || ||||||| |||| |||||||||||||||||||||| ||||| |
|
|
T |
19644500 |
aatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaatttatactaaata |
19644440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 42324982 - 42324922
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||||||| ||||||| | ||||||| |||||||||||| || ||||||||||||||||| |
|
|
T |
42324982 |
aatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaata |
42324922 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 834 - 912
Target Start/End: Complemental strand, 17556023 - 17555944
Alignment:
Q |
834 |
aaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
|||| ||||||||| |||||||||||||||| |||||| | | ||||| ||||| ||||||| ||||||||||| |||| |
|
|
T |
17556023 |
aaaagttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttgagacg |
17555944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 906
Target Start/End: Complemental strand, 2424517 - 2424444
Alignment:
Q |
834 |
aaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatatttt |
906 |
Q |
|
|
|||| ||||||||||||||||||||||| ||||| ||| | || |||||||| | ||||||||||||||||| |
|
|
T |
2424517 |
aaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt |
2424444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 801 - 911
Target Start/End: Original strand, 31323812 - 31323923
Alignment:
Q |
801 |
tctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgctt |
899 |
Q |
|
|
|||| |||| ||| |||||||||||| | ||||||| ||||||||||| ||||||||||| ||||| ||| | | ||||||||||| | |||||||||| |
|
|
T |
31323812 |
tctgacccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgctt |
31323911 |
T |
 |
Q |
900 |
atattttgggac |
911 |
Q |
|
|
| |||||||||| |
|
|
T |
31323912 |
acattttgggac |
31323923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 906
Target Start/End: Original strand, 35003767 - 35003863
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatatttt |
906 |
Q |
|
|
|||||||| ||||||| | || |||| |||||||||||| |||||||||| ||| ||||| | | |||||||||||| |||||||||||| ||||| |
|
|
T |
35003767 |
aatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgcttacatttt |
35003863 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 842 - 912
Target Start/End: Original strand, 30531217 - 30531288
Alignment:
Q |
842 |
atgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
|||||||||||||||| ||| ||||||||| | || |||||||||| |||||||||||| ||||||||||| |
|
|
T |
30531217 |
atgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacg |
30531288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 805 - 871
Target Start/End: Complemental strand, 28004731 - 28004665
Alignment:
Q |
805 |
tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
||||| |||||||| |||||| | ||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
T |
28004731 |
tcccaaaatataagggaaaattagtcaacaaaagttaatgtatttggctcaaaatttgtaccaaata |
28004665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 820 - 912
Target Start/End: Original strand, 33822305 - 33822398
Alignment:
Q |
820 |
aaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
||||||| || ||||||| ||||| ||||| ||||||||||| || |||||| | | |||||| || |||||||||| |||| |||||| |||| |
|
|
T |
33822305 |
aaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttgagacg |
33822398 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 804 - 906
Target Start/End: Complemental strand, 43398947 - 43398844
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| ||| ||| ||||||||| | ||||||| ||||||||||||||||||||||| ||||||||| | | |||||| |||| |||||||| |||| | |
|
|
T |
43398947 |
gtcccaaaatctaaacaaaaatttgttaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttaca |
43398848 |
T |
 |
Q |
903 |
tttt |
906 |
Q |
|
|
|||| |
|
|
T |
43398847 |
tttt |
43398844 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 804 - 912
Target Start/End: Original strand, 31469072 - 31469181
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| |||||||||||||||| | ||||||| ||||||||||||||| ||||||| || |||||| | |||| ||||| | ||||||||||||| |
|
|
T |
31469072 |
gtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttata |
31469171 |
T |
 |
Q |
903 |
ttttgggacg |
912 |
Q |
|
|
|||||||||| |
|
|
T |
31469172 |
ttttgggacg |
31469181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 815 - 907
Target Start/End: Complemental strand, 35311283 - 35311190
Alignment:
Q |
815 |
taagcaaaaattta-taaacaaaatttaatgtatttggttcaaaatttataccaaatagaacacttatgttgatccatttttgcttatattttg |
907 |
Q |
|
|
|||| ||||||||| | ||||||| ||||||||||||||||||||||| ||| | ||| | ||||||||||| ||||||||||||| |||||| |
|
|
T |
35311283 |
taagaaaaaatttagtcaacaaaagttaatgtatttggttcaaaatttgtacaagatatataacttatgttgacccatttttgcttacattttg |
35311190 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 811 - 911
Target Start/End: Complemental strand, 38935465 - 38935364
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
||||||| |||||||| | ||||||| ||||||||||| ||||||||| | || |||||| | || |||||||||| ||||||||||||||||||||| |
|
|
T |
38935465 |
aatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttggg |
38935366 |
T |
 |
Q |
910 |
ac |
911 |
Q |
|
|
|| |
|
|
T |
38935365 |
ac |
38935364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 2884264 - 2884324
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||||||| |||||||| | ||||||| |||||||||||||||||||||||||| |||||| |
|
|
T |
2884264 |
aatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaata |
2884324 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 805 - 912
Target Start/End: Original strand, 10459268 - 10459376
Alignment:
Q |
805 |
tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatat |
903 |
Q |
|
|
||||| |||||||||||||||| | ||||||| ||||||||||||||||||||||| || || || | | ||||||||||| | || |||||||| || |
|
|
T |
10459268 |
tcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacat |
10459367 |
T |
 |
Q |
904 |
tttgggacg |
912 |
Q |
|
|
||||||||| |
|
|
T |
10459368 |
tttgggacg |
10459376 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 804 - 871
Target Start/End: Complemental strand, 17437235 - 17437168
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||||| ||||||| ||||||||| | ||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
T |
17437235 |
gtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaata |
17437168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 805 - 921
Target Start/End: Complemental strand, 16180543 - 16180426
Alignment:
Q |
805 |
tcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatat |
903 |
Q |
|
|
||||| |||||||| |||| || | ||||||| |||||||||||||||||||||||||| |||| | | | ||||||||| ||||||||||| || |
|
|
T |
16180543 |
tcccaaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacat |
16180444 |
T |
 |
Q |
904 |
tttgggacgcagaaagta |
921 |
Q |
|
|
||||||||| |||||||| |
|
|
T |
16180443 |
tttgggacggagaaagta |
16180426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 812 - 907
Target Start/End: Original strand, 11386318 - 11386414
Alignment:
Q |
812 |
atataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttg |
907 |
Q |
|
|
|||||| |||||||| || ||||||| ||||| ||||| |||||||||| || |||||| | || |||||||||||| | |||||||||||||||| |
|
|
T |
11386318 |
atataaacaaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg |
11386414 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 794 - 912
Target Start/End: Original strand, 944762 - 944881
Alignment:
Q |
794 |
tactctttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatt |
892 |
Q |
|
|
||||||||| || || ||||||||||||||| || || |||| ||||||||||| ||||||||||| ||||||||| | | ||||||||||| ||| |
|
|
T |
944762 |
tactctttccgtttcaaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatt |
944861 |
T |
 |
Q |
893 |
tttgcttatattttgggacg |
912 |
Q |
|
|
||| |||| |||||| |||| |
|
|
T |
944862 |
tttacttacattttgagacg |
944881 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 811 - 864
Target Start/End: Original strand, 7932751 - 7932804
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttata |
864 |
Q |
|
|
|||||||||||||||| | ||||||| |||| ||||||||||||||||||||| |
|
|
T |
7932751 |
aatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttata |
7932804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 804 - 912
Target Start/End: Complemental strand, 31469180 - 31469071
Alignment:
Q |
804 |
gtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttata |
902 |
Q |
|
|
|||||| |||||||||||||||| | ||| ||| |||||||||||| | |||| ||| |||||||| | | ||| |||||| | ||||||||||||| |
|
|
T |
31469180 |
gtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata |
31469081 |
T |
 |
Q |
903 |
ttttgggacg |
912 |
Q |
|
|
|||||||||| |
|
|
T |
31469080 |
ttttgggacg |
31469071 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 910
Target Start/End: Original strand, 43042194 - 43042274
Alignment:
Q |
831 |
aacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggga |
910 |
Q |
|
|
|||||||||||||||||| ||||||||||||||| || ||| | | |||| |||| | |||||||||||| ||||||||| |
|
|
T |
43042194 |
aacaaaatttaatgtattcggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttggga |
43042274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 44726884 - 44726824
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||||||| ||||||| || ||||||| ||||||||||| ||| |||||||||| |||||| |
|
|
T |
44726884 |
aatataagaaaaaattgatcaacaaaaattaatgtatttagtttaaaatttatatcaaata |
44726824 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 842 - 912
Target Start/End: Complemental strand, 24037655 - 24037584
Alignment:
Q |
842 |
atgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
|||||||| ||||||||||| ||||||||| | | ||||||||||| |||||||||||| ||||| ||||| |
|
|
T |
24037655 |
atgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacg |
24037584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 861
Target Start/End: Complemental strand, 15660753 - 15660703
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaattt |
861 |
Q |
|
|
|||||||||||||||| || |||| || |||||||||||| |||||||||| |
|
|
T |
15660753 |
aatataagcaaaaattgatcaacacaaattaatgtatttgattcaaaattt |
15660703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 847 - 912
Target Start/End: Original strand, 16564420 - 16564486
Alignment:
Q |
847 |
tttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
||||||||||||||| ||||||||| | | ||||||||||| ||||||| |||| ||||||||||| |
|
|
T |
16564420 |
tttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacg |
16564486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 908
Target Start/End: Complemental strand, 41374631 - 41374533
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttgg |
908 |
Q |
|
|
|||||||| ||||||| | ||| ||| |||||||||||| |||||| ||||||||||||| | | |||| |||| | |||||||||||| ||||||| |
|
|
T |
41374631 |
aatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgcttacattttgg |
41374533 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 831 - 912
Target Start/End: Original strand, 11114264 - 11114346
Alignment:
Q |
831 |
aacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgggacg |
912 |
Q |
|
|
||||||| |||||||||| ||| ||||||||||||||||| | || |||||||||||| |||||| |||||||||||||||| |
|
|
T |
11114264 |
aacaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggacg |
11114346 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 871
Target Start/End: Complemental strand, 29111061 - 29111001
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
||||||| |||||||| || ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
T |
29111061 |
aatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaata |
29111001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 811 - 922
Target Start/End: Original strand, 8777777 - 8777889
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
||||||| |||||||| || ||||||| ||||| |||||||||||||||||||| ||||| | ||||||||| |||||||||| |||| |||| || |
|
|
T |
8777777 |
aatataaacaaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaacttatgttaatccatttttacttaattttttgg |
8777876 |
T |
 |
Q |
910 |
acgcagaaagtat |
922 |
Q |
|
|
||| ||| ||||| |
|
|
T |
8777877 |
acgaagagagtat |
8777889 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 801 - 906
Target Start/End: Complemental strand, 33557887 - 33557781
Alignment:
Q |
801 |
tctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaataga-acacttatgttgatccatttttgctt |
899 |
Q |
|
|
||||||| | || ||||| ||||||| || || |||| ||||||||||| ||||||||||| || |||||| | | ||||||||||||| ||||||||| |
|
|
T |
33557887 |
tctgtcctaaaacataagtaaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgctt |
33557788 |
T |
 |
Q |
900 |
atatttt |
906 |
Q |
|
|
| ||||| |
|
|
T |
33557787 |
acatttt |
33557781 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 811 - 908
Target Start/End: Complemental strand, 35901137 - 35901039
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaaca-cttatgttgatccatttttgcttatattttgg |
908 |
Q |
|
|
||||||||||||||| | ||||||| |||||||||| || ||||||||| ||| || || | || |||||||||| |||||||||||||||||||| |
|
|
T |
35901137 |
aatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg |
35901039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 861
Target Start/End: Original strand, 13209977 - 13210022
Alignment:
Q |
816 |
aagcaaaaatttataaacaaaatttaatgtatttggttcaaaattt |
861 |
Q |
|
|
||||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
T |
13209977 |
aagcaaaaattgatcaacaaaagttaatgtatttggttcaaaattt |
13210022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 31236867 - 31236926
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
||||||||||||||| | |||| ||| ||||||||||||||| ||||||||| |||||||| |
|
|
T |
31236867 |
aatataagcaaaaatatctaaa-aaagtttaatgtatttggtccaaaatttacaccaaata |
31236926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 811 - 924
Target Start/End: Complemental strand, 9548151 - 9548038
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaatagaac-acttatgttgatccatttttgcttatattttggg |
909 |
Q |
|
|
||||||| |||||||| | ||||||| ||| | ||||||||||||||||| ||| ||||| | | ||||||||||| ||||||| ||| |||||||| |
|
|
T |
9548151 |
aatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt-cttgcattttggg |
9548053 |
T |
 |
Q |
910 |
acgcagaaagtattt |
924 |
Q |
|
|
||| ||| ||||||| |
|
|
T |
9548052 |
acgaagagagtattt |
9548038 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 865
Target Start/End: Original strand, 28725583 - 28725648
Alignment:
Q |
800 |
ttctgtcccacaatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttatac |
865 |
Q |
|
|
|||||||||| ||| |||||||||||| | || |||||||| |||||||| |||| ||||||||| |
|
|
T |
28725583 |
ttctgtcccaaaatgtaagcaaaaattggtcaataaaatttattgtatttgattcagaatttatac |
28725648 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 871
Target Start/End: Original strand, 37939 - 37979
Alignment:
Q |
831 |
aacaaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
||||||| ||||||||||||||| ||||||||||||||||| |
|
|
T |
37939 |
aacaaaagttaatgtatttggtttaaaatttataccaaata |
37979 |
T |
 |
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Target: scaffold0126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 870
Target Start/End: Original strand, 28175 - 28234
Alignment:
Q |
811 |
aatataagcaaaaatttataaacaaaatttaatgtatttggttcaaaatttataccaaat |
870 |
Q |
|
|
||||||| ||||||| || ||||||| |||||||||||||||||||||| |||||||| |
|
|
T |
28175 |
aatataaataaaaattgattaacaaaagttaatgtatttggttcaaaattcgtaccaaat |
28234 |
T |
 |
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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 871
Target Start/End: Complemental strand, 51300 - 51263
Alignment:
Q |
834 |
aaaatttaatgtatttggttcaaaatttataccaaata |
871 |
Q |
|
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
T |
51300 |
aaaaattaatgtatttagttcaaaatttataccaaata |
51263 |
T |
 |
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