View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380-Insertion-3 (Length: 756)

Name: NF4380-Insertion-3
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380-Insertion-3
NF4380-Insertion-3
[»] chr1 (2 HSPs)
chr1 (8-742)||(51108769-51109493)
chr1 (320-405)||(51116634-51116719)


Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Original strand, 51108769 - 51109493
Alignment:
8 accaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactgaaggcacaaacacaaaatgcgcgacatgaataaaaccaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51108769 accaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactgaaggcacaaacacaaaatgcgcgacatgaataaaaccaaga 51108868  T
108 gacgcagattgtcacaataccaaaatcaccatggaacatattcccaatagcaaagatgacaattttgatagtgttgaaaagagattgtttctaaggaaca 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
51108869 gacgcagattgtcacaataccaaaatcaccatgcaacatattcccaatagcaaagatgacaattttgatagtgttg----------gtttctaaggaaca 51108958  T
208 ttcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttgtaaattacctgaacgggtgcagcataacacctcacgctgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51108959 ttcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttgtaaattacctgaacgggtgcagcataacacctcacgctgt 51109058  T
308 ttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
51109059 ttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggttcgggaatagaatt 51109158  T
408 tgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttccgattcgatgcagaaatgacata 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
51109159 tgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttcagattcgatgcagaaatgacata 51109258  T
508 acctcaacggttgaattaaccgtaactgaggtttggtgtttgtttattagttagttgtgcaacttctaaaaatacacattagtgagtgtgaatgtttcca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51109259 acctcaacggttgaattaaccgtaactgaggtttggtgtttgtttattagttagttgtgcaacttctaaaaatacacattagtgagtgtgaatgtttcca 51109358  T
608 ctttccagccttcttttttggcttgcgtctgtgactgtgtccaaccttctttttcacttgtgatcaatattgaaattacaagtactttcttttctttgtt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51109359 ctttccagccttcttttttggcttgcgtctgtgactgtgtccaaccttctttttcacttgtgatcaatattgaaattacaagtactttcttttctttgtt 51109458  T
708 taccagcaaaataattctttacaacacctatagtg 742  Q
    ||| |||||||||||||||||||||||||||||||    
51109459 tacgagcaaaataattctttacaacacctatagtg 51109493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 51116634 - 51116719
Alignment:
320 gagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaa 405  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||    
51116634 gagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa 51116719  T

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