View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4380-Insertion-3 (Length: 756)
Name: NF4380-Insertion-3
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4380-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Original strand, 51108769 - 51109493
Alignment:
| Q |
8 |
accaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactgaaggcacaaacacaaaatgcgcgacatgaataaaaccaaga |
107 |
Q |
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| T |
51108769 |
accaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactgaaggcacaaacacaaaatgcgcgacatgaataaaaccaaga |
51108868 |
T |
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| Q |
108 |
gacgcagattgtcacaataccaaaatcaccatggaacatattcccaatagcaaagatgacaattttgatagtgttgaaaagagattgtttctaaggaaca |
207 |
Q |
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| T |
51108869 |
gacgcagattgtcacaataccaaaatcaccatgcaacatattcccaatagcaaagatgacaattttgatagtgttg----------gtttctaaggaaca |
51108958 |
T |
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| Q |
208 |
ttcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttgtaaattacctgaacgggtgcagcataacacctcacgctgt |
307 |
Q |
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| T |
51108959 |
ttcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttgtaaattacctgaacgggtgcagcataacacctcacgctgt |
51109058 |
T |
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| Q |
308 |
ttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaatt |
407 |
Q |
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| T |
51109059 |
ttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggttcgggaatagaatt |
51109158 |
T |
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| Q |
408 |
tgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttccgattcgatgcagaaatgacata |
507 |
Q |
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| T |
51109159 |
tgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttcagattcgatgcagaaatgacata |
51109258 |
T |
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| Q |
508 |
acctcaacggttgaattaaccgtaactgaggtttggtgtttgtttattagttagttgtgcaacttctaaaaatacacattagtgagtgtgaatgtttcca |
607 |
Q |
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| T |
51109259 |
acctcaacggttgaattaaccgtaactgaggtttggtgtttgtttattagttagttgtgcaacttctaaaaatacacattagtgagtgtgaatgtttcca |
51109358 |
T |
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| Q |
608 |
ctttccagccttcttttttggcttgcgtctgtgactgtgtccaaccttctttttcacttgtgatcaatattgaaattacaagtactttcttttctttgtt |
707 |
Q |
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| T |
51109359 |
ctttccagccttcttttttggcttgcgtctgtgactgtgtccaaccttctttttcacttgtgatcaatattgaaattacaagtactttcttttctttgtt |
51109458 |
T |
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| Q |
708 |
taccagcaaaataattctttacaacacctatagtg |
742 |
Q |
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| T |
51109459 |
tacgagcaaaataattctttacaacacctatagtg |
51109493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 320 - 405
Target Start/End: Original strand, 51116634 - 51116719
Alignment:
| Q |
320 |
gagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaa |
405 |
Q |
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| T |
51116634 |
gagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa |
51116719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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