View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380-Insertion-4 (Length: 605)

Name: NF4380-Insertion-4
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380-Insertion-4
NF4380-Insertion-4
[»] chr5 (1 HSPs)
chr5 (12-605)||(38028728-38029319)
[»] chr3 (4 HSPs)
chr3 (201-534)||(35614359-35614692)
chr3 (188-344)||(35610061-35610217)
chr3 (18-107)||(35614872-35614961)
chr3 (11-107)||(35610389-35610485)


Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 12 - 605
Target Start/End: Original strand, 38028728 - 38029319
Alignment:
12 cataccgctaatccaatacatccaagtccaaaaatagcaactgtcgaccctggttcaacatttgctgttttccatgcagcacctacccctaaaaattgat 111  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
38028728 cataccgctaatccaatacatccgagtccaaaaatagctactgtcgaccctagttcaacatttgctgttttccatgcagcacctacccctaaaaattgat 38028827  T
112 atttgatcaaaatgttgaattagaacaactttgtttagttgtgaactnnnnnnnnnntaacaaccttgaatttgcatacctgttgatacaccacaactga 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
38028828 atttgatcaaaatattgaattagaacaactttgtttagttgtgaactaaaaaaaa--taacaaccttgaatttgcatacctgttgatacaccacaactga 38028925  T
212 ggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgctaaaactcgagacaaatatgaaatg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38028926 ggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgctaaaactcgagacaaatatgaaatg 38029025  T
312 gtttataatctctccatttagatcagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaaaggttgctcttt 411  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38029026 gtttataatctctccatttagattagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaaaggttgctcttt 38029125  T
412 gttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctccaacactttcca 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38029126 gttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctccaacactttcca 38029225  T
512 caaccctgaatcacataaaaattaattaaaacttggacatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacata 605  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38029226 caaccctgaatcacataaaaattaattaaaacttgaacatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacata 38029319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 201 - 534
Target Start/End: Complemental strand, 35614692 - 35614359
Alignment:
201 accacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcag-tgtcaaccacagtgtactcgctaaaactcgagac 299  Q
    ||||||||| |  ||||| |||| ||||||||||||| |||| ||||||||   || |||||||  ||||| |||||||||||||||| ||||| || ||    
35614692 accacaacttaaaaggcacgccccgttgggaggaatttctgggtcaatctttgttacattggcaaatgtca-ccacagtgtactcgctgaaacttgaaac 35614594  T
300 aaatatgaaatggtttataatctctccatttagatcagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaa 399  Q
    | | |||||||| | ||| |||||||| ||||| || |||||||||||| | |||| |||| ||||||||||   ||| |  || || || || | ||||    
35614593 atacatgaaatgatgtatgatctctccgtttaggtctgtgaatctggtgttctcatgtctaggcatccaaggagaaactttgaacgggaaattagtacaa 35614494  T
400 aggttgctctttgttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctc 499  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||| |  |  || ||||| ||||| |  ||||||||||||||||| |||||   ||  |    
35614493 aggttgctcttggttgatttgcaatctatacactctccacaatctggtagaaaaattggaataaccacatctccttttgtaacttcagttacattcttcc 35614394  T
500 caacactttccacaaccctgaatcacataaaaatt 534  Q
    |||||||||||||||||||   |||||||||||||    
35614393 caacactttccacaaccctatgtcacataaaaatt 35614359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 344
Target Start/End: Complemental strand, 35610217 - 35610061
Alignment:
188 tacctgttgatacaccacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgct 287  Q
    ||||||| ||||||||||||| ||| ||||| ||||| |  ||||| |||  |||||||||||| |||| ||||||| |||||||||| || ||||| ||    
35610217 tacctgtcgatacaccacaaccgagaaggcaggccctatgaggagggatttgtggatcaatctttagtacattggcaatgtcaaccacggtatactcact 35610118  T
288 aaaactcgagacaaatatgaaatggtttataatctctccatttagatcagtgaatct 344  Q
     ||||| || | ||| |||||||| | ||| |||||||| ||||| |||||||||||    
35610117 gaaacttgaaataaacatgaaatgatatatgatctctccgtttaggtcagtgaatct 35610061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 35614961 - 35614872
Alignment:
18 gctaatccaatacatccaagtccaaaaatagcaactgtcgaccctggttcaacatttgctgttttccatgcagcacctacccctaaaaat 107  Q
    |||||||||||| |||| |||||||||||||| ||||| |||||||| || |||  ||||||| |||| |||||||||||||||| ||||    
35614961 gctaatccaatagatcctagtccaaaaatagctactgtagaccctggctccacacctgctgttctccaagcagcacctacccctacaaat 35614872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 35610485 - 35610389
Alignment:
11 ccataccgctaatccaatacatccaagtccaaaaatagcaactgtcgaccctggttcaacatttgctgttttccatgcagcacctacccctaaaaat 107  Q
    |||||| |||||||||| | |||| || ||||| ||||||||||  |||||||| || |||  ||||||| |||| |||||||||||||||| ||||    
35610485 ccatactgctaatccaacagatcctagcccaaatatagcaactgatgaccctggctctacacctgctgttctccaagcagcacctacccctacaaat 35610389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University