View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4380-Insertion-4 (Length: 605)
Name: NF4380-Insertion-4
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4380-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 12 - 605
Target Start/End: Original strand, 38028728 - 38029319
Alignment:
| Q |
12 |
cataccgctaatccaatacatccaagtccaaaaatagcaactgtcgaccctggttcaacatttgctgttttccatgcagcacctacccctaaaaattgat |
111 |
Q |
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| T |
38028728 |
cataccgctaatccaatacatccgagtccaaaaatagctactgtcgaccctagttcaacatttgctgttttccatgcagcacctacccctaaaaattgat |
38028827 |
T |
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| Q |
112 |
atttgatcaaaatgttgaattagaacaactttgtttagttgtgaactnnnnnnnnnntaacaaccttgaatttgcatacctgttgatacaccacaactga |
211 |
Q |
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| T |
38028828 |
atttgatcaaaatattgaattagaacaactttgtttagttgtgaactaaaaaaaa--taacaaccttgaatttgcatacctgttgatacaccacaactga |
38028925 |
T |
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| Q |
212 |
ggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgctaaaactcgagacaaatatgaaatg |
311 |
Q |
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| T |
38028926 |
ggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgctaaaactcgagacaaatatgaaatg |
38029025 |
T |
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| Q |
312 |
gtttataatctctccatttagatcagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaaaggttgctcttt |
411 |
Q |
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| T |
38029026 |
gtttataatctctccatttagattagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaaaggttgctcttt |
38029125 |
T |
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| Q |
412 |
gttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctccaacactttcca |
511 |
Q |
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| T |
38029126 |
gttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctccaacactttcca |
38029225 |
T |
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| Q |
512 |
caaccctgaatcacataaaaattaattaaaacttggacatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacata |
605 |
Q |
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| T |
38029226 |
caaccctgaatcacataaaaattaattaaaacttgaacatcatcaacttctatagtattaaaataataatgtatgaaaaaatgagaccaacata |
38029319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 201 - 534
Target Start/End: Complemental strand, 35614692 - 35614359
Alignment:
| Q |
201 |
accacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcag-tgtcaaccacagtgtactcgctaaaactcgagac |
299 |
Q |
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| T |
35614692 |
accacaacttaaaaggcacgccccgttgggaggaatttctgggtcaatctttgttacattggcaaatgtca-ccacagtgtactcgctgaaacttgaaac |
35614594 |
T |
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| Q |
300 |
aaatatgaaatggtttataatctctccatttagatcagtgaatctggtggtatcatatctaagcatccaaggtttaacatcaaaaggaaactttgaacaa |
399 |
Q |
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| T |
35614593 |
atacatgaaatgatgtatgatctctccgtttaggtctgtgaatctggtgttctcatgtctaggcatccaaggagaaactttgaacgggaaattagtacaa |
35614494 |
T |
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| Q |
400 |
aggttgctctttgttgatttgcaatctatgcactcttcacaatcagccatgaagattgggataacaatgtctccttttgtaacttctgttactccctctc |
499 |
Q |
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| T |
35614493 |
aggttgctcttggttgatttgcaatctatacactctccacaatctggtagaaaaattggaataaccacatctccttttgtaacttcagttacattcttcc |
35614394 |
T |
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| Q |
500 |
caacactttccacaaccctgaatcacataaaaatt |
534 |
Q |
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| T |
35614393 |
caacactttccacaaccctatgtcacataaaaatt |
35614359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 344
Target Start/End: Complemental strand, 35610217 - 35610061
Alignment:
| Q |
188 |
tacctgttgatacaccacaactgaggaggcatgccctgttgggaggaattgctggatcaatcttgagtagattggcagtgtcaaccacagtgtactcgct |
287 |
Q |
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| T |
35610217 |
tacctgtcgatacaccacaaccgagaaggcaggccctatgaggagggatttgtggatcaatctttagtacattggcaatgtcaaccacggtatactcact |
35610118 |
T |
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| Q |
288 |
aaaactcgagacaaatatgaaatggtttataatctctccatttagatcagtgaatct |
344 |
Q |
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| T |
35610117 |
gaaacttgaaataaacatgaaatgatatatgatctctccgtttaggtcagtgaatct |
35610061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 35614961 - 35614872
Alignment:
| Q |
18 |
gctaatccaatacatccaagtccaaaaatagcaactgtcgaccctggttcaacatttgctgttttccatgcagcacctacccctaaaaat |
107 |
Q |
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| T |
35614961 |
gctaatccaatagatcctagtccaaaaatagctactgtagaccctggctccacacctgctgttctccaagcagcacctacccctacaaat |
35614872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 35610485 - 35610389
Alignment:
| Q |
11 |
ccataccgctaatccaatacatccaagtccaaaaatagcaactgtcgaccctggttcaacatttgctgttttccatgcagcacctacccctaaaaat |
107 |
Q |
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| T |
35610485 |
ccatactgctaatccaacagatcctagcccaaatatagcaactgatgaccctggctctacacctgctgttctccaagcagcacctacccctacaaat |
35610389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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