View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380_high_1 (Length: 519)

Name: NF4380_high_1
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380_high_1
NF4380_high_1
[»] chr4 (5 HSPs)
chr4 (11-519)||(1172518-1173007)
chr4 (248-291)||(1182388-1182431)
chr4 (86-180)||(1181817-1181907)
chr4 (410-449)||(1165110-1165149)
chr4 (316-376)||(1182462-1182525)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Original strand, 1172518 - 1173007
Alignment:
11 cacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggtttaggaaagaggagtagca--aagggtgagacgaaaattgagaatct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||   |  |||||||||| || |||||||| |||    
1172518 cacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggttttggaaag-ggagttatataaagggtgagatgagaattgagagtct 1172616  T
109 aaagtgtaaccctaaaaactggtccaattaatgacaacctattacaagagtggattagcaaatcaacttgatattaaaattaatattaagaattgaacat 208  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||     
1172617 aaagtgtacccctaaaaactggtccaattaatgacaacctattacacaa-tggattagcaaatcaacttgatattaaaattaatattaagaatcgaaca- 1172714  T
209 gttgaaacatcaatcataaataaggcattctgacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctga 308  Q
            | ||| ||   ||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1172715 --------aacaaaca---ataa---attc-gacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctga 1172799  T
309 aattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagcaaattaaacgacgattataactc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||    
1172800 aattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagc-----aaacgacgattataactc 1172894  T
409 tcaatatcgactgactctttttgtttccctcaagaagatgtatgtattccttc--aagtagggttgaggtatttatatgaagtgttaccaaagaaataaa 506  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
1172895 tcaatatcgactgactctttttgtttccctcaagaacatttatgtattcgttcttaagtagggttgaggtatttatatgaagtgttaccaaagaaataaa 1172994  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 1182388 - 1182431
Alignment:
248 taggcacatgcatgaacaaacaaacaataaattcgatagcgata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
1182388 taggcacatgcatgaacaaacaaacaataaattcgatagcgata 1182431  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 1181817 - 1181907
Alignment:
86 ggtgagacgaaaattgagaatctaaagtgtaaccctaaaaactggtccaattaatgacaacctattacaagagtggattagcaaatcaacttgat 180  Q
    ||||||| || || ||||||||||| ||| | |||||||||| ||||||||    ||| ||||||||| | | ||||||||||||||||||||||    
1181817 ggtgagaagagaactgagaatctaatgtggagccctaaaaacgggtccaat----gacgacctattactacaatggattagcaaatcaacttgat 1181907  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 1165110 - 1165149
Alignment:
410 caatatcgactgactctttttgtttccctcaagaagatgt 449  Q
    |||| ||||||||||||||| |||||||||||||||||||    
1165110 caatgtcgactgactcttttggtttccctcaagaagatgt 1165149  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 1182462 - 1182525
Alignment:
316 attaagagtttaatatgcata--cctgaaag-tgagaaacttgaaacaaagtgaagaattgtga 376  Q
    ||||||| || |||||| |||  |||||||| ||||||||||||||||||||||||| ||||||    
1182462 attaagaattaaatatgtatatacctgaaaggtgagaaacttgaaacaaagtgaagacttgtga 1182525  T

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