View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4380_high_1 (Length: 519)
Name: NF4380_high_1
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4380_high_1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Original strand, 1172518 - 1173007
Alignment:
| Q |
11 |
cacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggtttaggaaagaggagtagca--aagggtgagacgaaaattgagaatct |
108 |
Q |
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| T |
1172518 |
cacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggttttggaaag-ggagttatataaagggtgagatgagaattgagagtct |
1172616 |
T |
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| Q |
109 |
aaagtgtaaccctaaaaactggtccaattaatgacaacctattacaagagtggattagcaaatcaacttgatattaaaattaatattaagaattgaacat |
208 |
Q |
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| T |
1172617 |
aaagtgtacccctaaaaactggtccaattaatgacaacctattacacaa-tggattagcaaatcaacttgatattaaaattaatattaagaatcgaaca- |
1172714 |
T |
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| Q |
209 |
gttgaaacatcaatcataaataaggcattctgacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctga |
308 |
Q |
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| T |
1172715 |
--------aacaaaca---ataa---attc-gacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctga |
1172799 |
T |
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| Q |
309 |
aattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagcaaattaaacgacgattataactc |
408 |
Q |
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| T |
1172800 |
aattaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagc-----aaacgacgattataactc |
1172894 |
T |
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| Q |
409 |
tcaatatcgactgactctttttgtttccctcaagaagatgtatgtattccttc--aagtagggttgaggtatttatatgaagtgttaccaaagaaataaa |
506 |
Q |
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| T |
1172895 |
tcaatatcgactgactctttttgtttccctcaagaacatttatgtattcgttcttaagtagggttgaggtatttatatgaagtgttaccaaagaaataaa |
1172994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 1182388 - 1182431
Alignment:
| Q |
248 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
291 |
Q |
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| T |
1182388 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
1182431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 1181817 - 1181907
Alignment:
| Q |
86 |
ggtgagacgaaaattgagaatctaaagtgtaaccctaaaaactggtccaattaatgacaacctattacaagagtggattagcaaatcaacttgat |
180 |
Q |
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| T |
1181817 |
ggtgagaagagaactgagaatctaatgtggagccctaaaaacgggtccaat----gacgacctattactacaatggattagcaaatcaacttgat |
1181907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 1165110 - 1165149
Alignment:
| Q |
410 |
caatatcgactgactctttttgtttccctcaagaagatgt |
449 |
Q |
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| T |
1165110 |
caatgtcgactgactcttttggtttccctcaagaagatgt |
1165149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 1182462 - 1182525
Alignment:
| Q |
316 |
attaagagtttaatatgcata--cctgaaag-tgagaaacttgaaacaaagtgaagaattgtga |
376 |
Q |
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| T |
1182462 |
attaagaattaaatatgtatatacctgaaaggtgagaaacttgaaacaaagtgaagacttgtga |
1182525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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