View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380_high_2 (Length: 407)

Name: NF4380_high_2
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380_high_2
NF4380_high_2
[»] chr3 (1 HSPs)
chr3 (177-406)||(34899746-34899975)
[»] chr2 (1 HSPs)
chr2 (30-125)||(8734180-8734275)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 177 - 406
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
177 gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34899746 gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata 34899845  T
277 aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34899846 aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa 34899945  T
377 gtttggtagtttcaactttcaagttgagat 406  Q
    ||||||||||||||||||||||||||||||    
34899946 gtttggtagtttcaactttcaagttgagat 34899975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 8734180 - 8734275
Alignment:
30 agtataccaatccaaagccacctcgaccgattatattagccgtgctaaatccgtcagtagctttggctaactcctcatatgagaactccactgact 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8734180 agtataccaatccaaagccacctcgaccgattatattagccgtgctaaatccgtcagtagctttggctaactcctcatatgagaactccactgact 8734275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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