View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4380_high_2 (Length: 407)
Name: NF4380_high_2
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4380_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 177 - 406
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
177 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
276 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
277 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
376 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
377 |
gtttggtagtttcaactttcaagttgagat |
406 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 8734180 - 8734275
Alignment:
| Q |
30 |
agtataccaatccaaagccacctcgaccgattatattagccgtgctaaatccgtcagtagctttggctaactcctcatatgagaactccactgact |
125 |
Q |
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| T |
8734180 |
agtataccaatccaaagccacctcgaccgattatattagccgtgctaaatccgtcagtagctttggctaactcctcatatgagaactccactgact |
8734275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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