View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4380_high_3 (Length: 379)

Name: NF4380_high_3
Description: NF4380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4380_high_3
NF4380_high_3
[»] chr4 (1 HSPs)
chr4 (11-369)||(5665189-5665546)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 5665546 - 5665189
Alignment:
11 attattcttagaacaactacatgaaaataaaaacaactacattagtgataagaaaagtgcataatcacataaaatttgggccaaacccggaagtgtcatg 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5665546 attatttttagaacaactacatgaaaataaaaacaactacattagtgataagaaaagtgcataatcacataaaatttgggccaaacccggaagtgtcatg 5665447  T
111 ctggtcgaccatgatattgtcgaactcctcctcctttccctggtcaaagtcctcctcctcaatctattgctccctttaggcagctatatccgtctgctcc 210  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
5665446 ctggtcgaccatgatattgtcaaactcctcctcctttccatggtcaaagtcctcctcctcaatctattgctccctttaggcagctatatctgtctgctcc 5665347  T
211 cgaaaaataaccccttatcctctcctttgtaccaaacctctcaaaagaccctctaggcttctgcctattctgaaagactgcaatgctgcttcagcgaact 310  Q
    || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
5665346 cg-aaaataaccccttaccctcttctttgtaccaaacctctcaaaagaccctctaggcttctgcctattctgcaagactgcaacgctgcttcagcaaact 5665248  T
311 gctgagagaaatgtggtggctcaatgtacaactgagatgatgcttcttgcatccaattt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5665247 gctgagagaaatgtggtggctcaatgtacaactgagatgatgcttcttgcatccaattt 5665189  T

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